Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00501 * 2 1 4 4 O 1.20826 * 119.99489 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00427 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47550 * 179.97438 * 5 3 2 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5 10 10 N 1.46902 * 109.47027 * 179.72353 * 9 7 6 11 11 C 1.46848 * 110.99759 * 294.20938 * 10 9 7 12 12 C 1.53031 * 109.52183 * 174.16278 * 11 10 9 13 13 C 1.53125 * 109.28019 * 59.17805 * 12 11 10 14 14 C 1.50700 * 109.57267 * 182.40843 * 13 12 11 15 15 H 1.07998 * 119.99727 * 119.71375 * 14 13 12 16 16 C 1.37871 * 120.00453 * 299.71254 * 14 13 12 17 17 N 1.31520 * 119.99633 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47061 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47397 * 120.00074 * 18 16 14 21 21 H 1.48497 * 109.47395 * 239.99964 * 18 16 14 22 22 C 1.53118 * 109.15784 * 302.34549 * 13 12 11 23 23 C 1.46843 * 110.99818 * 169.99758 * 10 9 7 24 24 H 1.08999 * 109.47196 * 300.00712 * 1 2 3 25 25 H 1.08999 * 109.46877 * 60.00162 * 1 2 3 26 26 H 1.08990 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47333 * 59.99521 * 5 3 2 28 28 H 1.09002 * 109.47271 * 299.99954 * 5 3 2 29 29 H 0.97000 * 119.99484 * 359.97438 * 6 5 3 30 30 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 31 31 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 32 32 H 1.09003 * 109.45649 * 294.17520 * 11 10 9 33 33 H 1.08995 * 109.46466 * 54.14585 * 11 10 9 34 34 H 1.09001 * 109.50516 * 299.23843 * 12 11 10 35 35 H 1.09000 * 109.50603 * 179.12077 * 12 11 10 36 36 H 1.08994 * 109.51952 * 62.24835 * 13 12 11 37 37 H 0.97001 * 119.99715 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.50142 * 297.71135 * 22 13 12 39 39 H 1.08995 * 109.50409 * 177.59757 * 22 13 12 40 40 H 1.08996 * 109.46300 * 305.85393 * 23 10 9 41 41 H 1.09004 * 109.46280 * 65.83399 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6796 -0.0011 7 6 5.2923 2.9948 -0.0022 8 8 6.1275 2.1154 -0.0023 9 6 5.7196 4.4399 0.0036 10 7 7.1866 4.5167 0.0078 11 6 7.7381 3.9788 1.2580 12 6 9.2653 3.9401 1.1683 13 6 9.7934 5.3564 0.9233 14 6 11.2926 5.3175 0.7750 15 1 11.7534 5.6550 -0.1416 16 6 12.0759 4.8513 1.8093 17 7 11.5146 4.4399 2.9253 18 14 13.9342 4.8038 1.6257 19 1 14.3124 5.3180 0.2849 20 1 14.5571 5.6513 2.6740 21 1 14.4106 3.4050 1.7724 22 6 9.1665 5.9117 -0.3586 23 6 7.6422 5.8932 -0.2247 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 3.9558 0.7808 -0.8907 28 1 3.9565 0.7805 0.8892 29 1 3.3138 3.3829 -0.0014 30 1 5.3323 4.9369 -0.8859 31 1 5.3275 4.9312 0.8940 32 1 7.4392 4.6159 2.0904 33 1 7.3580 2.9699 1.4182 34 1 9.5652 3.2924 0.3446 35 1 9.6751 3.5555 2.1022 36 1 9.5271 5.9952 1.7653 37 1 12.0657 4.1115 3.6529 38 1 9.4649 5.2949 -1.2063 39 1 9.5057 6.9355 -0.5156 40 1 7.1924 6.2746 -1.1414 41 1 7.3439 6.5212 0.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541952504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = -115.312984 kcal Electronic energy + Delta-G solvation = -22393.778412 eV Core-core repulsion = 18887.966283 eV Total energy + Delta-G solvation = -3505.812129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04527 -39.73059 -37.75958 -37.02262 -34.64245 -33.79872 -31.45424 -29.86992 -29.64585 -27.94364 -26.53542 -24.53111 -22.03830 -21.82278 -21.28221 -20.52597 -18.54445 -18.10999 -17.61949 -17.14113 -16.43922 -16.25541 -15.69656 -15.51936 -14.81519 -14.41022 -14.30486 -14.12678 -13.76073 -13.52889 -13.05706 -12.76905 -12.63428 -12.50636 -12.33327 -12.17028 -11.54296 -11.30858 -11.28657 -11.05752 -10.90892 -10.69552 -10.46998 -10.14045 -9.90805 -9.75853 -9.37445 -9.27302 -8.89541 -8.56003 -8.21339 -7.73426 -5.89847 -3.94762 1.65847 1.99685 2.69073 3.08239 3.35652 3.43514 3.47735 4.20673 4.47708 4.52308 4.65030 4.72508 4.81677 4.92858 5.07166 5.11061 5.34985 5.40059 5.42443 5.75110 5.80148 5.91651 6.09050 6.17156 6.28135 6.40447 6.70295 6.79413 6.92439 7.11689 7.16688 7.22542 7.31929 7.53406 7.67246 7.74229 7.90729 8.14753 8.24169 8.25881 8.56813 9.09082 9.69203 11.16451 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039470 B = 0.002852 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.229704 B = 9815.260529 C =10261.300934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.461 3.539 4 O -0.505 6.505 5 C 0.129 3.871 6 N -0.734 5.734 7 C 0.518 3.482 8 O -0.505 6.505 9 C 0.038 3.962 10 N -0.519 5.519 11 C 0.052 3.948 12 C -0.100 4.100 13 C 0.046 3.954 14 C -0.508 4.508 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.106 4.106 23 C 0.061 3.939 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.409 0.591 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.016 0.984 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.258 0.742 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.063 -5.611 -5.162 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.303 3.697 4 O -0.393 6.393 5 C 0.004 3.996 6 N -0.394 5.394 7 C 0.305 3.695 8 O -0.378 6.378 9 C -0.093 4.093 10 N -0.245 5.245 11 C -0.074 4.074 12 C -0.138 4.138 13 C 0.027 3.973 14 C -0.546 4.546 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.066 4.066 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.246 0.754 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -21.434 -6.332 -5.369 22.986 hybrid contribution -0.004 0.782 0.657 1.022 sum -21.438 -5.550 -4.712 22.641 Atomic orbital electron populations 1.23336 0.75566 1.04075 1.02793 1.86494 1.23967 1.32646 1.83838 1.23672 0.92034 0.81736 0.72213 1.90674 1.66895 1.36304 1.45429 1.20574 0.86349 0.86128 1.06540 1.45849 1.08529 1.06669 1.78388 1.20803 0.80853 0.92308 0.75559 1.90742 1.50742 1.49821 1.46471 1.21895 0.92574 0.92176 1.02686 1.61765 1.03509 1.21241 1.37937 1.22447 0.99262 0.98691 0.87033 1.21606 0.89093 1.00070 1.03080 1.18721 0.94462 0.92636 0.91471 1.21244 0.91341 1.41689 1.00348 0.92713 1.24975 0.98364 0.95430 0.95352 1.69899 1.34755 1.43656 1.04824 0.86579 0.86128 0.77569 0.77957 1.19858 1.21225 1.21098 1.21674 0.91206 1.00009 1.01474 1.22160 0.98506 0.87172 0.98766 0.91637 0.91643 0.87721 0.86915 0.86937 0.75376 0.88245 0.92298 0.96542 0.90833 0.93669 0.89062 0.96224 0.93224 0.92347 0.93056 0.92315 0.95633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.86 10.56 -39.25 -0.41 -3.27 16 3 C 0.46 4.20 8.03 36.00 0.29 4.49 16 4 O -0.51 -5.62 15.42 -18.75 -0.29 -5.90 16 5 C 0.13 1.18 6.27 -5.20 -0.03 1.15 16 6 N -0.73 -7.82 5.53 -61.47 -0.34 -8.16 16 7 C 0.52 7.38 7.50 -10.98 -0.08 7.30 16 8 O -0.51 -9.28 14.33 5.55 0.08 -9.20 16 9 C 0.04 0.53 5.45 -4.97 -0.03 0.50 16 10 N -0.52 -9.59 4.40 -236.12 -1.04 -10.63 16 11 C 0.05 1.11 5.11 -3.84 -0.02 1.09 16 12 C -0.10 -2.51 5.12 -26.65 -0.14 -2.64 16 13 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 14 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 17 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.11 -2.26 5.32 -26.65 -0.14 -2.40 16 23 C 0.06 1.10 5.46 -3.84 -0.02 1.08 16 24 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 25 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 26 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.41 3.79 7.44 -40.82 -0.30 3.48 16 30 H 0.10 1.12 7.99 -51.93 -0.41 0.70 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.57 5.78 -51.93 -0.30 1.27 16 34 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 2.52 6.17 -51.93 -0.32 2.20 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.89 8.01 -51.93 -0.42 0.47 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -33.36 336.42 -7.38 -40.75 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.37 Total: 0.21 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 0.31 Total: -0.22 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.75 Total: -44.21 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.62 Total: -18.37 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.36 -7.38 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541952504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.568 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds