Wall clock time and date at job start Tue Mar 31 2020 02:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34641 * 117.00068 * 2 1 4 4 O 1.21511 * 119.99869 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99710 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99622 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47064 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62638 * 359.71455 * 9 7 6 11 11 C 1.53627 * 108.54183 * 126.37295 * 10 9 7 12 12 C 1.53040 * 109.24108 * 54.85576 * 11 10 9 13 13 C 1.53000 * 109.46054 * 178.49243 * 12 11 10 14 14 C 1.50696 * 109.46924 * 295.06796 * 13 12 11 15 15 H 1.07993 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.37887 * 119.99958 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99491 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00031 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46930 * 59.99938 * 18 16 14 20 20 H 1.48505 * 109.46958 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46968 * 299.99945 * 18 16 14 22 22 C 1.53042 * 109.53871 * 298.50936 * 12 11 10 23 23 C 1.46920 * 120.63268 * 180.02562 * 9 7 6 24 24 H 1.08997 * 109.46949 * 300.00059 * 1 2 3 25 25 H 1.09003 * 109.47137 * 60.00208 * 1 2 3 26 26 H 1.09002 * 109.46805 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00772 * 359.97438 * 5 3 2 28 28 H 1.09002 * 109.47068 * 299.99729 * 6 5 3 29 29 H 1.09001 * 109.47372 * 59.99816 * 6 5 3 30 30 H 1.09005 * 109.58858 * 246.20434 * 10 9 7 31 31 H 1.08995 * 109.58867 * 6.63230 * 10 9 7 32 32 H 1.08999 * 109.63425 * 294.86802 * 11 10 9 33 33 H 1.09002 * 109.43315 * 174.72619 * 11 10 9 34 34 H 1.08998 * 109.45156 * 58.52626 * 12 11 10 35 35 H 1.09006 * 109.46937 * 55.06837 * 13 12 11 36 36 H 1.09004 * 109.47278 * 175.06625 * 13 12 11 37 37 H 0.97009 * 119.99728 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.50220 * 301.42045 * 22 12 11 39 39 H 1.08999 * 109.52344 * 181.33009 * 22 12 11 40 40 H 1.09001 * 109.58920 * 353.36599 * 23 9 7 41 41 H 1.09001 * 109.58884 * 113.65283 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0743 2.5755 0.0000 7 6 5.5683 2.3780 -0.0001 8 8 6.0319 1.2573 -0.0001 9 7 6.3894 3.4468 0.0009 10 6 5.8427 4.8106 -0.0042 11 6 6.4580 5.5880 1.1693 12 6 7.9840 5.5225 1.0728 13 6 8.6022 6.3267 2.2183 14 6 8.2529 7.7835 2.0548 15 1 7.6507 8.1038 1.2175 16 6 8.7032 8.7077 2.9737 17 7 9.4369 8.3177 3.9930 18 14 8.2697 10.5134 2.7715 19 1 6.7936 10.6737 2.7951 20 1 8.8708 11.2942 3.8825 21 1 8.8006 11.0078 1.4758 22 6 8.4408 4.0650 1.1687 23 6 7.8479 3.2704 0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9375 0.4567 -0.0005 28 1 3.7811 3.1330 -0.8895 29 1 3.7818 3.1320 0.8905 30 1 6.0951 5.3020 -0.9439 31 1 4.7595 4.7705 0.1102 32 1 6.1338 5.1460 2.1115 33 1 6.1350 6.6280 1.1246 34 1 8.3057 5.9419 0.1197 35 1 8.2116 5.9639 3.1691 36 1 9.6857 6.2087 2.2017 37 1 9.7534 8.9678 4.6397 38 1 8.0978 3.6373 2.1108 39 1 9.5290 4.0206 1.1237 40 1 8.0883 2.2137 0.1176 41 1 8.2599 3.6366 -0.9401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496981918.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:07 Heat of formation + Delta-G solvation = -128.718265 kcal Electronic energy + Delta-G solvation = -22432.957880 eV Core-core repulsion = 18926.564454 eV Total energy + Delta-G solvation = -3506.393425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82632 -40.06848 -37.67259 -36.79261 -34.82337 -34.15464 -32.26736 -31.02347 -29.10405 -28.05367 -26.92286 -24.54099 -22.98712 -22.07919 -21.45708 -20.10827 -19.47654 -18.52215 -17.30671 -16.89866 -16.62304 -16.34687 -16.06226 -15.70158 -14.70000 -14.57975 -14.26054 -14.14647 -13.75868 -13.68168 -13.29036 -13.02297 -12.88610 -12.56082 -12.34715 -12.27234 -11.86704 -11.24453 -11.06972 -11.04344 -10.90972 -10.87349 -10.74174 -10.52518 -10.21895 -10.00139 -9.69842 -9.57609 -9.34288 -9.03399 -8.52523 -8.38533 -6.03345 -4.05791 1.81463 2.40288 2.57313 2.97068 3.29968 3.35467 3.36753 4.02577 4.23796 4.42227 4.86119 4.93553 4.97254 5.01633 5.09380 5.20694 5.28140 5.30878 5.38838 5.42194 5.58250 5.63868 5.82362 5.90430 5.96196 6.07787 6.25199 6.30112 6.43900 6.54953 6.87635 6.92038 7.04307 7.12383 7.32660 7.62152 7.76160 7.95187 7.95771 8.06115 8.37587 9.00519 9.58306 11.07805 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024573 B = 0.003133 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.178475 B = 8935.655429 C = 9722.104110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.573 6.573 5 N -0.697 5.697 6 C 0.118 3.882 7 C 0.510 3.490 8 O -0.547 6.547 9 N -0.597 5.597 10 C 0.097 3.903 11 C -0.120 4.120 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.130 4.130 23 C 0.112 3.888 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.418 0.582 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.579 -14.006 -9.238 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.462 6.462 5 N -0.360 5.360 6 C -0.008 4.008 7 C 0.297 3.703 8 O -0.426 6.426 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.158 4.158 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.168 4.168 23 C -0.009 4.009 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.257 0.743 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.619 -14.048 -9.078 20.952 hybrid contribution -0.073 0.927 0.049 0.932 sum -12.692 -13.121 -9.029 20.366 Atomic orbital electron populations 1.23219 0.74175 1.03530 1.02858 1.86250 1.24321 1.30806 1.87054 1.17963 0.83065 0.82302 0.76423 1.91021 1.64652 1.34785 1.55703 1.44230 1.03246 1.10495 1.77983 1.21099 0.89717 0.84602 1.05382 1.20270 0.88425 0.84894 0.76732 1.90677 1.77148 1.23485 1.51301 1.48105 1.07222 1.06229 1.71358 1.22178 0.98262 0.81213 1.00853 1.21994 0.96858 1.00720 0.96182 1.21205 0.94016 0.93191 1.01596 1.19118 0.95723 0.93887 0.92194 1.21190 1.32502 0.92428 1.09550 0.92618 1.25026 0.95208 0.98844 0.95368 1.69953 1.35748 1.34366 1.13359 0.86701 0.78684 0.85245 0.77615 1.20234 1.21372 1.20297 1.22044 1.00508 0.96874 0.97339 1.21749 0.78013 1.01780 0.99407 0.91714 0.91766 0.87904 0.74328 0.87928 0.87693 0.90829 0.90192 0.92074 0.89417 0.92220 0.96626 0.96567 0.92953 0.91975 0.90938 0.89493 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.93 10.62 -40.33 -0.43 -4.36 16 3 C 0.65 8.08 8.75 54.05 0.47 8.56 16 4 O -0.57 -8.50 16.13 -19.28 -0.31 -8.81 16 5 N -0.70 -7.98 5.53 -66.46 -0.37 -8.35 16 6 C 0.12 1.30 4.50 -5.19 -0.02 1.28 16 7 C 0.51 6.65 7.77 -10.98 -0.09 6.56 16 8 O -0.55 -8.48 15.08 5.56 0.08 -8.40 16 9 N -0.60 -7.76 2.97 -172.47 -0.51 -8.28 16 10 C 0.10 1.18 6.37 -3.48 -0.02 1.16 16 11 C -0.12 -1.91 5.21 -26.39 -0.14 -2.04 16 12 C -0.08 -1.48 2.10 -90.58 -0.19 -1.67 16 13 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 14 C -0.52 -13.68 8.39 -34.44 -0.29 -13.97 16 15 H 0.06 1.40 7.06 -52.49 -0.37 1.03 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 18 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.13 -2.03 5.36 -26.59 -0.14 -2.17 16 23 C 0.11 1.52 6.43 -3.69 -0.02 1.50 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.42 4.65 7.55 -40.82 -0.31 4.34 16 28 H 0.10 1.00 7.93 -51.93 -0.41 0.59 16 29 H 0.11 1.12 7.70 -51.93 -0.40 0.72 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -32.24 337.76 -6.63 -38.87 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.31 Total: 1.10 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 0.41 Total: 2.68 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.14 Total: -42.10 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.66 Total: -21.57 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.24 -6.63 -38.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496981918.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.845 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds