Wall clock time and date at job start Tue Mar 31 2020 02:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99636 * 2 1 4 4 O 1.20826 * 120.00186 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99643 * 179.97438 * 3 2 1 6 6 N 1.46511 * 109.46928 * 179.97438 * 5 3 2 7 7 C 1.34771 * 119.99702 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00581 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00016 * 180.02562 * 7 6 5 10 10 N 1.46895 * 109.47542 * 180.02562 * 9 7 6 11 11 C 1.46850 * 111.00333 * 66.04416 * 10 9 7 12 12 C 1.53036 * 109.52384 * 174.16360 * 11 10 9 13 13 C 1.53120 * 109.27700 * 59.18090 * 12 11 10 14 14 C 1.53120 * 109.15972 * 302.34018 * 13 12 11 15 15 H 1.08997 * 109.50809 * 297.71813 * 14 13 12 16 16 C 1.50703 * 109.50080 * 177.59961 * 14 13 12 17 17 H 1.08006 * 119.99534 * 240.00438 * 16 14 13 18 18 C 1.37877 * 120.00107 * 60.00519 * 16 14 13 19 19 N 1.31516 * 119.99901 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99711 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47131 * 89.99759 * 20 18 16 22 22 H 1.48504 * 109.46500 * 209.99809 * 20 18 16 23 23 H 1.48494 * 109.47320 * 329.99171 * 20 18 16 24 24 C 1.46850 * 110.99945 * 301.83348 * 10 9 7 25 25 H 1.09005 * 109.46538 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47431 * 300.00146 * 1 2 3 27 27 H 1.08998 * 109.46887 * 60.00425 * 1 2 3 28 28 H 1.08999 * 109.47583 * 59.99865 * 5 3 2 29 29 H 1.08998 * 109.47107 * 299.99602 * 5 3 2 30 30 H 0.96995 * 119.99624 * 359.97438 * 6 5 3 31 31 H 1.09000 * 109.47215 * 59.99207 * 9 7 6 32 32 H 1.09007 * 109.47214 * 299.99929 * 9 7 6 33 33 H 1.08995 * 109.45831 * 54.14149 * 11 10 9 34 34 H 1.08998 * 109.45719 * 294.17998 * 11 10 9 35 35 H 1.08998 * 109.49982 * 179.12006 * 12 11 10 36 36 H 1.08992 * 109.50379 * 299.23548 * 12 11 10 37 37 H 1.08996 * 109.52458 * 62.25353 * 13 12 11 38 38 H 1.08999 * 109.51695 * 182.37635 * 13 12 11 39 39 H 0.96993 * 120.00001 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.46080 * 65.82377 * 24 10 9 41 41 H 1.09001 * 109.45527 * 305.85274 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 5.2920 2.9951 -0.0003 8 8 6.1274 2.1158 -0.0003 9 6 5.7193 4.4402 -0.0005 10 7 7.1862 4.5172 -0.0013 11 6 7.7403 3.9889 -1.2544 12 6 9.2533 4.2175 -1.2812 13 6 9.8923 3.5125 -0.0815 14 6 9.2635 4.0462 1.2086 15 1 9.4712 5.1122 1.3008 16 6 9.8448 3.3154 2.3914 17 1 9.1992 2.7504 3.0476 18 6 11.2007 3.3679 2.6358 19 7 11.9868 4.0555 1.8365 20 14 11.9213 2.4614 4.1016 21 1 12.2996 1.0843 3.6947 22 1 13.1254 3.1828 4.5865 23 1 10.9118 2.3968 5.1887 24 6 7.7503 3.8226 1.1631 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7806 -0.8891 29 1 3.9556 0.7810 0.8908 30 1 3.3136 3.3830 -0.0013 31 1 5.3296 4.9345 0.8894 32 1 5.3295 4.9343 -0.8905 33 1 7.2805 4.5015 -2.0993 34 1 7.5331 2.9209 -1.3213 35 1 9.6664 3.8113 -2.2044 36 1 9.4608 5.2862 -1.2282 37 1 9.7182 2.4390 -0.1547 38 1 10.9646 3.7078 -0.0731 39 1 12.9407 4.0922 2.0082 40 1 7.5430 2.7553 1.0848 41 1 7.2977 4.2145 2.0740 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595612499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:35 Heat of formation + Delta-G solvation = -137.325989 kcal Electronic energy + Delta-G solvation = -22842.163132 eV Core-core repulsion = 19335.396447 eV Total energy + Delta-G solvation = -3506.766684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85923 -41.16350 -38.98285 -37.77157 -35.73682 -35.36410 -33.51162 -31.62677 -30.69070 -28.58374 -27.05963 -26.87580 -23.85737 -23.12166 -22.24649 -21.64180 -20.47387 -18.98499 -18.49846 -18.28007 -17.84126 -17.37699 -16.83705 -16.62172 -16.38567 -15.77210 -15.71450 -15.21152 -14.93303 -14.84293 -14.26496 -14.22309 -13.96838 -13.62429 -13.58140 -13.20013 -13.00292 -12.89492 -12.78272 -12.49734 -12.25172 -11.90117 -11.82157 -11.74567 -11.65538 -11.44389 -11.34740 -10.84399 -10.63482 -10.37249 -10.23583 -8.97044 -8.05819 -6.19365 0.92635 1.31719 1.40734 1.41516 1.51989 1.55612 2.30472 2.44140 3.11180 3.20491 3.54767 3.91150 4.14469 4.20903 4.25475 4.26796 4.31991 4.32473 4.41676 4.57371 4.61746 4.69503 4.81386 4.82942 4.97883 5.07964 5.13252 5.19243 5.22181 5.38325 5.45593 5.55157 5.66084 5.97864 6.13620 6.20508 6.22825 6.43959 6.49454 6.50765 6.92781 7.18308 7.47644 8.98988 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.003542 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.306747 B = 7903.575283 C = 8701.970727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.525 6.525 5 C 0.124 3.876 6 N -0.716 5.716 7 C 0.485 3.515 8 O -0.562 6.562 9 C 0.036 3.964 10 N -0.521 5.521 11 C 0.056 3.944 12 C -0.110 4.110 13 C -0.102 4.102 14 C 0.054 3.946 15 H -0.004 1.004 16 C -0.534 4.534 17 H 0.046 0.954 18 C 0.012 3.988 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.269 1.269 24 C 0.064 3.936 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.419 0.581 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.013 0.987 38 H 0.056 0.944 39 H 0.260 0.740 40 H 0.047 0.953 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.817 -4.606 -6.780 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.415 6.415 5 C -0.001 4.001 6 N -0.375 5.375 7 C 0.272 3.728 8 O -0.440 6.440 9 C -0.095 4.095 10 N -0.243 5.243 11 C -0.071 4.071 12 C -0.147 4.147 13 C -0.140 4.140 14 C 0.036 3.964 15 H 0.014 0.986 16 C -0.573 4.573 17 H 0.064 0.936 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.063 4.063 25 H 0.150 0.850 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.258 0.742 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.145 -4.400 -6.770 23.571 hybrid contribution 0.015 -0.995 0.859 1.315 sum -22.129 -5.395 -5.911 23.532 Atomic orbital electron populations 1.23633 0.73887 1.06000 1.02914 1.86490 1.25614 1.31923 1.83380 1.23517 0.91749 0.81780 0.71599 1.90663 1.67270 1.36939 1.46615 1.20670 0.86758 0.85833 1.06855 1.45958 1.08027 1.07482 1.76012 1.22749 0.81467 0.93922 0.74702 1.90715 1.51647 1.51633 1.50048 1.22593 0.89224 0.90332 1.07347 1.62367 1.03482 1.55092 1.03360 1.22154 0.95077 0.98461 0.91423 1.21564 0.95103 1.00208 0.97861 1.21421 1.01107 0.96249 0.95206 1.18560 0.90393 0.94459 0.93023 0.98604 1.21513 0.93098 1.31230 1.11417 0.93580 1.25729 0.97551 0.96206 0.99126 1.70036 1.04489 1.42259 1.38768 0.85619 0.77957 0.78577 0.79877 1.20322 1.20566 1.19309 1.22243 0.96131 0.97134 0.90806 0.84991 0.91620 0.91431 0.86357 0.86977 0.74212 0.85957 0.84496 0.89181 0.94480 0.91608 0.92766 0.96810 0.92516 0.93077 0.93487 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.58 10.57 -51.35 -0.54 -6.12 16 3 C 0.47 8.36 8.03 71.24 0.57 8.94 16 4 O -0.53 -11.25 15.42 21.96 0.34 -10.91 16 5 C 0.12 2.27 6.27 85.63 0.54 2.80 16 6 N -0.72 -14.45 5.53 -466.77 -2.58 -17.03 16 7 C 0.48 13.20 7.25 87.66 0.64 13.84 16 8 O -0.56 -20.69 11.62 -3.04 -0.04 -20.72 16 9 C 0.04 0.91 5.86 85.56 0.50 1.42 16 10 N -0.52 -18.82 4.86 -900.92 -4.38 -23.20 16 11 C 0.06 2.00 5.10 86.32 0.44 2.44 16 12 C -0.11 -4.48 6.09 30.65 0.19 -4.29 16 13 C -0.10 -5.25 5.02 30.67 0.15 -5.10 16 14 C 0.05 2.95 2.26 -11.49 -0.03 2.92 16 15 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 16 C -0.53 -31.43 8.56 25.60 0.22 -31.21 16 17 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 18 C 0.01 0.71 5.30 84.65 0.45 1.16 16 19 N -0.92 -55.25 11.35 21.45 0.24 -55.01 16 20 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.06 2.90 4.20 86.32 0.36 3.26 16 25 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 27 H 0.07 0.63 8.13 -2.39 -0.02 0.61 16 28 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.42 6.97 7.44 -92.71 -0.69 6.28 16 31 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.14 2.43 8.06 -2.38 -0.02 2.41 16 33 H 0.09 2.53 8.06 -2.39 -0.02 2.51 16 34 H 0.04 1.44 6.00 -2.39 -0.01 1.43 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 3.26 6.15 -2.39 -0.01 3.25 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.05 2.30 5.36 -2.38 -0.01 2.29 16 41 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 Total: -1.00 -74.15 331.35 0.64 -73.50 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.34 Total: 14.21 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.23 Total: -2.35 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -6.71 Total: -95.23 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.24 Total: -37.76 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.15 0.64 -73.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595612499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.821 kcal (2) G-P(sol) polarization free energy of solvation -74.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds