Wall clock time and date at job start Tue Mar 31 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34631 * 117.00160 * 2 1 4 4 O 1.21510 * 120.00417 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00125 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.62738 * 359.97438 * 5 3 2 7 7 C 1.53188 * 108.77464 * 126.41284 * 6 5 3 8 8 C 1.53046 * 109.33828 * 54.62068 * 7 6 5 9 9 C 1.53036 * 109.53555 * 298.68119 * 8 7 6 10 10 H 1.09002 * 109.50339 * 301.34681 * 9 8 7 11 11 C 1.50703 * 109.49871 * 181.28519 * 9 8 7 12 12 O 1.21283 * 119.99488 * 0.06388 * 11 9 8 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 9 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 C 1.50697 * 109.47491 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00490 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99545 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 59.99901 * 20 18 16 22 22 H 1.48497 * 109.47169 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47241 * 299.99984 * 20 18 16 24 24 C 1.46921 * 120.62996 * 180.02562 * 5 3 2 25 25 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46822 * 300.00044 * 1 2 3 27 27 H 1.09003 * 109.46663 * 59.99369 * 1 2 3 28 28 H 1.09000 * 109.58852 * 246.19846 * 6 5 3 29 29 H 1.09000 * 109.58997 * 6.62865 * 6 5 3 30 30 H 1.09003 * 109.50000 * 174.58333 * 7 6 5 31 31 H 1.08997 * 109.50047 * 294.65276 * 7 6 5 32 32 H 1.09002 * 109.48483 * 178.64703 * 8 7 6 33 33 H 1.08993 * 109.43232 * 58.68550 * 8 7 6 34 34 H 0.97001 * 119.99727 * 359.97438 * 13 11 9 35 35 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 36 36 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 37 37 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 38 38 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 39 39 H 0.97004 * 119.99855 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.58588 * 113.80095 * 24 5 3 41 41 H 1.08994 * 109.58887 * 353.37317 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 0.0005 5 7 3.4093 1.2701 -0.0005 6 6 4.2229 0.0467 -0.0005 7 6 5.2124 0.1127 -1.1681 8 6 6.0235 1.4070 -1.0725 9 6 5.0817 2.6094 -1.1682 10 1 4.5353 2.5696 -2.1105 11 6 5.8844 3.8833 -1.1057 12 8 7.0913 3.8347 -0.9966 13 7 5.2612 5.0765 -1.1717 14 6 6.0421 6.3148 -1.1170 15 6 5.1005 7.5164 -1.2176 16 6 5.9037 8.7902 -1.1608 17 1 6.9783 8.7471 -1.0623 18 6 5.2667 10.0108 -1.2345 19 7 3.9581 10.0634 -1.3549 20 14 6.2623 11.5898 -1.1633 21 1 7.2255 11.6190 -2.2932 22 1 5.3485 12.7561 -1.2623 23 1 7.0045 11.6495 0.1215 24 6 4.0907 2.5717 0.0000 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 4.7707 -0.0279 0.9389 29 1 3.5759 -0.8225 -0.1186 30 1 5.8862 -0.7430 -1.1229 31 1 4.6649 0.0952 -2.1104 32 1 6.7450 1.4450 -1.8887 33 1 6.5518 1.4343 -0.1195 34 1 4.2960 5.1153 -1.2598 35 1 6.5879 6.3588 -0.1745 36 1 6.7482 6.3360 -1.9471 37 1 4.5547 7.4724 -2.1601 38 1 4.3943 7.4953 -0.3876 39 1 3.5100 10.9221 -1.4072 40 1 4.6277 2.7027 0.9395 41 1 3.3564 3.3686 -0.1176 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495248477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:05 Heat of formation + Delta-G solvation = -156.001993 kcal Electronic energy + Delta-G solvation = -22553.527385 eV Core-core repulsion = 19045.950848 eV Total energy + Delta-G solvation = -3507.576537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -41.89220 -40.91813 -38.84730 -37.33455 -36.62040 -34.85829 -34.10672 -32.71155 -31.20123 -28.72528 -27.04009 -26.19645 -25.10203 -23.12904 -22.52932 -21.59141 -20.72476 -19.30212 -18.57560 -18.17554 -17.85244 -17.52347 -16.74775 -16.73326 -16.44937 -15.74017 -15.66728 -15.16882 -15.13368 -14.71007 -14.51363 -14.43203 -14.24694 -13.86685 -13.65913 -13.22952 -12.96313 -12.91509 -12.56506 -12.55065 -12.23058 -12.08861 -12.00610 -11.80154 -11.75700 -11.66258 -11.54020 -11.47774 -10.82592 -10.61104 -10.05487 -9.89520 -8.24426 -6.35707 1.00610 1.41067 1.43707 1.51738 1.56514 1.68607 2.22245 2.44174 2.87883 3.10083 3.57073 3.64229 3.73593 4.00836 4.13477 4.18931 4.36368 4.38275 4.41514 4.48672 4.50742 4.52888 4.65682 4.71466 4.76436 4.84635 4.89640 5.01600 5.16868 5.23644 5.26168 5.33587 5.39215 5.47545 5.56581 5.77572 6.14751 6.18513 6.56349 6.77855 7.12573 7.20606 7.33806 8.87264 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.003313 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.827593 B = 8449.020593 C = 9595.019700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.644 3.356 4 O -0.608 6.608 5 N -0.589 5.589 6 C 0.106 3.894 7 C -0.124 4.124 8 C -0.098 4.098 9 C -0.110 4.110 10 H 0.111 0.889 11 C 0.515 3.485 12 O -0.578 6.578 13 N -0.719 5.719 14 C 0.140 3.860 15 C 0.021 3.979 16 C -0.548 4.548 17 H 0.061 0.939 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.967 3.033 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.267 1.267 24 C 0.140 3.860 25 H 0.140 0.860 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.407 0.593 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.266 0.734 40 H 0.084 0.916 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -26.011 2.004 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.279 6.279 3 C 0.399 3.601 4 O -0.499 6.499 5 N -0.328 5.328 6 C -0.015 4.015 7 C -0.162 4.162 8 C -0.136 4.136 9 C -0.132 4.132 10 H 0.129 0.871 11 C 0.301 3.699 12 O -0.458 6.458 13 N -0.369 5.369 14 C 0.017 3.983 15 C -0.016 4.016 16 C -0.586 4.586 17 H 0.079 0.921 18 C -0.193 4.193 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.192 1.192 24 C 0.017 3.983 25 H 0.158 0.842 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.359 -25.660 2.077 25.962 hybrid contribution -0.381 1.490 -0.100 1.541 sum -3.740 -24.170 1.977 24.538 Atomic orbital electron populations 1.23508 0.72891 1.05697 1.02413 1.86224 1.25568 1.29427 1.86709 1.18237 0.83480 0.82352 0.76007 1.91012 1.65133 1.36305 1.57473 1.46930 1.01684 1.08995 1.75240 1.22073 0.93916 0.85345 1.00155 1.21930 0.97986 0.97780 0.98531 1.21362 0.96688 0.91954 1.03628 1.21703 0.97263 0.92731 1.01486 0.87083 1.20931 0.88104 0.85444 0.75373 1.90662 1.15971 1.87923 1.51227 1.46287 1.11583 1.05890 1.73147 1.21233 0.94301 0.82788 0.99992 1.19137 0.94568 0.91747 0.96158 1.21450 0.94129 0.91869 1.51190 0.92097 1.25911 0.96032 1.02983 0.94387 1.70069 1.09436 1.26689 1.50517 0.85475 0.78361 0.77898 0.79183 1.19234 1.20662 1.19232 1.21459 0.94370 0.84455 0.97986 0.84221 0.92342 0.92336 0.89475 0.87369 0.87261 0.91111 0.91170 0.91168 0.75713 0.93206 0.93319 0.97580 0.97555 0.92554 0.89778 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.56 113.37 1.20 1.84 16 2 O -0.37 -6.81 9.20 -55.40 -0.51 -7.32 16 3 C 0.64 15.69 8.43 129.79 1.09 16.78 16 4 O -0.61 -19.53 15.54 19.81 0.31 -19.22 16 5 N -0.59 -11.87 2.97 -949.18 -2.82 -14.69 16 6 C 0.11 1.35 6.45 86.36 0.56 1.91 16 7 C -0.12 -1.47 6.08 30.67 0.19 -1.28 16 8 C -0.10 -1.83 4.46 30.62 0.14 -1.70 16 9 C -0.11 -2.51 2.68 -11.45 -0.03 -2.54 16 10 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 11 C 0.51 16.62 7.16 87.66 0.63 17.24 16 12 O -0.58 -22.64 15.98 -3.04 -0.05 -22.69 16 13 N -0.72 -25.27 5.46 -463.07 -2.53 -27.79 16 14 C 0.14 6.09 5.61 86.38 0.48 6.58 16 15 C 0.02 1.10 5.09 29.85 0.15 1.25 16 16 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.01 0.32 5.46 84.65 0.46 0.78 16 19 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 20 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C 0.14 3.18 5.58 86.38 0.48 3.66 16 25 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 1.11 6.93 -2.39 -0.02 1.09 16 30 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.44 8.07 -2.39 -0.02 1.42 16 33 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 34 H 0.41 13.03 8.02 -92.71 -0.74 12.29 16 35 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 2.32 6.61 -2.39 -0.02 2.31 16 Total: -1.00 -73.56 341.45 2.57 -70.99 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.28 Total: 16.12 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.58 Total: 13.72 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -5.06 Total: -97.75 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.25 Total: -49.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.56 2.57 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495248477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.015 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds