Wall clock time and date at job start Tue Mar 31 2020 02:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99424 * 2 1 4 4 C 1.52999 * 109.46645 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47461 * 65.00377 * 4 3 2 6 6 C 1.37101 * 119.99741 * 264.91972 * 5 4 3 7 7 H 1.07998 * 120.00070 * 144.16133 * 6 5 4 8 8 C 1.38948 * 119.99883 * 324.15875 * 6 5 4 9 9 N 1.31403 * 120.00303 * 337.13547 * 8 6 5 10 10 Si 1.86803 * 119.99665 * 157.13306 * 8 6 5 11 11 H 1.48497 * 109.47280 * 60.00148 * 10 8 6 12 12 H 1.48508 * 109.47009 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47212 * 299.99798 * 10 8 6 14 14 C 1.34774 * 120.00341 * 84.91281 * 5 4 3 15 15 O 1.21298 * 119.99866 * 0.02562 * 14 5 4 16 16 C 1.50702 * 120.00221 * 180.02562 * 14 5 4 17 17 C 1.53002 * 109.47122 * 185.21456 * 16 14 5 18 18 H 1.08993 * 110.21736 * 306.03376 * 17 16 14 19 19 C 1.54481 * 110.31620 * 68.01062 * 17 16 14 20 20 C 1.54630 * 101.76826 * 93.61906 * 19 17 16 21 21 C 1.51283 * 104.19247 * 24.79874 * 20 19 17 22 22 O 1.21279 * 124.94061 * 164.01663 * 21 20 19 23 23 N 1.34421 * 110.11369 * 343.74471 * 21 20 19 24 24 C 1.46508 * 124.34356 * 179.57351 * 23 21 20 25 25 H 1.09008 * 109.46820 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46855 * 299.99541 * 1 2 3 27 27 H 1.08995 * 109.47611 * 59.99780 * 1 2 3 28 28 H 1.08996 * 109.47191 * 60.00369 * 3 2 1 29 29 H 1.08997 * 109.47443 * 300.00109 * 3 2 1 30 30 H 1.08995 * 109.47544 * 304.99859 * 4 3 2 31 31 H 1.09005 * 109.47065 * 184.99935 * 4 3 2 32 32 H 0.97004 * 120.00643 * 180.02562 * 9 8 6 33 33 H 1.09005 * 109.46805 * 65.22154 * 16 14 5 34 34 H 1.08994 * 109.47210 * 305.21862 * 16 14 5 35 35 H 1.09000 * 110.96943 * 211.74260 * 19 17 16 36 36 H 1.09005 * 110.96847 * 335.46053 * 19 17 16 37 37 H 1.09001 * 110.48319 * 266.12013 * 20 19 17 38 38 H 1.08998 * 110.48768 * 143.47592 * 20 19 17 39 39 H 1.09000 * 109.47412 * 357.61085 * 24 23 21 40 40 H 1.08998 * 109.47065 * 117.61561 * 24 23 21 41 41 H 1.09007 * 109.46510 * 237.60934 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1973 -0.7873 -1.3073 7 1 3.9547 -1.3385 -2.2037 8 6 4.7340 -1.4481 -0.2091 9 7 5.4335 -0.7816 0.6815 10 14 4.4611 -3.2841 0.0011 11 1 5.0301 -4.0059 -1.1653 12 1 5.1309 -3.7450 1.2438 13 1 3.0050 -3.5609 0.0923 14 6 4.1628 1.3230 -2.3511 15 8 3.9670 2.5191 -2.3027 16 6 4.6152 0.6849 -3.6392 17 6 4.8746 1.7726 -4.6835 18 1 3.9964 2.4092 -4.7905 19 6 6.1029 2.6193 -4.2824 20 6 7.2428 1.9000 -5.0401 21 6 6.5465 1.2181 -6.1972 22 8 7.1030 0.7783 -7.1810 23 7 5.2221 1.1655 -5.9736 24 6 4.2503 0.5778 -6.8992 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8899 30 1 3.8515 0.5684 0.8409 31 1 3.9784 2.1767 0.0889 32 1 5.8086 -1.2430 1.4479 33 1 3.8398 0.0102 -4.0023 34 1 5.5326 0.1233 -3.4639 35 1 5.9957 3.6486 -4.6246 36 1 6.2663 2.5835 -3.2052 37 1 7.7233 1.1632 -4.3963 38 1 7.9727 2.6220 -5.4060 39 1 4.7644 0.2374 -7.7981 40 1 3.7577 -0.2682 -6.4200 41 1 3.5057 1.3271 -7.1682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:36 Heat of formation + Delta-G solvation = -126.115421 kcal Electronic energy + Delta-G solvation = -23697.525720 eV Core-core repulsion = 20191.245162 eV Total energy + Delta-G solvation = -3506.280558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -41.66432 -40.34113 -38.59359 -37.63072 -36.48444 -33.72946 -33.47196 -32.10432 -30.39172 -27.53063 -27.28188 -26.84603 -26.06375 -23.68628 -22.34150 -20.84631 -20.30772 -18.72719 -18.02548 -17.61513 -17.16743 -17.04359 -16.89482 -16.39450 -16.03958 -15.92118 -15.85614 -15.38481 -14.77725 -14.63712 -14.24401 -14.03065 -13.72774 -13.60530 -13.37303 -13.20843 -13.06485 -13.00013 -12.87099 -12.68162 -12.50104 -12.40847 -12.11694 -11.83347 -11.76077 -11.71034 -10.96491 -10.90372 -10.51928 -10.29213 -9.72881 -9.40748 -8.25690 -5.93272 1.43986 1.51482 1.51675 1.57876 2.00365 2.08897 2.37863 2.97874 3.04259 3.22385 3.44804 3.61199 3.90645 4.07975 4.25362 4.30053 4.34943 4.39759 4.50234 4.56084 4.56619 4.64162 4.64960 4.66788 4.75115 4.80634 4.84348 4.87189 4.93042 5.00293 5.17423 5.19187 5.39493 5.54374 5.57879 6.04815 6.08790 6.43607 6.46425 7.11919 7.21420 7.66952 8.07432 8.77708 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.005591 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.420090 B = 5006.501774 C = 5636.923896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.063 3.937 4 C 0.114 3.886 5 N -0.439 5.439 6 C -0.335 4.335 7 H 0.088 0.912 8 C 0.015 3.985 9 N -0.888 5.888 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.466 3.534 15 O -0.623 6.623 16 C -0.117 4.117 17 C 0.155 3.845 18 H 0.095 0.905 19 C -0.110 4.110 20 C -0.150 4.150 21 C 0.512 3.488 22 O -0.582 6.582 23 N -0.614 5.614 24 C 0.086 3.914 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.269 0.731 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 2.851 -4.980 7.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.014 4.014 4 C -0.010 4.010 5 N -0.156 5.156 6 C -0.462 4.462 7 H 0.106 0.894 8 C -0.189 4.189 9 N -0.525 5.525 10 Si 0.792 3.208 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.255 3.745 15 O -0.512 6.512 16 C -0.157 4.157 17 C 0.051 3.949 18 H 0.113 0.887 19 C -0.147 4.147 20 C -0.190 4.190 21 C 0.302 3.698 22 O -0.463 6.463 23 N -0.346 5.346 24 C -0.055 4.055 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.840 2.946 -5.320 7.772 hybrid contribution -0.368 -0.852 0.525 1.066 sum -5.208 2.094 -4.795 7.383 Atomic orbital electron populations 1.22874 0.80733 1.03186 1.00300 1.88071 1.20378 1.27995 1.95320 1.22832 0.94554 0.84491 0.99535 1.21358 0.91337 0.97885 0.90401 1.43522 1.56470 1.07307 1.08345 1.19371 1.41657 0.82455 1.02764 0.89440 1.25870 0.93467 1.03073 0.96479 1.70012 1.30003 1.38845 1.13656 0.85405 0.78506 0.79220 0.77712 1.19178 1.21140 1.19873 1.20646 0.80640 0.86207 0.86981 1.90504 1.58596 1.15624 1.86440 1.21565 1.02927 0.98712 0.92537 1.21339 0.99921 0.92881 0.80773 0.88690 1.22479 0.91779 0.99324 1.01163 1.22392 0.99301 1.01642 0.95675 1.21347 0.83083 0.78099 0.87287 1.90651 1.70409 1.51754 1.33487 1.48388 1.07561 1.58719 1.19914 1.21740 0.91986 0.99036 0.92757 0.89096 0.93067 0.94048 0.91790 0.94614 0.89197 0.91978 0.92094 0.89584 0.90059 0.88587 0.90337 0.87644 0.86223 0.90523 0.91225 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.00 10.42 -148.98 -1.55 -17.55 16 3 C 0.06 2.47 6.25 71.98 0.45 2.92 16 4 C 0.11 5.22 5.30 86.38 0.46 5.68 16 5 N -0.44 -20.77 2.50 -635.54 -1.59 -22.36 16 6 C -0.33 -16.30 8.31 84.04 0.70 -15.60 16 7 H 0.09 4.13 7.19 -2.91 -0.02 4.11 16 8 C 0.01 0.71 4.88 84.93 0.41 1.13 16 9 N -0.89 -45.90 11.51 21.66 0.25 -45.65 16 10 Si 0.97 39.91 29.61 68.60 2.03 41.94 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 12 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 C 0.47 20.31 6.97 87.66 0.61 20.92 16 15 O -0.62 -28.40 14.66 -3.09 -0.05 -28.44 16 16 C -0.12 -4.20 4.13 29.85 0.12 -4.07 16 17 C 0.15 4.70 2.72 45.45 0.12 4.82 16 18 H 0.10 2.88 7.87 -2.39 -0.02 2.86 16 19 C -0.11 -3.11 6.14 31.65 0.19 -2.92 16 20 C -0.15 -4.02 6.86 30.59 0.21 -3.81 16 21 C 0.51 16.37 8.02 87.90 0.71 17.08 16 22 O -0.58 -22.30 17.35 -3.03 -0.05 -22.36 16 23 N -0.61 -17.74 2.97 -818.89 -2.44 -20.18 16 24 C 0.09 2.02 11.14 127.77 1.42 3.44 16 25 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 4.51 5.52 -2.39 -0.01 4.49 16 31 H 0.06 2.85 7.58 -2.38 -0.02 2.84 16 32 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.09 2.97 7.90 -2.38 -0.02 2.95 16 34 H 0.08 3.10 7.95 -2.39 -0.02 3.08 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.59 6.91 -2.38 -0.02 2.58 16 37 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.08 1.86 7.54 -2.39 -0.02 1.84 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -62.58 340.26 4.28 -58.30 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 1.01 Total: 24.74 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 6.66 Total: 31.56 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -3.77 Total: -88.19 kcal Atomic # 8 Polarization: -66.70 SS G_CDS: -1.65 Total: -68.35 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -62.58 4.28 -58.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.815 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds