Wall clock time and date at job start Tue Mar 31 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99424 * 2 1 4 4 C 1.52999 * 109.46645 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47461 * 65.00377 * 4 3 2 6 6 C 1.37101 * 119.99741 * 264.91972 * 5 4 3 7 7 H 1.07998 * 120.00070 * 144.16133 * 6 5 4 8 8 C 1.38948 * 119.99883 * 324.15875 * 6 5 4 9 9 N 1.31403 * 120.00303 * 337.13547 * 8 6 5 10 10 Si 1.86803 * 119.99665 * 157.13306 * 8 6 5 11 11 H 1.48497 * 109.47280 * 60.00148 * 10 8 6 12 12 H 1.48508 * 109.47009 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47212 * 299.99798 * 10 8 6 14 14 C 1.34774 * 120.00341 * 84.91281 * 5 4 3 15 15 O 1.21298 * 119.99866 * 0.02562 * 14 5 4 16 16 C 1.50702 * 120.00221 * 180.02562 * 14 5 4 17 17 C 1.53002 * 109.47122 * 185.21456 * 16 14 5 18 18 H 1.08993 * 110.21736 * 306.03376 * 17 16 14 19 19 C 1.54481 * 110.31620 * 68.01062 * 17 16 14 20 20 C 1.54630 * 101.76826 * 93.61906 * 19 17 16 21 21 C 1.51283 * 104.19247 * 24.79874 * 20 19 17 22 22 O 1.21279 * 124.94061 * 164.01663 * 21 20 19 23 23 N 1.34421 * 110.11369 * 343.74471 * 21 20 19 24 24 C 1.46508 * 124.34356 * 179.57351 * 23 21 20 25 25 H 1.09008 * 109.46820 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46855 * 299.99541 * 1 2 3 27 27 H 1.08995 * 109.47611 * 59.99780 * 1 2 3 28 28 H 1.08996 * 109.47191 * 60.00369 * 3 2 1 29 29 H 1.08997 * 109.47443 * 300.00109 * 3 2 1 30 30 H 1.08995 * 109.47544 * 304.99859 * 4 3 2 31 31 H 1.09005 * 109.47065 * 184.99935 * 4 3 2 32 32 H 0.97004 * 120.00643 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46805 * 65.22154 * 16 14 5 34 34 H 1.08994 * 109.47210 * 305.21862 * 16 14 5 35 35 H 1.09000 * 110.96943 * 211.74260 * 19 17 16 36 36 H 1.09005 * 110.96847 * 335.46053 * 19 17 16 37 37 H 1.09001 * 110.48319 * 266.12013 * 20 19 17 38 38 H 1.08998 * 110.48768 * 143.47592 * 20 19 17 39 39 H 1.09000 * 109.47412 * 357.61085 * 24 23 21 40 40 H 1.08998 * 109.47065 * 117.61561 * 24 23 21 41 41 H 1.09007 * 109.46510 * 237.60934 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1973 -0.7873 -1.3073 7 1 3.9547 -1.3385 -2.2037 8 6 4.7340 -1.4481 -0.2091 9 7 5.4335 -0.7816 0.6815 10 14 4.4611 -3.2841 0.0011 11 1 5.0301 -4.0059 -1.1653 12 1 5.1309 -3.7450 1.2438 13 1 3.0050 -3.5609 0.0923 14 6 4.1628 1.3230 -2.3511 15 8 3.9670 2.5191 -2.3027 16 6 4.6152 0.6849 -3.6392 17 6 4.8746 1.7726 -4.6835 18 1 3.9964 2.4092 -4.7905 19 6 6.1029 2.6193 -4.2824 20 6 7.2428 1.9000 -5.0401 21 6 6.5465 1.2181 -6.1972 22 8 7.1030 0.7783 -7.1810 23 7 5.2221 1.1655 -5.9736 24 6 4.2503 0.5778 -6.8992 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8899 30 1 3.8515 0.5684 0.8409 31 1 3.9784 2.1767 0.0889 32 1 5.8086 -1.2430 1.4479 33 1 3.8398 0.0102 -4.0023 34 1 5.5326 0.1233 -3.4639 35 1 5.9957 3.6486 -4.6246 36 1 6.2663 2.5835 -3.2052 37 1 7.7233 1.1632 -4.3963 38 1 7.9727 2.6220 -5.4060 39 1 4.7644 0.2374 -7.7981 40 1 3.7577 -0.2682 -6.4200 41 1 3.5057 1.3271 -7.1682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:39 Heat of formation + Delta-G solvation = -107.612670 kcal Electronic energy + Delta-G solvation = -23696.723381 eV Core-core repulsion = 20191.245162 eV Total energy + Delta-G solvation = -3505.478218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33098 -38.66405 -37.09011 -36.21451 -34.71193 -32.54967 -31.63258 -30.57402 -28.85677 -26.42211 -25.92546 -25.23210 -24.48925 -22.14172 -20.95817 -19.15045 -18.96180 -17.07824 -16.53609 -16.15271 -15.76765 -15.45872 -15.42010 -14.94528 -14.46882 -14.37367 -14.25722 -13.93294 -13.43548 -13.33488 -12.89080 -12.54083 -12.37382 -12.06561 -12.00212 -11.90853 -11.78727 -11.41164 -11.20869 -11.08975 -11.04649 -10.71558 -10.52974 -10.41448 -10.37444 -10.07684 -9.57055 -9.18479 -9.01246 -8.63939 -8.35284 -7.56538 -6.39890 -4.03349 2.81459 3.15423 3.23263 3.23885 3.29296 3.82340 4.13671 4.45859 4.56013 4.78361 4.82863 5.04943 5.19648 5.29008 5.45465 5.51262 5.61934 5.67619 5.68534 5.80367 5.84784 5.88571 5.94342 5.98796 6.03551 6.20011 6.23715 6.29173 6.34110 6.43380 6.53500 6.70025 6.81840 7.21032 7.34615 7.43894 7.76574 7.94303 8.32915 8.39719 9.07675 9.46214 9.87979 10.63409 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.005591 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.420090 B = 5006.501774 C = 5636.923896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.116 3.884 5 N -0.424 5.424 6 C -0.329 4.329 7 H 0.086 0.914 8 C 0.052 3.948 9 N -0.859 5.859 10 Si 0.911 3.089 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.469 3.531 15 O -0.612 6.612 16 C -0.127 4.127 17 C 0.148 3.852 18 H 0.092 0.908 19 C -0.114 4.114 20 C -0.158 4.158 21 C 0.518 3.482 22 O -0.549 6.549 23 N -0.617 5.617 24 C 0.093 3.907 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 2.951 -4.402 6.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.008 4.008 5 N -0.141 5.141 6 C -0.456 4.456 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.258 3.742 15 O -0.499 6.499 16 C -0.168 4.168 17 C 0.044 3.956 18 H 0.110 0.890 19 C -0.152 4.152 20 C -0.198 4.198 21 C 0.307 3.693 22 O -0.427 6.427 23 N -0.350 5.350 24 C -0.049 4.049 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.863 3.042 -4.736 6.827 hybrid contribution -0.595 -0.928 0.343 1.154 sum -4.459 2.115 -4.393 6.607 Atomic orbital electron populations 1.22645 0.83407 1.01733 0.98836 1.88140 1.17390 1.27760 1.95042 1.23036 0.96554 0.84300 0.98676 1.21425 0.89175 0.99025 0.91160 1.43326 1.55818 1.07240 1.07720 1.19202 1.41941 0.81940 1.02551 0.89648 1.25219 0.93680 0.99833 0.96659 1.69927 1.28944 1.37559 1.13123 0.86263 0.79054 0.83176 0.77737 1.19969 1.21093 1.19585 1.20125 0.81466 0.86282 0.86330 1.90524 1.58293 1.15068 1.86057 1.21656 1.03479 0.98137 0.93535 1.21460 0.99274 0.93671 0.81166 0.89024 1.22538 0.91988 0.98325 1.02369 1.22390 0.99263 1.01404 0.96732 1.20999 0.82635 0.78400 0.87292 1.90668 1.69792 1.50169 1.32088 1.48304 1.07405 1.59234 1.20104 1.21527 0.92030 0.98078 0.93287 0.90452 0.95148 0.94990 0.94320 0.94030 0.87107 0.91119 0.92013 0.90227 0.89084 0.90443 0.88311 0.87691 0.88476 0.90280 0.92039 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.53 10.42 -35.23 -0.37 -7.90 16 3 C 0.05 1.03 6.25 37.16 0.23 1.27 16 4 C 0.12 2.63 5.30 -4.04 -0.02 2.61 16 5 N -0.42 -10.01 2.50 -114.81 -0.29 -10.29 16 6 C -0.33 -8.02 8.31 -14.93 -0.12 -8.14 16 7 H 0.09 2.03 7.19 -52.49 -0.38 1.66 16 8 C 0.05 1.29 4.88 -17.47 -0.09 1.20 16 9 N -0.86 -21.97 11.51 55.50 0.64 -21.33 16 10 Si 0.91 19.59 29.61 -169.99 -5.03 14.56 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 C 0.47 10.30 6.97 -10.99 -0.08 10.22 16 15 O -0.61 -14.07 14.66 5.54 0.08 -13.99 16 16 C -0.13 -2.34 4.13 -27.88 -0.12 -2.46 16 17 C 0.15 2.35 2.72 -67.01 -0.18 2.17 16 18 H 0.09 1.48 7.87 -51.93 -0.41 1.07 16 19 C -0.11 -1.70 6.14 -25.10 -0.15 -1.86 16 20 C -0.16 -2.23 6.86 -26.74 -0.18 -2.42 16 21 C 0.52 8.62 8.02 -10.86 -0.09 8.54 16 22 O -0.55 -10.75 17.35 5.56 0.10 -10.66 16 23 N -0.62 -9.43 2.97 -172.70 -0.51 -9.95 16 24 C 0.09 1.18 11.14 59.85 0.67 1.85 16 25 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 2.72 5.52 -51.93 -0.29 2.44 16 31 H 0.07 1.59 7.58 -51.93 -0.39 1.20 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 34 H 0.09 1.75 7.95 -51.93 -0.41 1.34 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.66 6.91 -51.93 -0.36 1.30 16 37 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.01 7.54 -51.93 -0.39 0.62 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -29.61 340.26 -5.68 -35.29 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.40 Total: 4.57 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 0.98 Total: 14.57 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.16 Total: -41.57 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.19 Total: -32.55 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.61 -5.68 -35.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.325 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds