Wall clock time and date at job start Tue Mar 31 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99781 * 2 1 4 4 C 1.50700 * 109.47117 * 90.00000 * 3 2 1 5 5 H 1.07999 * 119.99903 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99970 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99992 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00194 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46832 * 89.99908 * 8 6 4 10 10 H 1.48493 * 109.47402 * 209.99771 * 8 6 4 11 11 H 1.48498 * 109.47010 * 330.00235 * 8 6 4 12 12 C 1.34778 * 120.00126 * 179.97438 * 2 1 3 13 13 O 1.21287 * 119.99727 * 179.97438 * 12 2 1 14 14 C 1.50693 * 119.99964 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.47005 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.47057 * 182.33141 * 15 14 12 17 17 C 1.47847 * 110.99794 * 295.00261 * 16 15 14 18 18 C 1.54906 * 104.79448 * 213.63621 * 17 16 15 19 19 C 1.55137 * 101.65257 * 37.07300 * 18 17 16 20 20 C 1.47438 * 110.99927 * 174.16251 * 16 15 14 21 21 C 1.53005 * 109.88959 * 242.66437 * 20 16 15 22 22 C 1.52999 * 109.89003 * 3.84845 * 20 16 15 23 23 O 1.42896 * 109.47608 * 175.27123 * 22 20 16 24 24 H 1.08997 * 109.47008 * 90.00015 * 1 2 3 25 25 H 1.08996 * 109.46575 * 209.99866 * 1 2 3 26 26 H 1.08996 * 109.47092 * 329.99569 * 1 2 3 27 27 H 1.09000 * 109.47150 * 330.00283 * 3 2 1 28 28 H 1.08998 * 109.47085 * 209.99903 * 3 2 1 29 29 H 0.97002 * 119.99617 * 179.97438 * 7 6 4 30 30 H 1.08991 * 109.47517 * 300.00259 * 14 12 2 31 31 H 1.09002 * 109.47041 * 60.00036 * 14 12 2 32 32 H 1.08995 * 109.47134 * 302.33377 * 15 14 12 33 33 H 1.08999 * 109.46761 * 62.32873 * 15 14 12 34 34 H 1.08999 * 110.37620 * 332.46725 * 17 16 15 35 35 H 1.09003 * 110.37140 * 94.69992 * 17 16 15 36 36 H 1.08993 * 110.99077 * 155.16396 * 18 17 16 37 37 H 1.09003 * 110.99244 * 278.94536 * 18 17 16 38 38 H 1.08999 * 110.71000 * 82.72574 * 19 18 17 39 39 H 1.09007 * 110.70727 * 205.96735 * 19 18 17 40 40 H 1.09002 * 109.47055 * 59.99790 * 21 20 16 41 41 H 1.08995 * 109.47367 * 179.97438 * 21 20 16 42 42 H 1.09002 * 109.46689 * 300.00193 * 21 20 16 43 43 H 1.09001 * 109.47509 * 295.26893 * 22 20 16 44 44 H 1.09003 * 109.47027 * 55.26977 * 22 20 16 45 45 H 0.96698 * 114.00801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5550 3.6172 0.6731 8 14 3.4376 3.4172 3.4339 9 1 4.7321 2.8595 3.9014 10 1 3.4861 4.9000 3.4960 11 1 2.3416 2.9208 4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0001 14 6 1.3855 -2.4723 0.0017 15 6 2.3798 -3.6352 0.0014 16 7 1.6462 -4.9067 -0.0538 17 6 0.8387 -5.1060 1.1686 18 6 0.8575 -6.6360 1.4100 19 6 2.3036 -7.0026 0.9846 20 6 2.5721 -6.0452 -0.1956 21 6 2.3121 -6.7658 -1.5200 22 6 4.0186 -5.5492 -0.1447 23 8 4.9071 -6.6680 -0.1720 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6084 2.0284 -0.5138 28 1 3.1499 1.1385 -0.5138 29 1 4.0318 4.4431 0.8504 30 1 0.7592 -2.5294 0.8918 31 1 0.7585 -2.5306 -0.8880 32 1 3.0330 -3.5545 -0.8674 33 1 2.9793 -3.6007 0.9111 34 1 1.2909 -4.5833 2.0115 35 1 -0.1819 -4.7576 1.0102 36 1 0.6893 -6.8674 2.4617 37 1 0.1248 -7.1398 0.7795 38 1 3.0039 -6.8164 1.7989 39 1 2.3578 -8.0413 0.6581 40 1 2.4653 -6.0725 -2.3470 41 1 3.0001 -7.6055 -1.6180 42 1 1.2858 -7.1325 -1.5387 43 1 4.2138 -4.9093 -1.0052 44 1 4.1763 -4.9824 0.7729 45 1 5.8433 -6.4277 -0.1421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545398451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:01 Heat of formation + Delta-G solvation = -105.499452 kcal Electronic energy + Delta-G solvation = -23481.135107 eV Core-core repulsion = 20111.581619 eV Total energy + Delta-G solvation = -3369.553488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.27708 -40.37019 -37.33254 -36.62005 -34.84855 -34.39284 -32.53814 -30.86534 -29.26370 -27.83898 -27.26654 -25.81689 -25.35926 -23.62214 -22.00591 -19.90548 -19.74608 -18.71260 -18.41430 -17.87604 -17.08071 -16.92185 -16.68203 -16.41183 -16.00204 -15.68216 -15.28058 -14.70294 -14.62825 -14.18687 -14.10097 -14.00725 -13.64859 -13.45455 -13.24575 -13.17161 -13.10614 -12.89484 -12.76020 -12.58563 -12.57359 -12.21316 -12.18584 -12.00566 -11.85204 -11.70110 -11.54719 -11.41608 -10.92456 -10.66609 -10.61150 -9.43047 -9.37444 -8.23909 -6.39182 1.35247 1.38085 1.48007 1.83445 2.26582 2.40513 2.84477 3.05515 3.27263 3.60294 3.74470 3.86361 3.92717 4.04328 4.06021 4.26443 4.27764 4.36902 4.39920 4.51548 4.60158 4.66457 4.72030 4.78985 4.82481 4.93277 4.95738 4.98103 5.00832 5.02513 5.06644 5.10896 5.20126 5.22450 5.30314 5.46290 5.54902 5.83246 5.98195 6.02219 6.04681 6.68150 6.74873 6.78809 7.26667 7.47505 8.83198 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.022760 B = 0.003634 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.930112 B = 7704.184013 C = 7935.986446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.261 1.261 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.115 4.115 15 C 0.069 3.931 16 N -0.512 5.512 17 C 0.031 3.969 18 C -0.122 4.122 19 C -0.121 4.121 20 C 0.094 3.906 21 C -0.115 4.115 22 C 0.067 3.933 23 O -0.576 6.576 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.023 0.977 28 H -0.004 1.004 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 -21.404 -0.312 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.185 1.185 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.155 4.155 15 C -0.059 4.059 16 N -0.238 5.238 17 C -0.096 4.096 18 C -0.160 4.160 19 C -0.159 4.159 20 C 0.005 3.995 21 C -0.173 4.173 22 C -0.012 4.012 23 O -0.383 6.383 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.015 0.985 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.393 -21.515 -0.830 23.109 hybrid contribution 1.834 1.393 1.339 2.664 sum -6.560 -20.121 0.509 21.170 Atomic orbital electron populations 1.21939 0.77757 1.04014 1.02638 1.48201 1.08499 1.06378 1.71125 1.18753 0.91077 0.80513 0.96021 1.21708 1.36873 1.06582 0.93028 0.92852 1.25877 0.94879 0.96405 1.02038 1.70057 1.38863 1.14866 1.33084 0.85411 0.78645 0.77601 0.79135 1.20681 1.19878 1.18498 1.21361 0.87796 0.86715 0.75799 1.90625 1.16713 1.88287 1.52737 1.21536 0.98821 0.88846 1.06253 1.21881 0.94841 0.88596 1.00593 1.63787 1.21791 1.00288 1.37895 1.23279 0.99174 0.97155 0.90012 1.22719 0.96348 0.94423 1.02528 1.22710 0.97061 0.99803 0.96365 1.21790 0.88599 0.91167 0.97958 1.21620 1.01996 0.99262 0.94412 1.22743 0.91038 0.88076 0.99302 1.86356 1.21016 1.33426 1.97502 0.91105 0.88662 0.91645 0.95884 0.98545 0.92374 0.87226 0.86188 0.91340 0.95618 0.94198 0.88207 0.89514 0.89497 0.92430 0.89852 0.93451 0.91920 0.91369 0.93832 0.94653 0.75619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.10 2.86 -851.13 -2.43 -28.53 16 3 C 0.26 14.14 5.16 85.63 0.44 14.58 16 4 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 8 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 C 0.49 20.59 7.67 87.65 0.67 21.26 16 13 O -0.60 -31.36 15.55 -3.05 -0.05 -31.41 16 14 C -0.11 -3.19 4.19 29.85 0.13 -3.06 16 15 C 0.07 1.96 2.97 86.30 0.26 2.21 16 16 N -0.51 -11.44 4.82 -836.49 -4.03 -15.48 16 17 C 0.03 0.57 5.62 86.77 0.49 1.06 16 18 C -0.12 -1.84 7.08 31.98 0.23 -1.61 16 19 C -0.12 -2.25 5.63 31.77 0.18 -2.07 16 20 C 0.09 2.03 0.97 3.87 0.00 2.04 16 21 C -0.12 -2.28 8.60 71.98 0.62 -1.66 16 22 C 0.07 1.61 4.56 71.98 0.33 1.94 16 23 O -0.58 -12.13 12.74 -148.98 -1.90 -14.03 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 2.08 6.44 -2.39 -0.02 2.07 16 26 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 27 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 28 H 0.00 -0.23 7.42 -2.39 -0.02 -0.24 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.11 2.55 6.69 -2.39 -0.02 2.54 16 31 H 0.12 2.78 8.11 -2.39 -0.02 2.76 16 32 H 0.07 2.16 6.34 -2.39 -0.02 2.15 16 33 H 0.03 0.82 6.59 -2.39 -0.02 0.81 16 34 H 0.04 0.82 7.69 -2.39 -0.02 0.80 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.18 7.85 -2.39 -0.02 1.16 16 39 H 0.08 1.43 7.83 -2.38 -0.02 1.41 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.22 7.79 -2.39 -0.02 1.20 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 43 H 0.04 1.13 6.72 -2.39 -0.02 1.11 16 44 H 0.04 0.94 6.59 -2.39 -0.02 0.92 16 45 H 0.39 5.39 9.12 -74.06 -0.68 4.71 16 Total: -1.00 -75.38 353.94 -0.46 -75.84 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.29 Total: 15.18 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.35 Total: 7.75 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.18 Total: -100.43 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.95 Total: -45.43 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.38 -0.46 -75.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545398451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.661 kcal (2) G-P(sol) polarization free energy of solvation -75.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds