Wall clock time and date at job start Tue Mar 31 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47018 * 2 1 4 4 C 1.46495 * 120.00215 * 269.99871 * 3 2 1 5 5 C 1.50694 * 109.47357 * 269.99983 * 4 3 2 6 6 H 1.08007 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00156 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46975 * 89.99759 * 9 7 5 11 11 H 1.48497 * 109.47477 * 210.00004 * 9 7 5 12 12 H 1.48502 * 109.47181 * 330.00633 * 9 7 5 13 13 C 1.34783 * 119.99872 * 89.99848 * 3 2 1 14 14 O 1.21278 * 119.99838 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99884 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47021 * 179.97438 * 15 13 3 17 17 C 1.47853 * 110.99653 * 49.15949 * 16 15 13 18 18 C 1.55382 * 104.83275 * 146.36900 * 17 16 15 19 19 C 1.55135 * 101.43926 * 322.95268 * 18 17 16 20 20 O 1.42903 * 110.70805 * 277.17584 * 19 18 17 21 21 C 1.53001 * 110.70430 * 154.12005 * 19 18 17 22 22 C 1.53003 * 109.47086 * 63.80606 * 21 19 18 23 23 C 1.47444 * 110.99947 * 169.99764 * 16 15 13 24 24 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47474 * 300.00052 * 1 2 3 26 26 H 1.09006 * 109.47159 * 59.99622 * 1 2 3 27 27 H 1.08998 * 109.46725 * 240.00497 * 2 1 3 28 28 H 1.08994 * 109.47036 * 119.99949 * 2 1 3 29 29 H 1.09004 * 109.46842 * 30.00297 * 4 3 2 30 30 H 1.09004 * 109.46953 * 150.00033 * 4 3 2 31 31 H 0.97010 * 119.99481 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.46867 * 59.99654 * 15 13 3 33 33 H 1.08999 * 109.46764 * 299.99824 * 15 13 3 34 34 H 1.09004 * 110.37185 * 265.18804 * 17 16 15 35 35 H 1.08996 * 110.37339 * 27.42345 * 17 16 15 36 36 H 1.09004 * 111.16710 * 204.89782 * 18 17 16 37 37 H 1.08994 * 111.01289 * 80.93960 * 18 17 16 38 38 H 0.96700 * 114.00311 * 296.20009 * 20 19 18 39 39 H 1.09006 * 109.47306 * 183.80420 * 21 19 18 40 40 H 1.08996 * 109.47422 * 303.80722 * 21 19 18 41 41 H 1.09000 * 109.47373 * 59.99789 * 22 21 19 42 42 H 1.09000 * 109.47102 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.47053 * 299.99794 * 22 21 19 44 44 H 1.09005 * 109.88328 * 117.33897 * 23 16 15 45 45 H 1.08996 * 110.01999 * 356.23218 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1490 2.3898 -2.8778 8 7 3.3490 3.1258 -3.6179 9 14 5.9135 2.0969 -3.4167 10 1 5.9776 0.8755 -4.2590 11 1 6.3921 3.2641 -4.2002 12 1 6.7736 1.9180 -2.2194 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1673 15 6 1.9911 1.3063 2.4724 16 7 2.3100 2.2060 3.5889 17 6 1.6699 3.5261 3.4050 18 6 1.3236 4.0040 4.8424 19 6 0.9080 2.6708 5.5182 20 8 -0.4554 2.3591 5.2248 21 6 1.1323 2.7379 7.0302 22 6 0.2231 3.8104 7.6335 23 6 1.8551 1.6384 4.8714 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5816 1.6877 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6750 3.5157 -4.4443 32 1 2.6209 0.4186 2.5303 33 1 0.9430 1.0126 2.5298 34 1 2.3630 4.2212 2.9311 35 1 0.7636 3.4284 2.8074 36 1 0.4948 4.7120 4.8329 37 1 2.1971 4.4344 5.3322 38 1 -1.0897 2.9983 5.5774 39 1 0.8983 1.7708 7.4755 40 1 2.1735 2.9886 7.2323 41 1 -0.8183 3.5598 7.4314 42 1 0.3825 3.8579 8.7107 43 1 0.4570 4.7775 7.1883 44 1 2.7110 1.4612 5.5228 45 1 1.3219 0.7038 4.6976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495231077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:04 Heat of formation + Delta-G solvation = -106.217777 kcal Electronic energy + Delta-G solvation = -23745.593024 eV Core-core repulsion = 20376.008387 eV Total energy + Delta-G solvation = -3369.584637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35357 -40.10663 -37.28154 -36.57128 -34.92782 -33.83469 -31.89379 -31.52499 -29.86230 -29.13595 -27.06889 -24.77277 -24.09003 -23.91839 -22.20777 -21.11248 -19.97284 -18.63414 -18.07897 -17.68480 -17.17686 -16.78360 -16.71340 -16.18107 -15.85840 -15.34326 -15.00278 -14.74112 -14.57875 -14.50559 -14.14960 -13.84525 -13.57738 -13.47206 -13.29026 -13.18688 -13.07412 -12.87804 -12.70725 -12.65839 -12.51618 -12.36366 -12.24748 -12.12818 -11.84614 -11.82750 -11.71658 -11.48704 -10.80295 -10.64699 -10.36649 -9.46426 -9.30090 -8.22842 -6.37760 1.35580 1.38995 1.49555 1.82393 2.22928 2.40927 3.01662 3.06439 3.16730 3.50023 3.72105 3.78753 3.84673 4.08642 4.18621 4.30088 4.31874 4.37944 4.41411 4.46049 4.58023 4.60573 4.63596 4.81223 4.90302 4.92387 4.94602 4.99067 5.02816 5.07938 5.14900 5.17892 5.19989 5.28849 5.34336 5.43596 5.57744 5.82481 5.89204 6.01403 6.06444 6.69893 6.79713 6.80395 7.28168 7.49916 8.84227 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.003860 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.276728 B = 7251.372897 C = 7722.409210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.579 6.579 15 C 0.047 3.953 16 N -0.528 5.528 17 C 0.062 3.938 18 C -0.148 4.148 19 C 0.115 3.885 20 O -0.569 6.569 21 C -0.134 4.134 22 C -0.157 4.157 23 C 0.050 3.950 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.020 0.980 30 H -0.006 1.006 31 H 0.267 0.733 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.387 0.613 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.107 0.893 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -5.660 21.622 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.144 3.856 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.459 6.459 15 C -0.084 4.084 16 N -0.253 5.253 17 C -0.066 4.066 18 C -0.186 4.186 19 C 0.074 3.926 20 O -0.378 6.378 21 C -0.172 4.172 22 C -0.214 4.214 23 C -0.077 4.077 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.038 0.962 30 H 0.012 0.988 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.238 0.762 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.125 0.875 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.142 -5.438 21.139 22.966 hybrid contribution -0.272 0.685 -0.874 1.143 sum -7.415 -4.754 20.265 22.096 Atomic orbital electron populations 1.22137 0.94775 1.03498 1.01327 1.21741 0.95138 0.81446 1.03951 1.48286 1.64059 1.15116 1.06183 1.18659 0.95280 0.91355 0.80300 1.21705 0.97852 1.31983 1.06510 0.92954 1.25877 1.02505 0.94424 0.96404 1.70062 1.37832 1.34248 1.14766 0.85392 0.78865 0.78229 0.78174 1.18695 1.20582 1.19830 1.21135 0.77474 0.86734 0.86383 1.90620 1.47354 1.20272 1.87645 1.22259 1.01832 0.96577 0.87699 1.63524 1.57407 1.02807 1.01564 1.22911 0.95939 0.91034 0.96682 1.23518 1.02613 0.97880 0.94572 1.22438 0.82108 0.93323 0.94776 1.86514 1.15986 1.54360 1.80933 1.22008 1.01677 1.00922 0.92578 1.21806 0.99661 0.98408 1.01513 1.23059 0.97372 0.97189 0.90090 0.88436 0.92864 0.94233 0.90688 0.88356 0.96162 0.98767 0.92414 0.86304 0.90377 0.91964 0.96215 0.89485 0.89250 0.76201 0.90541 0.90202 0.91934 0.91359 0.92451 0.87471 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.24 71.98 0.74 -3.51 16 2 C 0.10 3.19 5.93 86.38 0.51 3.71 16 3 N -0.60 -26.87 2.46 -826.16 -2.03 -28.90 16 4 C 0.27 14.87 5.16 85.63 0.44 15.32 16 5 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.49 21.84 7.20 87.66 0.63 22.47 16 14 O -0.58 -31.12 13.13 -3.02 -0.04 -31.16 16 15 C 0.05 1.50 3.87 85.56 0.33 1.83 16 16 N -0.53 -16.52 5.21 -889.08 -4.63 -21.15 16 17 C 0.06 2.07 4.95 86.94 0.43 2.50 16 18 C -0.15 -3.33 5.32 32.14 0.17 -3.16 16 19 C 0.11 2.19 0.94 -9.62 -0.01 2.18 16 20 O -0.57 -11.28 13.05 -148.98 -1.94 -13.23 16 21 C -0.13 -1.77 5.09 30.60 0.16 -1.61 16 22 C -0.16 -1.62 9.43 71.98 0.68 -0.94 16 23 C 0.05 1.12 6.23 86.64 0.54 1.66 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.38 7.22 -2.39 -0.02 1.37 16 26 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 28 H 0.10 2.47 6.44 -2.39 -0.02 2.46 16 29 H 0.02 1.16 8.07 -2.38 -0.02 1.14 16 30 H -0.01 -0.37 7.42 -2.38 -0.02 -0.39 16 31 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 32 H 0.12 3.24 7.40 -2.39 -0.02 3.22 16 33 H 0.08 2.22 7.00 -2.39 -0.02 2.20 16 34 H 0.06 2.57 6.71 -2.38 -0.02 2.55 16 35 H 0.02 0.73 7.53 -2.39 -0.02 0.71 16 36 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.09 1.89 8.05 -2.39 -0.02 1.87 16 38 H 0.39 5.00 7.44 -74.06 -0.55 4.45 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 0.55 6.84 -2.39 -0.02 0.53 16 42 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.63 7.37 -2.39 -0.02 0.61 16 44 H 0.11 2.04 7.82 -2.38 -0.02 2.02 16 45 H 0.07 1.52 7.43 -2.39 -0.02 1.50 16 Total: -1.00 -77.37 352.94 -0.60 -77.97 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.41 Total: 16.36 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.32 Total: 9.29 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -6.38 Total: -107.29 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.98 Total: -44.39 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -77.37 -0.60 -77.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495231077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.252 kcal (2) G-P(sol) polarization free energy of solvation -77.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds