Wall clock time and date at job start Tue Mar 31 2020 03:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46852 * 300.00233 * 3 2 1 6 6 H 1.48499 * 109.46793 * 59.99782 * 3 2 1 7 7 C 1.37881 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46981 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46803 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46803 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46727 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00145 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99435 * 180.02562 * 13 12 11 16 16 C 1.47085 * 120.87822 * 180.02562 * 15 13 12 17 17 C 1.53237 * 108.52376 * 128.83427 * 16 15 13 18 18 N 1.46893 * 109.34211 * 53.82363 * 17 16 15 19 19 C 1.46903 * 111.00050 * 172.74839 * 18 17 16 20 20 C 1.52995 * 109.47511 * 176.40837 * 19 18 17 21 21 O 1.42904 * 109.47026 * 62.14452 * 20 19 18 22 22 C 1.46898 * 111.26966 * 296.89604 * 18 17 16 23 23 C 1.47077 * 120.88417 * 0.02562 * 15 13 12 24 24 H 0.96999 * 119.99815 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47429 * 59.99391 * 9 7 2 26 26 H 1.08997 * 109.46575 * 299.99158 * 9 7 2 27 27 H 1.09000 * 109.46717 * 59.99170 * 10 9 7 28 28 H 1.09004 * 109.46612 * 299.99314 * 10 9 7 29 29 H 1.08999 * 109.47272 * 59.99811 * 11 10 9 30 30 H 1.08997 * 109.46911 * 299.99468 * 11 10 9 31 31 H 1.09003 * 109.46877 * 59.99980 * 12 11 10 32 32 H 1.09004 * 109.46612 * 299.99616 * 12 11 10 33 33 H 1.08993 * 109.62764 * 9.11727 * 16 15 13 34 34 H 1.09004 * 109.78082 * 248.63570 * 16 15 13 35 35 H 1.08998 * 109.49445 * 173.79121 * 17 16 15 36 36 H 1.09001 * 109.48605 * 293.86353 * 17 16 15 37 37 H 1.08995 * 109.47343 * 296.40943 * 19 18 17 38 38 H 1.09005 * 109.46818 * 56.40620 * 19 18 17 39 39 H 1.08993 * 109.47430 * 182.15228 * 20 19 18 40 40 H 1.09008 * 109.46989 * 302.15388 * 20 19 18 41 41 H 0.96702 * 113.99881 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.49952 * 303.14545 * 22 18 17 43 43 H 1.09006 * 109.51320 * 183.07919 * 22 18 17 44 44 H 1.09002 * 109.63141 * 350.88249 * 23 15 13 45 45 H 1.09003 * 109.62540 * 111.45911 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1501 0.0005 13 6 1.7207 -7.4552 0.0005 14 8 0.5079 -7.4551 0.0015 15 7 2.3946 -8.6224 0.0005 16 6 1.6788 -9.9073 0.0000 17 6 2.2383 -10.7757 -1.1318 18 7 3.6969 -10.8773 -0.9915 19 6 4.2526 -11.8388 -1.9532 20 6 5.7782 -11.8512 -1.8384 21 8 6.1539 -12.2805 -0.5282 22 6 4.3385 -9.5632 -1.1306 23 6 3.8652 -8.6450 0.0011 24 1 -0.4850 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8717 -3.6045 -0.8896 29 1 0.8531 -5.0451 -0.8885 30 1 0.8538 -5.0446 0.8914 31 1 3.1016 -6.0923 0.8901 32 1 3.1003 -6.0924 -0.8900 33 1 0.6152 -9.7338 -0.1631 34 1 1.8253 -10.4116 0.9552 35 1 1.7974 -11.7712 -1.0784 36 1 1.9960 -10.3213 -2.0925 37 1 3.8640 -12.8341 -1.7377 38 1 3.9666 -11.5481 -2.9641 39 1 6.1927 -12.5362 -2.5780 40 1 6.1641 -10.8474 -2.0164 41 1 7.1095 -12.3128 -0.3838 42 1 4.0671 -9.1257 -2.0914 43 1 5.4210 -9.6789 -1.0765 44 1 4.2471 -7.6371 -0.1612 45 1 4.2251 -9.0265 0.9567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588156894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:08 Heat of formation + Delta-G solvation = -91.781715 kcal Electronic energy + Delta-G solvation = -22418.607433 eV Core-core repulsion = 19049.648791 eV Total energy + Delta-G solvation = -3368.958642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35032 -38.67094 -36.91587 -34.91638 -34.66294 -32.67842 -31.64378 -30.16438 -29.51276 -26.83445 -25.38793 -24.16625 -22.84244 -21.86320 -20.91684 -19.98187 -18.90048 -17.85256 -17.22797 -16.28357 -16.17739 -15.82396 -15.70428 -15.48671 -15.02778 -14.46298 -14.42375 -14.31719 -13.76564 -13.54084 -13.31546 -12.71563 -12.45922 -12.44254 -12.09699 -11.98958 -11.72791 -11.66238 -11.49380 -11.46448 -11.05168 -10.98121 -10.51397 -10.46663 -10.39209 -10.35851 -9.71540 -9.58973 -9.19662 -8.96046 -8.94860 -8.53661 -8.29239 -5.93753 -3.96129 2.72995 2.87181 3.34027 3.41106 3.43722 3.45098 3.83252 4.42329 4.48864 4.50468 4.57881 4.70985 4.78775 4.88707 4.91953 4.99054 5.05986 5.20026 5.23526 5.32774 5.37265 5.38921 5.41609 5.43466 5.54362 5.59819 5.77887 5.89106 6.16519 6.29310 6.38079 6.57257 6.59353 6.65028 6.86853 7.04423 7.22191 7.23845 7.36873 7.76360 7.92418 8.08009 8.25320 8.49773 9.11864 9.67426 11.17648 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.002501 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.431783 B =11193.935640 C =11840.170004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.515 3.485 14 O -0.536 6.536 15 N -0.622 5.622 16 C 0.116 3.884 17 C 0.042 3.958 18 N -0.527 5.527 19 C 0.054 3.946 20 C 0.074 3.926 21 O -0.558 6.558 22 C 0.035 3.965 23 C 0.113 3.887 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.375 0.625 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.960 -26.915 -3.763 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.412 6.412 15 N -0.358 5.358 16 C -0.006 4.006 17 C -0.087 4.087 18 N -0.252 5.252 19 C -0.073 4.073 20 C -0.004 4.004 21 O -0.362 6.362 22 C -0.094 4.094 23 C -0.010 4.010 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.221 0.779 42 H 0.056 0.944 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.584 -26.990 -3.223 29.547 hybrid contribution 0.995 1.174 -1.010 1.841 sum 12.579 -25.816 -4.233 29.028 Atomic orbital electron populations 1.69986 1.06048 1.26373 1.51064 1.25051 0.94842 0.99242 0.95509 0.86557 0.80072 0.83946 0.77535 1.19787 1.21071 1.21053 1.21322 0.93002 0.91188 1.50202 0.92714 1.19105 0.94079 0.91289 0.97320 1.21646 0.99059 0.94005 1.00017 1.21461 0.97024 0.92696 1.02940 1.21815 1.00114 0.92082 1.03691 1.21114 0.88209 0.85366 0.74884 1.90691 1.14163 1.87207 1.49165 1.48262 1.06837 1.05914 1.74772 1.21606 0.97629 0.82950 0.98464 1.22505 0.87823 1.00478 0.97887 1.61917 1.04009 1.08267 1.51052 1.22164 0.93705 0.97605 0.93859 1.22285 0.94877 0.98276 0.84994 1.86629 1.27805 1.90272 1.31490 1.22603 1.00017 0.89089 0.97641 1.21817 0.79674 1.00283 0.99225 0.93111 0.96616 0.96562 0.93467 0.93545 0.91884 0.91772 0.89128 0.89339 0.88672 0.90914 0.89579 0.94378 0.89755 0.93486 0.93308 0.93288 0.77906 0.94426 0.89097 0.88927 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.92 4.07 -27.88 -0.11 -2.03 16 13 C 0.51 7.72 7.71 -10.99 -0.08 7.64 16 14 O -0.54 -10.20 15.44 5.56 0.09 -10.11 16 15 N -0.62 -7.34 3.01 -172.47 -0.52 -7.86 16 16 C 0.12 1.25 6.60 -3.60 -0.02 1.22 16 17 C 0.04 0.37 5.62 -3.71 -0.02 0.35 16 18 N -0.53 -4.49 4.64 -234.34 -1.09 -5.57 16 19 C 0.05 0.37 5.51 -3.82 -0.02 0.35 16 20 C 0.07 0.40 6.68 37.16 0.25 0.65 16 21 O -0.56 -3.84 13.56 -35.23 -0.48 -4.32 16 22 C 0.04 0.28 5.23 -3.71 -0.02 0.26 16 23 C 0.11 1.01 6.50 -3.61 -0.02 0.98 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 32 H 0.09 1.07 7.66 -51.93 -0.40 0.67 16 33 H 0.10 1.15 7.06 -51.93 -0.37 0.78 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.05 0.23 6.03 -51.92 -0.31 -0.08 16 41 H 0.37 0.97 9.12 45.56 0.42 1.38 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.59 5.72 -51.93 -0.30 0.30 16 44 H 0.09 0.71 6.02 -51.93 -0.31 0.40 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -35.77 357.43 -8.90 -44.67 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.14 Total: -3.63 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.87 Total: -8.55 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.87 Total: -40.45 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.39 Total: -14.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.77 -8.90 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588156894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.113 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds