Wall clock time and date at job start Tue Mar 31 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27034 * 300.41995 * 9 7 2 11 11 C 1.54592 * 110.30890 * 62.50972 * 9 7 2 12 12 C 1.55196 * 102.80300 * 96.98090 * 11 9 7 13 13 N 1.48533 * 103.23367 * 37.43310 * 12 11 9 14 14 C 1.46904 * 110.99848 * 200.25751 * 13 12 11 15 15 C 1.53002 * 109.47169 * 287.39655 * 14 13 12 16 16 C 1.52991 * 109.47298 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47334 * 179.97438 * 16 15 14 18 18 C 1.47014 * 111.00124 * 293.63751 * 17 16 15 19 19 C 1.53093 * 109.25867 * 177.60353 * 18 17 16 20 20 O 1.43022 * 109.25914 * 56.84951 * 19 18 17 21 21 C 1.43016 * 113.73597 * 301.33093 * 20 19 18 22 22 C 1.47015 * 111.00015 * 169.99843 * 17 16 15 23 23 C 1.47899 * 105.82058 * 320.76900 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00075 * 59.30102 * 10 9 7 26 26 H 1.09002 * 110.72407 * 215.31938 * 11 9 7 27 27 H 1.09000 * 110.72935 * 338.59896 * 11 9 7 28 28 H 1.09001 * 110.68056 * 278.98632 * 12 11 9 29 29 H 1.09004 * 110.78754 * 155.92756 * 12 11 9 30 30 H 1.09000 * 109.46968 * 47.39733 * 14 13 12 31 31 H 1.09002 * 109.47219 * 167.39469 * 14 13 12 32 32 H 1.09005 * 109.47267 * 300.00374 * 15 14 13 33 33 H 1.09002 * 109.47202 * 59.99803 * 15 14 13 34 34 H 1.08998 * 109.47721 * 300.00375 * 16 15 14 35 35 H 1.09006 * 109.47177 * 60.00313 * 16 15 14 36 36 H 1.08999 * 109.50312 * 297.54187 * 18 17 16 37 37 H 1.08997 * 109.50283 * 57.67007 * 18 17 16 38 38 H 1.08998 * 109.50663 * 296.91696 * 19 18 17 39 39 H 1.08995 * 109.50975 * 176.78158 * 19 18 17 40 40 H 1.08995 * 109.50508 * 298.73408 * 21 20 19 41 41 H 1.08999 * 109.54033 * 178.62152 * 21 20 19 42 42 H 1.08996 * 109.50769 * 302.33517 * 22 17 16 43 43 H 1.09003 * 109.50505 * 62.46256 * 22 17 16 44 44 H 1.09002 * 109.91880 * 265.97874 * 23 13 12 45 45 H 1.09002 * 110.08119 * 144.77515 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4106 -2.5909 1.1468 11 6 0.4086 -2.6266 -1.2954 12 6 1.3172 -3.4841 -2.2161 13 7 1.9390 -4.4508 -1.2753 14 6 3.1656 -5.0247 -1.8447 15 6 2.7995 -6.0070 -2.9591 16 6 4.0769 -6.6043 -3.5525 17 7 3.7254 -7.5479 -4.6222 18 6 3.0186 -8.7180 -4.0812 19 6 2.6194 -9.6438 -5.2333 20 8 3.7887 -10.0108 -5.9705 21 6 4.5013 -8.8953 -6.5122 22 6 4.9196 -7.9618 -5.3731 23 6 2.2340 -3.6838 -0.0456 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2438 -1.8821 1.2137 26 1 -0.5313 -3.1402 -1.0932 27 1 0.2266 -1.6462 -1.7357 28 1 2.0785 -2.8648 -2.6904 29 1 0.7243 -4.0057 -2.9675 30 1 3.7848 -4.2261 -2.2532 31 1 3.7174 -5.5494 -1.0646 32 1 2.1802 -6.8056 -2.5506 33 1 2.2477 -5.4823 -3.7391 34 1 4.6958 -5.8055 -3.9611 35 1 4.6290 -7.1289 -2.7727 36 1 3.6738 -9.2534 -3.3942 37 1 2.1244 -8.3900 -3.5513 38 1 1.9218 -9.1259 -5.8915 39 1 2.1457 -10.5400 -4.8326 40 1 3.8584 -8.3557 -7.2075 41 1 5.3887 -9.2495 -7.0368 42 1 5.4130 -7.0820 -5.7860 43 1 5.6052 -8.4853 -4.7067 44 1 3.2592 -3.3147 -0.0750 45 1 2.0916 -4.3144 0.8320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:08 Heat of formation + Delta-G solvation = -87.576907 kcal Electronic energy + Delta-G solvation = -23097.754261 eV Core-core repulsion = 19728.977953 eV Total energy + Delta-G solvation = -3368.776308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -39.79444 -38.40475 -36.47376 -34.92805 -32.26511 -32.12674 -31.39060 -29.24741 -27.90220 -26.97360 -24.78793 -24.28641 -23.23677 -21.35364 -20.56047 -20.01861 -19.31220 -17.05524 -16.76903 -16.38546 -15.67282 -15.38247 -15.28228 -15.02147 -14.89983 -14.53722 -14.17450 -13.84370 -13.54310 -13.12460 -12.83150 -12.45132 -12.33199 -12.05555 -11.91824 -11.64174 -11.59611 -11.27307 -11.13861 -10.99713 -10.82454 -10.69158 -10.57211 -10.47299 -10.26210 -10.24907 -9.95696 -9.89295 -9.13354 -8.59851 -8.59243 -8.10184 -7.70191 -6.21400 -4.31386 3.21796 3.27087 3.29702 3.48282 3.65206 4.27986 4.53463 4.65875 4.74847 4.83417 4.89736 4.99498 5.05231 5.11697 5.28421 5.31128 5.38872 5.43170 5.50051 5.53267 5.62209 5.70108 5.77943 5.83971 5.92821 6.04230 6.09496 6.25944 6.30841 6.41675 6.47719 6.73436 6.75574 6.79472 6.88303 7.01417 7.10057 7.39452 7.51998 7.58840 7.75403 7.82478 8.21737 8.71573 9.37519 9.56521 10.84157 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.002977 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.654036 B = 9404.726636 C = 9756.502324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.246 3.754 10 O -0.590 6.590 11 C -0.128 4.128 12 C 0.041 3.959 13 N -0.518 5.518 14 C 0.049 3.951 15 C -0.107 4.107 16 C 0.057 3.943 17 N -0.537 5.537 18 C 0.014 3.986 19 C 0.063 3.937 20 O -0.389 6.389 21 C 0.064 3.936 22 C 0.017 3.983 23 C 0.053 3.947 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.610 -14.311 -10.689 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.206 3.794 10 O -0.399 6.399 11 C -0.167 4.167 12 C -0.087 4.087 13 N -0.242 5.242 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.071 4.071 17 N -0.262 5.262 18 C -0.114 4.114 19 C -0.014 4.014 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.111 4.111 23 C -0.074 4.074 24 H 0.078 0.922 25 H 0.231 0.769 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.221 -15.110 -10.812 19.594 hybrid contribution 1.261 2.079 0.309 2.451 sum 7.482 -13.031 -10.503 18.333 Atomic orbital electron populations 1.69656 1.05883 1.27552 1.50310 1.25013 0.95004 0.99391 0.93868 0.86549 0.79620 0.82479 0.78730 1.20215 1.21061 1.20085 1.21727 0.93305 0.90917 1.51438 0.92424 1.19350 0.86647 0.90816 0.82615 1.86109 1.51968 1.54488 1.47322 1.23065 0.96877 0.98873 0.97850 1.23192 0.97491 0.92839 0.95180 1.64720 1.22931 1.31511 1.05064 1.22163 0.92428 0.97010 0.96477 1.21503 0.96504 0.98891 0.97647 1.22135 0.97889 0.95047 0.92009 1.62201 1.23691 1.14215 1.26100 1.22855 1.00110 0.91387 0.97051 1.22689 0.87460 0.98594 0.92627 1.87970 1.40123 1.31712 1.70925 1.22654 0.96682 0.87403 0.94577 1.22782 0.92169 0.99526 0.96671 1.22762 0.98007 0.94869 0.91807 0.92198 0.76864 0.93331 0.89960 0.94300 0.91951 0.94907 0.91743 0.91351 0.91105 0.90700 0.94738 0.94032 0.88859 0.92156 0.88463 0.92221 0.88597 0.89623 0.94079 0.93984 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 10.38 55.43 0.58 -23.30 16 2 C 0.07 1.83 5.01 -17.82 -0.09 1.74 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.42 8.23 -34.44 -0.28 -14.70 16 8 H 0.06 1.55 7.34 -52.49 -0.39 1.16 16 9 C 0.25 6.22 0.99 -90.42 -0.09 6.13 16 10 O -0.59 -15.83 12.93 -35.23 -0.46 -16.28 16 11 C -0.13 -3.02 5.89 -24.73 -0.15 -3.17 16 12 C 0.04 0.82 5.92 -1.76 -0.01 0.80 16 13 N -0.52 -10.10 5.24 -230.28 -1.21 -11.31 16 14 C 0.05 0.77 4.71 -3.82 -0.02 0.75 16 15 C -0.11 -1.42 5.24 -26.73 -0.14 -1.56 16 16 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 17 N -0.54 -5.80 4.73 -234.31 -1.11 -6.91 16 18 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 19 C 0.06 0.58 7.01 37.21 0.26 0.85 16 20 O -0.39 -4.15 10.83 -35.23 -0.38 -4.53 16 21 C 0.06 0.55 7.01 37.21 0.26 0.82 16 22 C 0.02 0.16 5.65 -3.71 -0.02 0.13 16 23 C 0.05 1.18 6.13 -2.76 -0.02 1.17 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.38 10.28 7.20 45.56 0.33 10.61 16 26 H 0.05 1.15 8.08 -51.93 -0.42 0.73 16 27 H 0.08 2.10 6.63 -51.93 -0.34 1.75 16 28 H 0.04 0.79 7.81 -51.93 -0.41 0.39 16 29 H 0.06 1.13 7.80 -51.93 -0.40 0.73 16 30 H 0.03 0.53 7.83 -51.93 -0.41 0.12 16 31 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 32 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 33 H 0.07 1.00 7.37 -51.93 -0.38 0.62 16 34 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 35 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.94 6.38 -51.93 -0.33 0.61 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.04 0.93 7.02 -51.93 -0.36 0.56 16 45 H 0.07 1.53 7.96 -51.93 -0.41 1.12 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -28.37 344.56 -9.96 -38.33 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.22 Total: 9.50 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.33 Total: -6.29 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -1.74 Total: -41.52 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.84 Total: -20.81 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.37 -9.96 -38.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.247 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds