Wall clock time and date at job start Tue Mar 31 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99636 * 2 1 4 4 O 1.20826 * 120.00186 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99643 * 179.97438 * 3 2 1 6 6 N 1.46511 * 109.46928 * 179.97438 * 5 3 2 7 7 C 1.34771 * 119.99702 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00581 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00016 * 180.02562 * 7 6 5 10 10 N 1.46895 * 109.47542 * 180.02562 * 9 7 6 11 11 C 1.46850 * 111.00333 * 66.04416 * 10 9 7 12 12 C 1.53036 * 109.52384 * 174.16360 * 11 10 9 13 13 C 1.53120 * 109.27700 * 59.18090 * 12 11 10 14 14 C 1.53120 * 109.15972 * 302.34018 * 13 12 11 15 15 H 1.08997 * 109.50809 * 297.71813 * 14 13 12 16 16 C 1.50703 * 109.50080 * 177.59961 * 14 13 12 17 17 H 1.08006 * 119.99534 * 240.00438 * 16 14 13 18 18 C 1.37877 * 120.00107 * 60.00519 * 16 14 13 19 19 N 1.31516 * 119.99901 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99711 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47131 * 89.99759 * 20 18 16 22 22 H 1.48504 * 109.46500 * 209.99809 * 20 18 16 23 23 H 1.48494 * 109.47320 * 329.99171 * 20 18 16 24 24 C 1.46850 * 110.99945 * 301.83348 * 10 9 7 25 25 H 1.09005 * 109.46538 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47431 * 300.00146 * 1 2 3 27 27 H 1.08998 * 109.46887 * 60.00425 * 1 2 3 28 28 H 1.08999 * 109.47583 * 59.99865 * 5 3 2 29 29 H 1.08998 * 109.47107 * 299.99602 * 5 3 2 30 30 H 0.96995 * 119.99624 * 359.97438 * 6 5 3 31 31 H 1.09000 * 109.47215 * 59.99207 * 9 7 6 32 32 H 1.09007 * 109.47214 * 299.99929 * 9 7 6 33 33 H 1.08995 * 109.45831 * 54.14149 * 11 10 9 34 34 H 1.08998 * 109.45719 * 294.17998 * 11 10 9 35 35 H 1.08998 * 109.49982 * 179.12006 * 12 11 10 36 36 H 1.08992 * 109.50379 * 299.23548 * 12 11 10 37 37 H 1.08996 * 109.52458 * 62.25353 * 13 12 11 38 38 H 1.08999 * 109.51695 * 182.37635 * 13 12 11 39 39 H 0.96993 * 120.00001 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.46080 * 65.82377 * 24 10 9 41 41 H 1.09001 * 109.45527 * 305.85274 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2920 2.9951 -0.0003 8 8 6.1274 2.1158 -0.0003 9 6 5.7193 4.4402 -0.0005 10 7 7.1862 4.5172 -0.0013 11 6 7.7403 3.9889 -1.2544 12 6 9.2533 4.2175 -1.2812 13 6 9.8923 3.5125 -0.0815 14 6 9.2635 4.0462 1.2086 15 1 9.4712 5.1122 1.3008 16 6 9.8448 3.3154 2.3914 17 1 9.1992 2.7504 3.0476 18 6 11.2007 3.3679 2.6358 19 7 11.9868 4.0555 1.8365 20 14 11.9213 2.4614 4.1016 21 1 12.2996 1.0843 3.6947 22 1 13.1254 3.1828 4.5865 23 1 10.9118 2.3968 5.1887 24 6 7.7503 3.8226 1.1631 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7806 -0.8891 29 1 3.9556 0.7810 0.8908 30 1 3.3136 3.3830 -0.0013 31 1 5.3296 4.9345 0.8894 32 1 5.3295 4.9343 -0.8905 33 1 7.2805 4.5015 -2.0993 34 1 7.5331 2.9209 -1.3213 35 1 9.6664 3.8113 -2.2044 36 1 9.4608 5.2862 -1.2282 37 1 9.7182 2.4390 -0.1547 38 1 10.9646 3.7078 -0.0731 39 1 12.9407 4.0922 2.0082 40 1 7.5430 2.7553 1.0848 41 1 7.2977 4.2145 2.0740 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595612499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:36 Heat of formation + Delta-G solvation = -112.702448 kcal Electronic energy + Delta-G solvation = -22841.095375 eV Core-core repulsion = 19335.396447 eV Total energy + Delta-G solvation = -3505.698928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03160 -39.99080 -37.54902 -36.91925 -34.61353 -33.57049 -31.73732 -29.84341 -29.67437 -27.73348 -25.97269 -24.83589 -22.33542 -21.47968 -21.23706 -20.54660 -18.77899 -18.00237 -17.53547 -17.11178 -16.45458 -16.15577 -15.64469 -15.44261 -14.75897 -14.38995 -14.24785 -13.97299 -13.92483 -13.45703 -13.09790 -12.94680 -12.48769 -12.29227 -12.08268 -11.98331 -11.62067 -11.28434 -11.27281 -11.03024 -10.85855 -10.57441 -10.52080 -10.25528 -9.94631 -9.72641 -9.38370 -9.17479 -8.93285 -8.59197 -8.20343 -7.46801 -5.87665 -3.92720 1.68696 2.04792 2.66677 3.19874 3.37432 3.43489 3.47014 4.24886 4.43775 4.59696 4.66999 4.74550 4.91507 4.96286 5.09010 5.16976 5.36325 5.42265 5.59839 5.79553 5.82976 6.03316 6.10419 6.24334 6.45680 6.63649 6.69693 6.87321 6.96907 7.14902 7.20358 7.30315 7.35579 7.50718 7.71218 7.82961 7.88225 8.20789 8.24376 8.31472 8.60861 9.11185 9.70630 11.18476 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.003542 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.306747 B = 7903.575283 C = 8701.970727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.461 3.539 4 O -0.506 6.506 5 C 0.125 3.875 6 N -0.732 5.732 7 C 0.482 3.518 8 O -0.516 6.516 9 C 0.039 3.961 10 N -0.512 5.512 11 C 0.050 3.950 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.057 3.943 15 H 0.029 0.971 16 C -0.509 4.509 17 H 0.052 0.948 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.046 3.954 25 H 0.104 0.896 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.409 0.591 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.032 0.968 38 H 0.088 0.912 39 H 0.258 0.742 40 H 0.062 0.938 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.833 -4.398 -6.349 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.304 3.696 4 O -0.393 6.393 5 C 0.000 4.000 6 N -0.392 5.392 7 C 0.268 3.732 8 O -0.391 6.391 9 C -0.094 4.094 10 N -0.234 5.234 11 C -0.078 4.078 12 C -0.153 4.153 13 C -0.147 4.147 14 C 0.038 3.962 15 H 0.047 0.953 16 C -0.548 4.548 17 H 0.071 0.929 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.080 4.080 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.246 0.754 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.096 -4.195 -6.332 21.483 hybrid contribution -0.498 -1.038 0.745 1.372 sum -20.594 -5.233 -5.587 21.971 Atomic orbital electron populations 1.23334 0.75614 1.04050 1.02777 1.86500 1.23944 1.32694 1.83841 1.23698 0.92055 0.81717 0.72175 1.90670 1.66895 1.36294 1.45459 1.20615 0.86307 0.86692 1.06385 1.46210 1.08869 1.06448 1.77648 1.22844 0.80972 0.94160 0.75247 1.90718 1.50250 1.50542 1.47571 1.22414 0.92418 0.90114 1.04445 1.62506 1.00410 1.55802 1.04725 1.22205 0.96666 0.98643 0.90248 1.21642 0.93308 1.01105 0.99227 1.21624 1.02736 0.97044 0.93316 1.18626 0.87391 0.97005 0.93141 0.95250 1.21156 0.92492 1.30748 1.10367 0.92946 1.24931 0.97197 0.95443 0.96373 1.69898 1.04285 1.41377 1.37369 0.86640 0.78617 0.79806 0.83177 1.20821 1.21335 1.20035 1.22671 0.98687 0.97671 0.89015 0.87750 0.91624 0.91673 0.87144 0.87008 0.75391 0.87894 0.88348 0.93080 0.93182 0.93642 0.92411 0.94958 0.89325 0.93188 0.91962 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.07 10.57 -39.24 -0.41 -3.49 16 3 C 0.46 4.49 8.03 36.01 0.29 4.78 16 4 O -0.51 -5.87 15.42 -18.75 -0.29 -6.16 16 5 C 0.13 1.24 6.27 -5.19 -0.03 1.21 16 6 N -0.73 -8.16 5.53 -61.47 -0.34 -8.50 16 7 C 0.48 7.00 7.25 -10.99 -0.08 6.92 16 8 O -0.52 -9.64 11.62 5.55 0.06 -9.57 16 9 C 0.04 0.54 5.86 -4.98 -0.03 0.51 16 10 N -0.51 -9.61 4.86 -236.11 -1.15 -10.76 16 11 C 0.05 0.93 5.10 -3.83 -0.02 0.91 16 12 C -0.11 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C -0.11 -2.73 5.02 -26.61 -0.13 -2.86 16 14 C 0.06 1.49 2.26 -91.69 -0.21 1.29 16 15 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.51 -14.52 8.56 -34.44 -0.29 -14.81 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -26.12 11.35 55.43 0.63 -25.49 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.05 1.03 4.20 -3.83 -0.02 1.01 16 25 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 28 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.41 3.95 7.44 -40.82 -0.30 3.65 16 31 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.10 8.06 -51.93 -0.42 0.68 16 33 H 0.05 0.81 8.06 -51.93 -0.42 0.40 16 34 H 0.05 1.00 6.00 -51.93 -0.31 0.69 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.06 1.49 5.36 -51.92 -0.28 1.21 16 41 H 0.05 1.11 8.12 -51.93 -0.42 0.68 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -33.26 331.35 -7.48 -40.74 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.24 Total: 2.00 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 0.29 Total: -0.65 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.86 Total: -44.75 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.64 Total: -19.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.26 -7.48 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.960 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds