Wall clock time and date at job start Tue Mar 31 2020 03:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99829 * 2 1 4 4 H 1.48496 * 109.47095 * 239.99499 * 3 2 1 5 5 H 1.48498 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47183 * 119.99618 * 3 2 1 7 7 C 1.37869 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47139 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47396 * 54.99706 * 12 11 10 14 14 N 1.46905 * 109.47084 * 294.99736 * 12 11 10 15 15 C 1.50700 * 109.47064 * 174.99796 * 12 11 10 16 16 O 1.21282 * 119.99872 * 100.00207 * 15 12 11 17 17 N 1.34777 * 119.99986 * 280.00094 * 15 12 11 18 18 C 1.46501 * 119.99862 * 180.02562 * 17 15 12 19 19 H 1.08995 * 109.46992 * 34.99731 * 18 17 15 20 20 C 1.53004 * 109.46931 * 274.99943 * 18 17 15 21 21 O 1.42901 * 109.46915 * 294.99778 * 20 18 17 22 22 C 1.52997 * 109.47053 * 154.99904 * 18 17 15 23 23 C 1.53785 * 113.61368 * 279.13429 * 22 18 17 24 24 C 1.53956 * 87.01658 * 220.04804 * 23 22 18 25 25 C 1.53773 * 87.11227 * 25.36233 * 24 23 22 26 26 H 0.97001 * 120.00076 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46419 * 60.00185 * 9 7 2 28 28 H 1.08993 * 109.47343 * 300.00285 * 9 7 2 29 29 H 1.08994 * 109.47156 * 60.00186 * 10 9 7 30 30 H 1.09004 * 109.47219 * 299.99811 * 10 9 7 31 31 H 1.08995 * 109.46766 * 59.99907 * 11 10 9 32 32 H 1.09001 * 109.46844 * 300.00237 * 11 10 9 33 33 H 1.00901 * 110.99869 * 300.00384 * 14 12 11 34 34 H 1.00896 * 110.99543 * 63.95506 * 14 12 11 35 35 H 0.96998 * 119.99710 * 359.97438 * 17 15 12 36 36 H 1.08998 * 109.47266 * 54.99795 * 20 18 17 37 37 H 1.08996 * 109.46905 * 175.00337 * 20 18 17 38 38 H 0.96703 * 113.99642 * 180.02562 * 21 20 18 39 39 H 1.09002 * 112.85185 * 50.33065 * 22 18 17 40 40 H 1.08995 * 113.61516 * 334.56963 * 23 22 18 41 41 H 1.09002 * 113.61082 * 105.47220 * 23 22 18 42 42 H 1.08995 * 113.53606 * 270.80843 * 24 23 22 43 43 H 1.09004 * 113.74015 * 139.95005 * 24 23 22 44 44 H 1.08996 * 113.61745 * 220.08453 * 25 24 23 45 45 H 1.09002 * 113.61298 * 89.18801 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1583 -6.0431 0.8441 14 7 3.2387 -6.1417 -1.2529 15 6 1.7253 -7.4516 0.1251 16 8 1.5137 -8.1252 -0.8610 17 7 1.2901 -7.8670 1.3311 18 6 0.5621 -9.1327 1.4510 19 1 0.9628 -9.8514 0.7362 20 6 -0.9215 -8.8971 1.1601 21 8 -1.4747 -8.0460 2.1659 22 6 0.7228 -9.6810 2.8702 23 6 2.0530 -10.4181 3.0989 24 6 1.2510 -11.4429 3.9217 25 6 0.0235 -11.0326 3.0913 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8898 28 1 0.6241 -2.5567 0.8902 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6047 -0.8877 31 1 0.8548 -5.0449 -0.8895 32 1 0.8528 -5.0446 0.8905 33 1 2.6269 -6.2394 -2.0494 34 1 3.8004 -5.3070 -1.3287 35 1 1.4597 -7.3284 2.1198 36 1 -1.0298 -8.4241 0.1841 37 1 -1.4480 -9.8514 1.1619 38 1 -2.4147 -7.8538 2.0450 39 1 0.4959 -8.9413 3.6380 40 1 2.4851 -10.8318 2.1878 41 1 2.7715 -9.8492 3.6890 42 1 1.1697 -11.1853 4.9777 43 1 1.5622 -12.4750 3.7606 44 1 -0.8940 -10.9593 3.6751 45 1 -0.1002 -11.6148 2.1781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595963439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:44 Heat of formation + Delta-G solvation = -95.196717 kcal Electronic energy + Delta-G solvation = -22799.887835 eV Core-core repulsion = 19430.781107 eV Total energy + Delta-G solvation = -3369.106728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30561 -38.94162 -36.78211 -35.93318 -34.30911 -33.33686 -31.22188 -29.97037 -27.71047 -26.13537 -25.28315 -25.18484 -22.74600 -21.32985 -20.39288 -20.13885 -19.39843 -17.56762 -17.21222 -16.63570 -16.30897 -15.62570 -15.31421 -14.87289 -14.72555 -14.49583 -14.36942 -14.06611 -13.85960 -13.31660 -13.11045 -12.73572 -12.60728 -12.43941 -12.02023 -11.86267 -11.83529 -11.73177 -11.18913 -10.83315 -10.78978 -10.74882 -10.65250 -10.57954 -10.50519 -10.16946 -9.78340 -9.69077 -9.35899 -9.13680 -9.01406 -8.44933 -8.36614 -6.02319 -4.05365 2.77617 3.11889 3.31487 3.36061 3.38353 4.13445 4.27377 4.38142 4.43502 4.45394 4.59460 4.84974 4.89293 4.98361 5.10977 5.21149 5.27670 5.33441 5.33896 5.38517 5.42939 5.46577 5.58575 5.63980 5.71012 5.74763 5.81178 5.95200 6.00913 6.22166 6.29011 6.49480 6.59972 6.76143 7.03850 7.20444 7.46967 7.59519 7.62944 7.63827 7.76818 7.96894 8.34023 8.38835 9.01609 9.59032 11.08878 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.003014 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.225299 B = 9289.253387 C = 9664.678160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.108 4.108 11 C -0.145 4.145 12 C 0.075 3.925 13 H 0.098 0.902 14 N -0.830 5.830 15 C 0.526 3.474 16 O -0.541 6.541 17 N -0.719 5.719 18 C 0.160 3.840 19 H 0.097 0.903 20 C 0.064 3.936 21 O -0.566 6.566 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.130 4.130 26 H 0.261 0.739 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.351 0.649 35 H 0.403 0.597 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.378 0.622 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -21.997 6.633 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.185 4.185 12 C -0.040 4.040 13 H 0.116 0.884 14 N -0.362 5.362 15 C 0.312 3.688 16 O -0.417 6.417 17 N -0.371 5.371 18 C 0.055 3.945 19 H 0.115 0.885 20 C -0.015 4.015 21 O -0.371 6.371 22 C -0.129 4.129 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.168 4.168 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.238 0.762 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.225 0.775 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.505 -23.057 6.406 23.936 hybrid contribution -0.747 2.171 -0.075 2.297 sum -0.242 -20.886 6.331 21.826 Atomic orbital electron populations 1.69957 1.06079 1.26740 1.50705 1.25030 0.94849 0.99286 0.95283 0.86656 0.79585 0.83117 0.78634 1.20230 1.21282 1.20215 1.21218 0.92976 0.91110 1.50798 0.92740 1.19069 0.93923 0.91259 0.97185 1.21649 0.99121 0.93556 1.00295 1.22387 0.98298 0.95053 1.02784 1.21431 0.95490 0.91469 0.95607 0.88393 1.58698 1.28210 1.45995 1.03318 1.20735 0.78221 0.87083 0.82727 1.90639 1.57313 1.56725 1.37066 1.45920 1.57856 1.23289 1.10010 1.21039 0.89752 0.86409 0.97311 0.88488 1.22608 0.94231 0.93445 0.91212 1.86462 1.29137 1.70404 1.51086 1.22713 0.97081 0.96766 0.96307 1.23019 0.96298 0.97761 1.00453 1.22831 0.96863 0.99223 0.99058 1.22852 0.97709 0.95908 1.00309 0.92926 0.96767 0.96616 0.93064 0.93401 0.91947 0.91454 0.83820 0.83431 0.76234 0.93163 0.93132 0.77543 0.88060 0.90070 0.91341 0.90193 0.91487 0.91203 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.11 4.92 -26.73 -0.13 -2.24 16 11 C -0.15 -2.39 4.84 -26.73 -0.13 -2.52 16 12 C 0.08 1.07 3.21 -68.86 -0.22 0.85 16 13 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 14 N -0.83 -11.99 8.94 -5.65 -0.05 -12.04 16 15 C 0.53 7.69 7.04 -10.99 -0.08 7.62 16 16 O -0.54 -9.52 15.91 5.56 0.09 -9.43 16 17 N -0.72 -8.45 5.02 -53.81 -0.27 -8.72 16 18 C 0.16 1.68 2.17 -67.93 -0.15 1.53 16 19 H 0.10 1.12 7.41 -51.93 -0.38 0.74 16 20 C 0.06 0.66 6.58 37.16 0.24 0.90 16 21 O -0.57 -5.77 13.01 -35.23 -0.46 -6.22 16 22 C -0.11 -0.93 2.87 -89.81 -0.26 -1.19 16 23 C -0.14 -1.09 7.65 -25.82 -0.20 -1.29 16 24 C -0.14 -0.98 8.09 -25.83 -0.21 -1.19 16 25 C -0.13 -0.94 6.85 -25.93 -0.18 -1.12 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.90 6.87 -51.93 -0.36 0.54 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.35 5.21 8.58 -39.29 -0.34 4.87 16 34 H 0.35 4.76 7.55 -39.29 -0.30 4.46 16 35 H 0.40 4.23 8.60 -40.82 -0.35 3.88 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 38 H 0.38 2.53 9.12 45.56 0.42 2.95 16 39 H 0.10 0.93 8.02 -51.93 -0.42 0.52 16 40 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -32.87 366.30 -8.46 -41.33 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.15 Total: 10.90 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.85 Total: -11.70 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.42 Total: -46.97 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.37 Total: -15.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.87 -8.46 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595963439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.865 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds