Wall clock time and date at job start Tue Mar 31 2020 03:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99829 * 2 1 4 4 H 1.48496 * 109.47095 * 239.99499 * 3 2 1 5 5 H 1.48498 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47183 * 119.99618 * 3 2 1 7 7 C 1.37869 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00230 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47139 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47396 * 54.99706 * 12 11 10 14 14 N 1.46905 * 109.47084 * 294.99736 * 12 11 10 15 15 C 1.50700 * 109.47064 * 174.99796 * 12 11 10 16 16 O 1.21282 * 119.99872 * 100.00207 * 15 12 11 17 17 N 1.34777 * 119.99986 * 280.00094 * 15 12 11 18 18 C 1.46501 * 119.99862 * 180.02562 * 17 15 12 19 19 H 1.08995 * 109.46992 * 34.99731 * 18 17 15 20 20 C 1.53004 * 109.46931 * 274.99943 * 18 17 15 21 21 O 1.42901 * 109.46915 * 294.99778 * 20 18 17 22 22 C 1.52997 * 109.47053 * 154.99904 * 18 17 15 23 23 C 1.53785 * 113.61368 * 279.13429 * 22 18 17 24 24 C 1.53956 * 87.01658 * 220.04804 * 23 22 18 25 25 C 1.53773 * 87.11227 * 25.36233 * 24 23 22 26 26 H 0.97001 * 120.00076 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46419 * 60.00185 * 9 7 2 28 28 H 1.08993 * 109.47343 * 300.00285 * 9 7 2 29 29 H 1.08994 * 109.47156 * 60.00186 * 10 9 7 30 30 H 1.09004 * 109.47219 * 299.99811 * 10 9 7 31 31 H 1.08995 * 109.46766 * 59.99907 * 11 10 9 32 32 H 1.09001 * 109.46844 * 300.00237 * 11 10 9 33 33 H 1.00901 * 110.99869 * 300.00384 * 14 12 11 34 34 H 1.00896 * 110.99543 * 63.95506 * 14 12 11 35 35 H 0.96998 * 119.99710 * 359.97438 * 17 15 12 36 36 H 1.08998 * 109.47266 * 54.99795 * 20 18 17 37 37 H 1.08996 * 109.46905 * 175.00337 * 20 18 17 38 38 H 0.96703 * 113.99642 * 180.02562 * 21 20 18 39 39 H 1.09002 * 112.85185 * 50.33065 * 22 18 17 40 40 H 1.08995 * 113.61516 * 334.56963 * 23 22 18 41 41 H 1.09002 * 113.61082 * 105.47220 * 23 22 18 42 42 H 1.08995 * 113.53606 * 270.80843 * 24 23 22 43 43 H 1.09004 * 113.74015 * 139.95005 * 24 23 22 44 44 H 1.08996 * 113.61745 * 220.08453 * 25 24 23 45 45 H 1.09002 * 113.61298 * 89.18801 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1583 -6.0431 0.8441 14 7 3.2387 -6.1417 -1.2529 15 6 1.7253 -7.4516 0.1251 16 8 1.5137 -8.1252 -0.8610 17 7 1.2901 -7.8670 1.3311 18 6 0.5621 -9.1327 1.4510 19 1 0.9628 -9.8514 0.7362 20 6 -0.9215 -8.8971 1.1601 21 8 -1.4747 -8.0460 2.1659 22 6 0.7228 -9.6810 2.8702 23 6 2.0530 -10.4181 3.0989 24 6 1.2510 -11.4429 3.9217 25 6 0.0235 -11.0326 3.0913 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5570 -0.8898 28 1 0.6241 -2.5567 0.8902 29 1 2.8713 -3.6039 0.8922 30 1 2.8727 -3.6047 -0.8877 31 1 0.8548 -5.0449 -0.8895 32 1 0.8528 -5.0446 0.8905 33 1 2.6269 -6.2394 -2.0494 34 1 3.8004 -5.3070 -1.3287 35 1 1.4597 -7.3284 2.1198 36 1 -1.0298 -8.4241 0.1841 37 1 -1.4480 -9.8514 1.1619 38 1 -2.4147 -7.8538 2.0450 39 1 0.4959 -8.9413 3.6380 40 1 2.4851 -10.8318 2.1878 41 1 2.7715 -9.8492 3.6890 42 1 1.1697 -11.1853 4.9777 43 1 1.5622 -12.4750 3.7606 44 1 -0.8940 -10.9593 3.6751 45 1 -0.1002 -11.6148 2.1781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595963439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:44 Heat of formation + Delta-G solvation = -120.752883 kcal Electronic energy + Delta-G solvation = -22800.996034 eV Core-core repulsion = 19430.781107 eV Total energy + Delta-G solvation = -3370.214926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29192 -39.81573 -37.63164 -37.28395 -35.32120 -35.25878 -32.99777 -30.88902 -29.30862 -27.05286 -26.51383 -25.94474 -24.36865 -22.33724 -21.79514 -21.32135 -20.20280 -18.52041 -18.45701 -18.19204 -17.54517 -16.54264 -16.40403 -16.27546 -16.09013 -15.92614 -15.37119 -15.18402 -14.81884 -14.46504 -14.27901 -14.23226 -13.66220 -13.60401 -13.35792 -13.27749 -12.90450 -12.56798 -12.55137 -12.51288 -12.44168 -12.34909 -11.52958 -11.50664 -11.44476 -11.34384 -11.23885 -11.14110 -10.99959 -10.65402 -10.56056 -10.01004 -9.67307 -8.20705 -6.32329 1.39998 1.42829 1.50651 1.60752 2.12190 2.40543 3.12547 3.37911 3.55052 3.67949 3.71751 3.78608 3.87165 3.98161 4.01314 4.08617 4.22220 4.34976 4.40143 4.47382 4.52887 4.59237 4.74565 4.76970 4.86389 4.89523 5.00613 5.02044 5.11641 5.13409 5.17356 5.22777 5.31392 5.50585 5.51067 5.65315 5.71990 5.84206 6.05038 6.22990 6.48412 6.56181 6.83454 6.85376 7.24316 7.37495 8.90868 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.003014 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.225299 B = 9289.253387 C = 9664.678160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.094 4.094 11 C -0.132 4.132 12 C 0.084 3.916 13 H 0.119 0.881 14 N -0.831 5.831 15 C 0.524 3.476 16 O -0.574 6.574 17 N -0.707 5.707 18 C 0.156 3.844 19 H 0.086 0.914 20 C 0.068 3.932 21 O -0.577 6.577 22 C -0.106 4.106 23 C -0.139 4.139 24 C -0.136 4.136 25 C -0.126 4.126 26 H 0.263 0.737 27 H -0.016 1.016 28 H -0.010 1.010 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.345 0.655 34 H 0.356 0.644 35 H 0.411 0.589 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.393 0.607 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -22.445 7.730 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.172 4.172 12 C -0.031 4.031 13 H 0.137 0.863 14 N -0.363 5.363 15 C 0.311 3.689 16 O -0.453 6.453 17 N -0.358 5.358 18 C 0.052 3.948 19 H 0.104 0.896 20 C -0.011 4.011 21 O -0.384 6.384 22 C -0.125 4.125 23 C -0.177 4.177 24 C -0.174 4.174 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.002 0.998 28 H 0.009 0.991 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.247 0.753 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.688 -23.514 7.535 24.749 hybrid contribution -1.172 2.290 -0.400 2.603 sum 0.516 -21.224 7.135 22.397 Atomic orbital electron populations 1.70099 1.07900 1.27815 1.51746 1.26007 0.95742 1.03479 0.94763 0.85507 0.78261 0.78060 0.79277 1.19178 1.21052 1.18943 1.21708 0.93683 0.92316 1.50434 0.91820 1.18988 0.94454 0.93318 0.94486 1.21432 0.97931 0.92559 1.01261 1.22192 0.98296 0.94608 1.02055 1.21376 0.95096 0.90311 0.96366 0.86286 1.58714 1.28077 1.46246 1.03223 1.20766 0.78140 0.86995 0.83046 1.90626 1.58699 1.57744 1.38267 1.45888 1.56851 1.23663 1.09401 1.21168 0.89708 0.85509 0.98434 0.89556 1.22526 0.94384 0.94211 0.89947 1.86418 1.30603 1.70510 1.50905 1.22671 0.98026 0.97191 0.94588 1.23020 0.96089 0.98103 1.00479 1.22818 0.96057 0.99341 0.99154 1.22862 0.98039 0.94865 1.00665 0.92824 0.99772 0.99125 0.91840 0.92545 0.93563 0.91411 0.84217 0.82838 0.75326 0.95692 0.90920 0.75831 0.88434 0.90695 0.91208 0.89562 0.90711 0.90731 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.29 21.44 0.28 -56.91 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.61 4.92 30.59 0.15 -3.46 16 11 C -0.13 -4.29 4.84 30.59 0.15 -4.14 16 12 C 0.08 2.29 3.21 44.17 0.14 2.44 16 13 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 14 N -0.83 -23.14 8.94 -171.79 -1.54 -24.67 16 15 C 0.52 15.05 7.04 87.66 0.62 15.67 16 16 O -0.57 -20.26 15.91 -3.04 -0.05 -20.31 16 17 N -0.71 -16.05 5.02 -442.53 -2.22 -18.28 16 18 C 0.16 3.16 2.17 44.99 0.10 3.26 16 19 H 0.09 1.97 7.41 -2.39 -0.02 1.95 16 20 C 0.07 1.35 6.58 71.98 0.47 1.83 16 21 O -0.58 -11.18 13.01 -148.98 -1.94 -13.12 16 22 C -0.11 -1.65 2.87 -10.27 -0.03 -1.68 16 23 C -0.14 -2.01 7.65 31.18 0.24 -1.77 16 24 C -0.14 -1.59 8.09 31.18 0.25 -1.34 16 25 C -0.13 -1.59 6.85 31.12 0.21 -1.38 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 2.06 6.87 -2.39 -0.02 2.05 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.34 10.19 8.58 -89.69 -0.77 9.42 16 34 H 0.36 9.14 7.55 -89.70 -0.68 8.46 16 35 H 0.41 8.08 8.60 -92.71 -0.80 7.29 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 38 H 0.39 4.88 9.12 -74.06 -0.68 4.20 16 39 H 0.10 1.64 8.02 -2.39 -0.02 1.62 16 40 H 0.07 1.18 7.99 -2.39 -0.02 1.16 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -70.67 366.30 -2.20 -72.88 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -1.92 Total: 33.57 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.15 Total: -19.15 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.47 Total: -99.86 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.99 Total: -33.43 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.67 -2.20 -72.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595963439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.876 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds