Wall clock time and date at job start Tue Mar 31 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00501 * 2 1 4 4 O 1.20826 * 119.99489 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00427 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47550 * 179.97438 * 5 3 2 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5 10 10 N 1.46902 * 109.47027 * 179.72353 * 9 7 6 11 11 C 1.46848 * 110.99759 * 294.20938 * 10 9 7 12 12 C 1.53031 * 109.52183 * 174.16278 * 11 10 9 13 13 C 1.53125 * 109.28019 * 59.17805 * 12 11 10 14 14 C 1.50700 * 109.57267 * 182.40843 * 13 12 11 15 15 H 1.07998 * 119.99727 * 119.71375 * 14 13 12 16 16 C 1.37871 * 120.00453 * 299.71254 * 14 13 12 17 17 N 1.31520 * 119.99633 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47061 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47397 * 120.00074 * 18 16 14 21 21 H 1.48497 * 109.47395 * 239.99964 * 18 16 14 22 22 C 1.53118 * 109.15784 * 302.34549 * 13 12 11 23 23 C 1.46843 * 110.99818 * 169.99758 * 10 9 7 24 24 H 1.08999 * 109.47196 * 300.00712 * 1 2 3 25 25 H 1.08999 * 109.46877 * 60.00162 * 1 2 3 26 26 H 1.08990 * 109.47610 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47333 * 59.99521 * 5 3 2 28 28 H 1.09002 * 109.47271 * 299.99954 * 5 3 2 29 29 H 0.97000 * 119.99484 * 359.97438 * 6 5 3 30 30 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 31 31 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 32 32 H 1.09003 * 109.45649 * 294.17520 * 11 10 9 33 33 H 1.08995 * 109.46466 * 54.14585 * 11 10 9 34 34 H 1.09001 * 109.50516 * 299.23843 * 12 11 10 35 35 H 1.09000 * 109.50603 * 179.12077 * 12 11 10 36 36 H 1.08994 * 109.51952 * 62.24835 * 13 12 11 37 37 H 0.97001 * 119.99715 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.50142 * 297.71135 * 22 13 12 39 39 H 1.08995 * 109.50409 * 177.59757 * 22 13 12 40 40 H 1.08996 * 109.46300 * 305.85393 * 23 10 9 41 41 H 1.09004 * 109.46280 * 65.83399 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9819 2.6796 -0.0011 7 6 5.2923 2.9948 -0.0022 8 8 6.1275 2.1154 -0.0023 9 6 5.7196 4.4399 0.0036 10 7 7.1866 4.5167 0.0078 11 6 7.7381 3.9788 1.2580 12 6 9.2653 3.9401 1.1683 13 6 9.7934 5.3564 0.9233 14 6 11.2926 5.3175 0.7750 15 1 11.7534 5.6550 -0.1416 16 6 12.0759 4.8513 1.8093 17 7 11.5146 4.4399 2.9253 18 14 13.9342 4.8038 1.6257 19 1 14.3124 5.3180 0.2849 20 1 14.5571 5.6513 2.6740 21 1 14.4106 3.4050 1.7724 22 6 9.1665 5.9117 -0.3586 23 6 7.6422 5.8932 -0.2247 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 3.9558 0.7808 -0.8907 28 1 3.9565 0.7805 0.8892 29 1 3.3138 3.3829 -0.0014 30 1 5.3323 4.9369 -0.8859 31 1 5.3275 4.9312 0.8940 32 1 7.4392 4.6159 2.0904 33 1 7.3580 2.9699 1.4182 34 1 9.5652 3.2924 0.3446 35 1 9.6751 3.5555 2.1022 36 1 9.5271 5.9952 1.7653 37 1 12.0657 4.1115 3.6529 38 1 9.4649 5.2949 -1.2063 39 1 9.5057 6.9355 -0.5156 40 1 7.1924 6.2746 -1.1414 41 1 7.3439 6.5212 0.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541952504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:29 Heat of formation + Delta-G solvation = -139.612302 kcal Electronic energy + Delta-G solvation = -22394.832109 eV Core-core repulsion = 18887.966283 eV Total energy + Delta-G solvation = -3506.865826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79220 -40.86716 -39.24630 -37.76950 -35.75917 -35.51163 -33.30241 -31.41407 -30.75441 -28.98355 -27.67308 -26.16409 -23.74988 -23.30535 -22.21806 -21.57041 -20.34085 -18.96869 -18.44115 -18.35042 -17.82335 -17.49676 -16.69840 -16.57477 -16.51917 -15.93600 -15.53220 -15.21289 -14.90615 -14.58863 -14.41186 -14.24945 -14.05647 -13.79823 -13.71857 -13.05476 -12.98595 -12.84361 -12.81728 -12.53139 -12.31196 -11.99423 -11.88258 -11.83479 -11.79563 -11.35062 -11.05161 -10.78152 -10.52283 -10.36920 -10.23790 -9.15363 -8.06191 -6.19322 0.94942 1.29794 1.40316 1.42104 1.53727 1.61337 2.21746 2.45102 3.11421 3.20749 3.55809 3.85740 4.16539 4.21456 4.27249 4.31348 4.32969 4.34436 4.37044 4.43959 4.54218 4.64266 4.71423 4.81528 4.95182 5.03762 5.11122 5.16588 5.25415 5.28499 5.36599 5.61190 5.64555 6.00618 6.03238 6.19536 6.31984 6.43374 6.45784 6.53210 6.93052 7.21464 7.48182 8.98706 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039470 B = 0.002852 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.229704 B = 9815.260529 C =10261.300934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.527 6.527 5 C 0.127 3.873 6 N -0.718 5.718 7 C 0.520 3.480 8 O -0.554 6.554 9 C 0.037 3.963 10 N -0.535 5.535 11 C 0.069 3.931 12 C -0.091 4.091 13 C 0.042 3.958 14 C -0.531 4.531 15 H 0.052 0.948 16 C 0.008 3.992 17 N -0.919 5.919 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.282 1.282 22 C -0.101 4.101 23 C 0.067 3.933 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.419 0.581 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.015 0.985 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.056 0.944 36 H -0.008 1.008 37 H 0.259 0.741 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.676 -5.197 -6.219 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.416 6.416 5 C 0.002 3.998 6 N -0.377 5.377 7 C 0.307 3.693 8 O -0.431 6.431 9 C -0.094 4.094 10 N -0.261 5.261 11 C -0.058 4.058 12 C -0.129 4.129 13 C 0.024 3.976 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.559 5.559 18 Si 0.780 3.220 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.208 1.208 22 C -0.139 4.139 23 C -0.060 4.060 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.150 0.850 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.258 0.742 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.010 0.990 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -23.106 -5.910 -6.439 24.704 hybrid contribution 0.404 0.609 0.983 1.225 sum -22.703 -5.300 -5.457 23.943 Atomic orbital electron populations 1.23627 0.73923 1.05998 1.02883 1.86486 1.25560 1.31897 1.83382 1.23526 0.91784 0.81766 0.71583 1.90667 1.67308 1.36983 1.46649 1.20666 0.86684 0.85249 1.07201 1.45651 1.07606 1.07763 1.76694 1.20888 0.81366 0.92119 0.74901 1.90734 1.52198 1.51000 1.49155 1.22050 0.89409 0.92479 1.05429 1.61592 1.06763 1.21621 1.36077 1.22080 0.96249 0.98863 0.88633 1.21356 0.92308 0.99115 1.00154 1.18695 0.93762 0.92501 0.92682 1.21639 0.93129 1.41817 1.00325 0.93013 1.25784 1.02997 0.95096 0.95097 1.70040 1.36313 1.44119 1.05440 0.85561 0.80600 0.77586 0.78240 1.19098 1.20497 1.20847 1.21550 0.94088 0.99827 0.98432 1.22113 0.95793 0.87085 1.00970 0.91640 0.91488 0.84978 0.86131 0.86510 0.74246 0.84584 0.90131 0.96685 0.91216 0.95981 0.92509 0.99027 0.93180 0.93398 0.92188 0.88271 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.17 10.56 -51.37 -0.54 -5.71 16 3 C 0.47 7.82 8.03 71.23 0.57 8.39 16 4 O -0.53 -10.80 15.42 21.96 0.34 -10.46 16 5 C 0.13 2.13 6.27 85.63 0.54 2.67 16 6 N -0.72 -13.81 5.53 -466.79 -2.58 -16.39 16 7 C 0.52 13.87 7.50 87.66 0.66 14.53 16 8 O -0.55 -20.11 14.33 -3.04 -0.04 -20.15 16 9 C 0.04 0.91 5.45 85.56 0.47 1.37 16 10 N -0.54 -18.86 4.40 -900.94 -3.96 -22.82 16 11 C 0.07 2.94 5.11 86.32 0.44 3.38 16 12 C -0.09 -4.72 5.12 30.65 0.16 -4.56 16 13 C 0.04 2.21 2.16 -11.46 -0.02 2.19 16 14 C -0.53 -30.59 8.56 25.60 0.22 -30.37 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.01 0.48 5.31 84.65 0.45 0.93 16 17 N -0.92 -55.28 11.37 21.45 0.24 -55.04 16 18 Si 0.95 45.34 29.54 68.60 2.03 47.36 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 C -0.10 -4.27 5.32 30.65 0.16 -4.10 16 23 C 0.07 2.24 5.46 86.33 0.47 2.71 16 24 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 25 H 0.07 0.58 8.13 -2.39 -0.02 0.56 16 26 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.42 6.63 7.44 -92.71 -0.69 5.94 16 30 H 0.14 2.39 7.99 -2.38 -0.02 2.37 16 31 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 3.02 5.78 -2.39 -0.01 3.00 16 34 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 3.30 6.17 -2.39 -0.01 3.29 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.10 2.55 8.01 -2.39 -0.02 2.53 16 41 H 0.03 1.02 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -74.23 336.42 1.12 -73.11 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.34 Total: 11.52 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.30 Total: -1.42 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -6.30 Total: -94.25 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.25 Total: -36.32 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -74.23 1.12 -73.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541952504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.502 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds