Wall clock time and date at job start Tue Mar 31 2020 03:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42898 * 110.27034 * 300.41995 * 9 7 2 11 11 C 1.54592 * 110.30890 * 62.50972 * 9 7 2 12 12 C 1.55196 * 102.80300 * 96.98090 * 11 9 7 13 13 N 1.48533 * 103.23367 * 37.43310 * 12 11 9 14 14 C 1.46904 * 110.99848 * 200.25751 * 13 12 11 15 15 C 1.53002 * 109.47169 * 287.39655 * 14 13 12 16 16 C 1.52991 * 109.47298 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47334 * 179.97438 * 16 15 14 18 18 C 1.47014 * 111.00124 * 293.63751 * 17 16 15 19 19 C 1.53093 * 109.25867 * 177.60353 * 18 17 16 20 20 O 1.43022 * 109.25914 * 56.84951 * 19 18 17 21 21 C 1.43016 * 113.73597 * 301.33093 * 20 19 18 22 22 C 1.47015 * 111.00015 * 169.99843 * 17 16 15 23 23 C 1.47899 * 105.82058 * 320.76900 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 114.00075 * 59.30102 * 10 9 7 26 26 H 1.09002 * 110.72407 * 215.31938 * 11 9 7 27 27 H 1.09000 * 110.72935 * 338.59896 * 11 9 7 28 28 H 1.09001 * 110.68056 * 278.98632 * 12 11 9 29 29 H 1.09004 * 110.78754 * 155.92756 * 12 11 9 30 30 H 1.09000 * 109.46968 * 47.39733 * 14 13 12 31 31 H 1.09002 * 109.47219 * 167.39469 * 14 13 12 32 32 H 1.09005 * 109.47267 * 300.00374 * 15 14 13 33 33 H 1.09002 * 109.47202 * 59.99803 * 15 14 13 34 34 H 1.08998 * 109.47721 * 300.00375 * 16 15 14 35 35 H 1.09006 * 109.47177 * 60.00313 * 16 15 14 36 36 H 1.08999 * 109.50312 * 297.54187 * 18 17 16 37 37 H 1.08997 * 109.50283 * 57.67007 * 18 17 16 38 38 H 1.08998 * 109.50663 * 296.91696 * 19 18 17 39 39 H 1.08995 * 109.50975 * 176.78158 * 19 18 17 40 40 H 1.08995 * 109.50508 * 298.73408 * 21 20 19 41 41 H 1.08999 * 109.54033 * 178.62152 * 21 20 19 42 42 H 1.08996 * 109.50769 * 302.33517 * 22 17 16 43 43 H 1.09003 * 109.50505 * 62.46256 * 22 17 16 44 44 H 1.09002 * 109.91880 * 265.97874 * 23 13 12 45 45 H 1.09002 * 110.08119 * 144.77515 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4106 -2.5909 1.1468 11 6 0.4086 -2.6266 -1.2954 12 6 1.3172 -3.4841 -2.2161 13 7 1.9390 -4.4508 -1.2753 14 6 3.1656 -5.0247 -1.8447 15 6 2.7995 -6.0070 -2.9591 16 6 4.0769 -6.6043 -3.5525 17 7 3.7254 -7.5479 -4.6222 18 6 3.0186 -8.7180 -4.0812 19 6 2.6194 -9.6438 -5.2333 20 8 3.7887 -10.0108 -5.9705 21 6 4.5013 -8.8953 -6.5122 22 6 4.9196 -7.9618 -5.3731 23 6 2.2340 -3.6838 -0.0456 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2438 -1.8821 1.2137 26 1 -0.5313 -3.1402 -1.0932 27 1 0.2266 -1.6462 -1.7357 28 1 2.0785 -2.8648 -2.6904 29 1 0.7243 -4.0057 -2.9675 30 1 3.7848 -4.2261 -2.2532 31 1 3.7174 -5.5494 -1.0646 32 1 2.1802 -6.8056 -2.5506 33 1 2.2477 -5.4823 -3.7391 34 1 4.6958 -5.8055 -3.9611 35 1 4.6290 -7.1289 -2.7727 36 1 3.6738 -9.2534 -3.3942 37 1 2.1244 -8.3900 -3.5513 38 1 1.9218 -9.1259 -5.8915 39 1 2.1457 -10.5400 -4.8326 40 1 3.8584 -8.3557 -7.2075 41 1 5.3887 -9.2495 -7.0368 42 1 5.4130 -7.0820 -5.7860 43 1 5.6052 -8.4853 -4.7067 44 1 3.2592 -3.3147 -0.0750 45 1 2.0916 -4.3144 0.8320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:05 Heat of formation + Delta-G solvation = -109.696365 kcal Electronic energy + Delta-G solvation = -23098.713432 eV Core-core repulsion = 19728.977953 eV Total energy + Delta-G solvation = -3369.735480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58999 -40.07210 -37.54297 -36.52324 -34.19822 -33.54815 -32.12534 -30.70717 -29.67726 -28.16047 -26.49200 -25.03175 -24.54122 -22.60170 -21.51256 -21.37144 -21.14030 -19.05173 -17.63430 -17.19339 -17.13316 -16.86370 -16.45265 -16.02845 -15.97377 -15.88681 -15.39988 -15.26928 -14.80406 -14.72072 -14.29665 -14.11828 -13.58126 -13.27428 -13.20481 -12.97309 -12.83705 -12.78768 -12.49124 -12.37616 -12.32421 -12.17467 -12.07893 -11.95490 -11.82873 -11.59457 -11.33750 -11.07772 -10.66180 -10.61020 -10.11995 -9.40674 -9.30752 -8.22703 -6.40647 1.39700 1.41010 1.48623 2.36208 2.66709 2.95242 3.00796 3.20127 3.87399 3.93045 3.95722 4.01963 4.07965 4.11267 4.20982 4.27282 4.32388 4.42453 4.47272 4.50539 4.53317 4.60285 4.70116 4.71697 4.74978 4.76746 4.83159 4.92294 4.95839 5.02717 5.12154 5.20014 5.25858 5.33771 5.42220 5.57243 5.77270 5.83671 5.94671 5.98044 6.17975 6.23832 6.25883 6.66131 7.31072 7.45770 8.81395 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.002977 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.654036 B = 9404.726636 C = 9756.502324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.029 3.971 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.052 0.948 9 C 0.228 3.772 10 O -0.601 6.601 11 C -0.123 4.123 12 C 0.052 3.948 13 N -0.518 5.518 14 C 0.049 3.951 15 C -0.094 4.094 16 C 0.064 3.936 17 N -0.547 5.547 18 C 0.015 3.985 19 C 0.063 3.937 20 O -0.406 6.406 21 C 0.062 3.938 22 C 0.017 3.983 23 C 0.060 3.940 24 H 0.270 0.730 25 H 0.376 0.624 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -14.803 -11.823 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.070 0.930 9 C 0.188 3.812 10 O -0.409 6.409 11 C -0.162 4.162 12 C -0.075 4.075 13 N -0.243 5.243 14 C -0.080 4.080 15 C -0.133 4.133 16 C -0.064 4.064 17 N -0.272 5.272 18 C -0.113 4.113 19 C -0.014 4.014 20 O -0.325 6.325 21 C -0.015 4.015 22 C -0.111 4.111 23 C -0.068 4.068 24 H 0.080 0.920 25 H 0.225 0.775 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.285 -15.621 -11.958 20.978 hybrid contribution 0.917 2.213 0.669 2.487 sum 8.201 -13.408 -11.288 19.351 Atomic orbital electron populations 1.69742 1.06828 1.28317 1.50035 1.25704 0.95838 1.02269 0.93332 0.85600 0.78483 0.78786 0.78676 1.19656 1.20428 1.20062 1.21940 0.93210 0.92165 1.52495 0.93025 1.19661 0.87199 0.91703 0.82649 1.86102 1.52082 1.54267 1.48476 1.22889 0.97069 0.98280 0.97915 1.23086 0.96970 0.92611 0.94861 1.64723 1.24949 1.30409 1.04172 1.22258 0.90892 0.97361 0.97472 1.21352 0.97429 0.98058 0.96412 1.22008 0.96715 0.95352 0.92305 1.62195 1.24564 1.14532 1.25951 1.22862 0.99874 0.91293 0.97314 1.22767 0.87180 0.99143 0.92275 1.87949 1.40616 1.32804 1.71135 1.22797 0.97330 0.86986 0.94374 1.22839 0.91548 1.00110 0.96598 1.22609 0.97065 0.93990 0.93138 0.92012 0.77482 0.94115 0.92276 0.94552 0.89585 0.94939 0.90781 0.91440 0.91855 0.90195 0.94451 0.94451 0.89006 0.92171 0.86947 0.92164 0.86638 0.88480 0.94346 0.94059 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.89 10.38 21.45 0.22 -48.67 16 2 C 0.03 1.54 5.01 84.66 0.42 1.97 16 3 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.56 -30.35 8.23 25.60 0.21 -30.14 16 8 H 0.05 2.78 7.34 -2.91 -0.02 2.76 16 9 C 0.23 11.62 0.99 -10.66 -0.01 11.61 16 10 O -0.60 -32.81 12.93 -148.98 -1.93 -34.74 16 11 C -0.12 -5.84 5.89 31.89 0.19 -5.65 16 12 C 0.05 2.05 5.92 86.74 0.51 2.56 16 13 N -0.52 -19.61 5.24 -882.46 -4.63 -24.24 16 14 C 0.05 1.45 4.71 86.30 0.41 1.86 16 15 C -0.09 -2.30 5.24 30.59 0.16 -2.14 16 16 C 0.06 1.31 4.96 86.30 0.43 1.74 16 17 N -0.55 -10.77 4.73 -895.22 -4.23 -15.00 16 18 C 0.01 0.27 5.44 86.31 0.47 0.74 16 19 C 0.06 1.06 7.01 72.01 0.50 1.57 16 20 O -0.41 -7.98 10.83 -148.98 -1.61 -9.59 16 21 C 0.06 0.95 7.01 72.02 0.50 1.45 16 22 C 0.02 0.28 5.65 86.31 0.49 0.77 16 23 C 0.06 2.66 6.13 86.44 0.53 3.19 16 24 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 25 H 0.38 20.80 7.20 -74.05 -0.53 20.26 16 26 H 0.04 1.95 8.08 -2.39 -0.02 1.93 16 27 H 0.06 3.05 6.63 -2.39 -0.02 3.04 16 28 H 0.04 1.44 7.81 -2.39 -0.02 1.42 16 29 H 0.09 2.97 7.80 -2.38 -0.02 2.95 16 30 H 0.03 0.98 7.83 -2.39 -0.02 0.97 16 31 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 32 H 0.07 1.68 6.52 -2.38 -0.02 1.66 16 33 H 0.06 1.66 7.37 -2.39 -0.02 1.64 16 34 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 35 H 0.04 0.75 8.12 -2.38 -0.02 0.73 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.70 6.38 -2.39 -0.02 1.69 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 43 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.04 1.81 7.02 -2.39 -0.02 1.79 16 45 H 0.06 2.81 7.96 -2.39 -0.02 2.79 16 Total: -1.00 -59.51 344.56 -4.91 -64.42 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.43 Total: 34.21 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.82 Total: -10.46 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -8.64 Total: -87.91 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -3.54 Total: -44.33 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -59.51 -4.91 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.275 kcal (2) G-P(sol) polarization free energy of solvation -59.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds