Wall clock time and date at job start Tue Mar 31 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 C 1.53003 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47092 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99968 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99836 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47527 * 59.99944 * 8 6 5 10 10 C 1.53007 * 109.47370 * 300.00030 * 8 6 5 11 11 N 1.46895 * 109.47180 * 180.02562 * 8 6 5 12 12 C 1.47900 * 111.00149 * 300.12359 * 11 8 6 13 13 C 1.53989 * 107.06153 * 145.84095 * 12 11 8 14 14 C 1.54593 * 105.13799 * 358.77953 * 13 12 11 15 15 O 1.42907 * 110.72410 * 96.39797 * 14 13 12 16 16 C 1.50697 * 110.72544 * 219.68085 * 14 13 12 17 17 H 1.08002 * 119.99928 * 24.86552 * 16 14 13 18 18 C 1.37882 * 120.00623 * 204.86619 * 16 14 13 19 19 N 1.31511 * 120.00356 * 173.72229 * 18 16 14 20 20 Si 1.86804 * 119.99362 * 353.71962 * 18 16 14 21 21 H 1.48499 * 109.46906 * 87.22447 * 20 18 16 22 22 H 1.48498 * 109.46836 * 207.22495 * 20 18 16 23 23 H 1.48500 * 109.47213 * 327.22542 * 20 18 16 24 24 C 1.48537 * 111.00268 * 57.52264 * 11 8 6 25 25 H 1.09008 * 109.46565 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46911 * 299.99730 * 1 2 3 27 27 H 1.08994 * 109.46996 * 60.00574 * 1 2 3 28 28 H 1.09001 * 109.47327 * 239.99455 * 2 1 3 29 29 H 1.09007 * 109.46773 * 119.99687 * 2 1 3 30 30 H 1.09004 * 109.46957 * 60.00038 * 3 2 1 31 31 H 1.08997 * 109.47309 * 299.99550 * 3 2 1 32 32 H 1.08998 * 109.47568 * 59.99910 * 4 3 2 33 33 H 1.09007 * 109.46773 * 299.99687 * 4 3 2 34 34 H 0.97004 * 119.99641 * 0.02562 * 5 4 3 35 35 H 1.09010 * 109.46418 * 59.99963 * 10 8 6 36 36 H 1.08998 * 109.47178 * 179.97438 * 10 8 6 37 37 H 1.08994 * 109.46938 * 300.00715 * 10 8 6 38 38 H 1.09010 * 109.91308 * 26.48993 * 12 11 8 39 39 H 1.09003 * 110.08470 * 265.29261 * 12 11 8 40 40 H 1.09006 * 110.30946 * 117.69306 * 13 12 11 41 41 H 1.09000 * 110.31220 * 239.86503 * 13 12 11 42 42 H 0.96703 * 113.99930 * 56.21163 * 15 14 13 43 43 H 0.97004 * 120.00013 * 180.02562 * 19 18 16 44 44 H 1.08999 * 110.66174 * 318.71434 * 24 11 8 45 45 H 1.08992 * 110.66705 * 81.84254 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1715 2.1482 0.0018 8 6 5.8857 4.4908 -0.0003 9 1 5.5216 5.0057 0.8888 10 6 5.3768 5.2106 -1.2509 11 7 7.3546 4.4908 0.0005 12 6 7.8841 3.7992 1.1957 13 6 9.1835 3.0912 0.7695 14 6 9.3352 3.3990 -0.7379 15 8 10.2037 4.5156 -0.9411 16 6 9.8377 2.1884 -1.4815 17 1 9.6651 1.1997 -1.0827 18 6 10.5178 2.3430 -2.6709 19 7 11.0632 1.2996 -3.2569 20 14 10.6644 4.0345 -3.4498 21 1 11.8535 4.7322 -2.8980 22 1 10.8127 3.8910 -4.9204 23 1 9.4434 4.8249 -3.1503 24 6 7.8876 3.7451 -1.1683 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9286 -0.8891 33 1 3.9329 0.9288 0.8910 34 1 3.4279 3.5610 -0.0003 35 1 4.2867 5.2106 -1.2518 36 1 5.7398 6.2384 -1.2515 37 1 5.7409 4.6957 -2.1398 38 1 7.1607 3.0651 1.5509 39 1 8.0963 4.5222 1.9834 40 1 10.0320 3.4914 1.3246 41 1 9.0988 2.0164 0.9294 42 1 11.0800 4.4093 -0.5461 43 1 11.5420 1.4084 -4.0935 44 1 7.3102 2.8369 -1.3409 45 1 7.8908 4.3750 -2.0577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:18 Heat of formation + Delta-G solvation = -82.135645 kcal Electronic energy + Delta-G solvation = -23950.413354 eV Core-core repulsion = 20581.872997 eV Total energy + Delta-G solvation = -3368.540357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38972 -37.96037 -36.31306 -35.03773 -33.90928 -32.21706 -32.06318 -29.16072 -28.33161 -27.75621 -25.01795 -24.06752 -22.55662 -21.56959 -20.87683 -19.63679 -19.44582 -17.29570 -16.86301 -16.20272 -16.10289 -15.30530 -14.91591 -14.85266 -14.43908 -14.05064 -13.86697 -13.77235 -13.39187 -13.28755 -12.73389 -12.60795 -12.31602 -12.28345 -11.92373 -11.71670 -11.52033 -11.43059 -11.40517 -11.19780 -10.99425 -10.88377 -10.85342 -10.43667 -10.24082 -9.99641 -9.91807 -9.76872 -8.99243 -8.92869 -8.39769 -8.24466 -7.62289 -6.00101 -4.08507 2.81615 3.24945 3.59497 3.64233 3.85512 4.45788 4.56019 4.63196 4.67681 4.73339 4.95034 5.08368 5.14139 5.25404 5.27226 5.29551 5.36891 5.46284 5.48103 5.61431 5.65840 5.72708 5.73152 5.81923 5.88003 5.95974 5.96882 6.02714 6.21611 6.25569 6.38017 6.52465 6.52685 6.80860 6.95191 7.04103 7.26679 7.45172 7.46377 7.69871 7.80684 8.36033 8.41086 8.90145 9.06483 9.63818 11.09485 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.004373 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.838201 B = 6401.734810 C = 6829.328719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.736 5.736 6 C 0.477 3.523 7 O -0.509 6.509 8 C 0.054 3.946 9 H 0.099 0.901 10 C -0.139 4.139 11 N -0.493 5.493 12 C 0.039 3.961 13 C -0.138 4.138 14 C 0.228 3.772 15 O -0.558 6.558 16 C -0.542 4.542 17 H 0.077 0.923 18 C 0.068 3.932 19 N -0.896 5.896 20 Si 0.949 3.051 21 H -0.294 1.294 22 H -0.330 1.330 23 H -0.267 1.267 24 C 0.038 3.962 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.364 0.636 43 H 0.263 0.737 44 H 0.085 0.915 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.533 4.354 7.994 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.391 5.391 6 C 0.262 3.738 7 O -0.384 6.384 8 C -0.060 4.060 9 H 0.117 0.883 10 C -0.197 4.197 11 N -0.215 5.215 12 C -0.089 4.089 13 C -0.177 4.177 14 C 0.188 3.812 15 O -0.365 6.365 16 C -0.580 4.580 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.533 5.533 20 Si 0.785 3.215 21 H -0.222 1.222 22 H -0.262 1.262 23 H -0.193 1.193 24 C -0.088 4.088 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.211 0.789 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.198 4.367 7.550 21.086 hybrid contribution -0.067 -0.051 -0.096 0.127 sum -19.265 4.317 7.454 21.103 Atomic orbital electron populations 1.21763 0.95622 1.01745 1.01762 1.21446 0.95944 0.96051 1.02689 1.21815 0.94446 0.97963 1.02526 1.21342 0.93325 0.83672 1.02475 1.46264 1.07547 1.08361 1.76905 1.22302 0.82066 0.93468 0.75931 1.90781 1.54218 1.46442 1.46945 1.22055 0.92069 0.91088 1.00775 0.88274 1.21760 0.99623 1.01663 0.96625 1.65261 1.02070 1.49655 1.04540 1.22807 0.97456 0.95890 0.92736 1.22955 0.95400 1.00310 0.98987 1.19924 0.86711 0.84181 0.90382 1.86145 1.27296 1.45097 1.77961 1.21345 1.36875 0.92765 1.06973 0.90529 1.25166 0.93684 0.98160 0.96491 1.69995 1.34395 1.30741 1.18143 0.85689 0.79322 0.82812 0.73686 1.22161 1.26182 1.19341 1.23913 0.95955 0.97059 0.91921 0.92629 0.92785 0.92709 0.91526 0.91656 0.91492 0.91370 0.91513 0.91753 0.77036 0.92414 0.90640 0.91748 0.93286 0.92271 0.92563 0.91168 0.78898 0.92789 0.89763 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.13 -0.99 5.33 -26.73 -0.14 -1.13 16 4 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 5 N -0.74 -8.49 5.45 -60.29 -0.33 -8.82 16 6 C 0.48 7.55 6.04 -10.99 -0.07 7.48 16 7 O -0.51 -10.52 11.75 5.56 0.07 -10.45 16 8 C 0.05 0.80 2.85 -68.86 -0.20 0.60 16 9 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 10 C -0.14 -1.77 9.00 37.16 0.33 -1.44 16 11 N -0.49 -9.47 5.30 -223.89 -1.19 -10.66 16 12 C 0.04 0.74 6.00 -2.76 -0.02 0.72 16 13 C -0.14 -2.99 6.24 -25.38 -0.16 -3.15 16 14 C 0.23 5.63 0.78 -89.92 -0.07 5.56 16 15 O -0.56 -13.39 8.50 -35.23 -0.30 -13.69 16 16 C -0.54 -15.81 8.82 -34.44 -0.30 -16.11 16 17 H 0.08 2.46 7.84 -52.49 -0.41 2.05 16 18 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 19 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 20 Si 0.95 25.11 24.88 -169.99 -4.23 20.88 16 21 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 22 H -0.33 -8.86 7.11 56.52 0.40 -8.46 16 23 H -0.27 -7.03 5.31 56.52 0.30 -6.73 16 24 C 0.04 0.88 4.00 -1.90 -0.01 0.87 16 25 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.27 7.89 -40.82 -0.32 2.95 16 35 H 0.06 0.53 7.57 -51.92 -0.39 0.14 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.97 7.00 -51.93 -0.36 0.60 16 38 H 0.05 0.94 5.65 -51.92 -0.29 0.65 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 41 H 0.07 1.62 7.70 -51.93 -0.40 1.22 16 42 H 0.36 7.73 8.92 45.56 0.41 8.13 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.08 2.10 5.06 -51.93 -0.26 1.84 16 45 H 0.07 1.70 5.99 -51.93 -0.31 1.39 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -35.05 343.03 -7.65 -42.70 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.08 Total: 7.43 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.54 Total: -5.05 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.74 Total: -46.99 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.23 Total: -24.14 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.23 Total: 20.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.05 -7.65 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.434 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds