Wall clock time and date at job start Tue Mar 31 2020 03:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46944 * 2 1 4 4 C 1.52998 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47394 * 305.75156 * 4 3 2 6 6 O 1.42894 * 109.46955 * 65.75087 * 4 3 2 7 7 C 1.42901 * 114.00541 * 259.00477 * 6 4 3 8 8 C 1.50704 * 109.46977 * 185.74987 * 4 3 2 9 9 O 1.21276 * 119.99772 * 244.99811 * 8 4 3 10 10 N 1.34775 * 119.99750 * 65.00436 * 8 4 3 11 11 C 1.47080 * 120.88434 * 359.71810 * 10 8 4 12 12 C 1.53689 * 108.27661 * 128.75648 * 11 10 8 13 13 N 1.46893 * 109.26022 * 54.08472 * 12 11 10 14 14 C 1.46904 * 111.00601 * 172.60687 * 13 12 11 15 15 C 1.50699 * 109.46794 * 294.30152 * 14 13 12 16 16 H 1.08002 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99923 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00090 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00232 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46996 * 90.00413 * 19 17 15 21 21 H 1.48491 * 109.47418 * 210.00427 * 19 17 15 22 22 H 1.48503 * 109.47143 * 330.00938 * 19 17 15 23 23 C 1.46901 * 111.26732 * 296.75756 * 13 12 11 24 24 C 1.47078 * 120.88079 * 179.97438 * 10 8 4 25 25 H 1.08994 * 109.47509 * 299.99643 * 1 2 3 26 26 H 1.09000 * 109.47394 * 60.00240 * 1 2 3 27 27 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47253 * 119.99869 * 2 1 3 29 29 H 1.08997 * 109.47128 * 240.00688 * 2 1 3 30 30 H 1.09000 * 109.46982 * 299.96296 * 3 2 1 31 31 H 1.09002 * 109.46872 * 59.96124 * 3 2 1 32 32 H 1.08995 * 109.47705 * 174.65766 * 7 6 4 33 33 H 1.09000 * 109.46649 * 294.66004 * 7 6 4 34 34 H 1.09005 * 109.46458 * 54.65531 * 7 6 4 35 35 H 1.08997 * 109.62935 * 248.52733 * 11 10 8 36 36 H 1.09002 * 109.62521 * 9.10525 * 11 10 8 37 37 H 1.08998 * 109.65218 * 294.07966 * 12 11 10 38 38 H 1.09001 * 109.42112 * 173.95074 * 12 11 10 39 39 H 1.09006 * 109.46726 * 54.29769 * 14 13 12 40 40 H 1.08995 * 109.47362 * 174.30029 * 14 13 12 41 41 H 0.96998 * 120.00420 * 179.97438 * 18 17 15 42 42 H 1.09006 * 109.49413 * 303.13943 * 23 13 12 43 43 H 1.09005 * 109.51686 * 183.07817 * 23 13 12 44 44 H 1.09006 * 109.62880 * 350.89620 * 24 10 8 45 45 H 1.09003 * 109.63219 * 111.47320 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8423 0.8349 6 8 4.0467 0.8891 -1.2274 7 6 4.4752 -0.4703 -1.1248 8 6 4.0721 2.8563 0.1430 9 8 4.6931 3.3732 -0.7615 10 7 3.8312 3.5462 1.2755 11 6 3.0750 2.9405 2.3821 12 6 3.8874 3.1173 3.6746 13 7 4.2139 4.5386 3.8511 14 6 4.8373 4.7772 5.1597 15 6 3.8380 4.4931 6.2514 16 1 2.8396 4.1683 5.9983 17 6 4.1984 4.6479 7.5732 18 7 5.4140 5.0439 7.8813 19 14 2.9595 4.2965 8.9264 20 1 3.0544 2.8695 9.3259 21 1 3.2498 5.1593 10.0996 22 1 1.5894 4.5813 8.4294 23 6 5.0709 5.0275 2.7627 24 6 4.3127 4.9267 1.4354 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.6771 1.9561 -0.8903 31 1 1.6760 1.9565 0.8897 32 1 4.7328 -0.8459 -2.1151 33 1 5.3491 -0.5277 -0.4759 34 1 3.6706 -1.0741 -0.7051 35 1 2.1101 3.4376 2.4815 36 1 2.9246 1.8790 2.1849 37 1 4.8084 2.5378 3.6110 38 1 3.2976 2.7715 4.5236 39 1 5.6995 4.1205 5.2765 40 1 5.1605 5.8161 5.2243 41 1 5.6675 5.1532 8.8112 42 1 5.9755 4.4214 2.7117 43 1 5.3399 6.0671 2.9501 44 1 4.9810 5.1791 0.6120 45 1 3.4647 5.6115 1.4454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602203759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:07 Heat of formation + Delta-G solvation = -76.428589 kcal Electronic energy + Delta-G solvation = -23653.508793 eV Core-core repulsion = 20285.215913 eV Total energy + Delta-G solvation = -3368.292880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.39271 -38.30273 -37.17677 -35.03337 -34.21186 -32.48759 -31.22079 -29.88815 -28.17847 -26.81456 -25.77418 -24.23852 -23.32234 -21.98173 -21.44658 -20.56313 -18.83284 -17.54665 -16.74965 -16.41205 -16.05491 -15.50796 -15.13469 -14.79142 -14.71539 -14.45597 -14.26094 -13.90861 -13.67143 -13.54127 -13.31225 -12.90544 -12.65651 -12.41012 -12.12333 -11.93397 -11.68480 -11.50460 -11.34671 -11.29774 -11.10716 -11.00615 -10.82372 -10.76039 -10.63035 -10.56339 -10.06717 -9.90179 -9.31396 -9.30406 -8.54430 -8.45725 -7.37075 -6.09642 -4.11991 2.66563 2.83379 3.26359 3.33550 3.36867 3.76919 4.34717 4.36330 4.59696 4.63192 4.76019 4.84827 4.90647 5.13460 5.16956 5.21382 5.26526 5.30944 5.34731 5.41547 5.44908 5.47176 5.58113 5.60434 5.66159 5.72309 5.81895 5.88628 5.94503 6.00605 6.06024 6.25423 6.39762 6.40905 6.61732 6.90150 7.18039 7.23960 7.51282 7.70439 7.97499 8.08012 8.26852 8.43320 8.95132 9.52748 11.01171 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.004047 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.203593 B = 6917.685162 C = 7779.358985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.141 4.141 4 C 0.074 3.926 5 H 0.087 0.913 6 O -0.358 6.358 7 C 0.023 3.977 8 C 0.511 3.489 9 O -0.531 6.531 10 N -0.606 5.606 11 C 0.104 3.896 12 C 0.049 3.951 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.041 3.959 24 C 0.119 3.881 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.098 0.902 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -10.446 -14.317 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.179 4.179 4 C 0.013 3.987 5 H 0.105 0.895 6 O -0.275 6.275 7 C -0.073 4.073 8 C 0.297 3.703 9 O -0.407 6.407 10 N -0.341 5.341 11 C -0.019 4.019 12 C -0.080 4.080 13 N -0.260 5.260 14 C 0.068 3.932 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.440 -9.751 -14.841 18.890 hybrid contribution 0.270 -0.804 1.265 1.523 sum -6.170 -10.555 -13.576 18.270 Atomic orbital electron populations 1.21755 0.95310 1.01700 1.02139 1.21609 0.96476 0.96078 1.02176 1.22229 0.92825 0.98534 1.04308 1.21981 0.94997 0.92925 0.88800 0.89539 1.88018 1.83238 1.26605 1.29635 1.23005 0.98514 0.82822 1.02970 1.20492 0.79998 0.87713 0.82068 1.90676 1.40411 1.70173 1.39476 1.48186 1.55116 1.15168 1.15625 1.22282 0.95777 0.97649 0.86175 1.22430 0.98527 0.90595 0.96450 1.62076 1.44754 1.15422 1.03739 1.19736 0.93538 0.96721 0.83170 1.21129 0.98414 1.45308 0.90048 0.91790 1.24993 0.95375 0.95318 0.98841 1.69952 1.18265 1.46984 1.18452 0.86501 0.81541 0.78057 0.81340 1.20743 1.21235 1.19716 1.22406 0.94148 1.01037 0.91257 1.21755 0.99226 0.81508 0.97835 0.92385 0.92651 0.92680 0.91861 0.91409 0.90374 0.89464 0.89334 0.93930 0.93366 0.90244 0.90098 0.95695 0.88393 0.99108 0.94969 0.92835 0.95550 0.89959 0.89387 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.01 5.01 -26.73 -0.13 -1.15 16 3 C -0.14 -1.41 4.47 -26.73 -0.12 -1.53 16 4 C 0.07 0.91 1.85 -27.88 -0.05 0.86 16 5 H 0.09 0.92 6.97 -51.93 -0.36 0.56 16 6 O -0.36 -4.74 9.65 -55.09 -0.53 -5.28 16 7 C 0.02 0.21 10.34 101.05 1.04 1.26 16 8 C 0.51 8.05 7.13 -10.98 -0.08 7.98 16 9 O -0.53 -10.36 15.96 -14.30 -0.23 -10.59 16 10 N -0.61 -9.14 3.00 -172.21 -0.52 -9.65 16 11 C 0.10 1.41 5.03 -3.37 -0.02 1.40 16 12 C 0.05 0.86 5.47 -3.47 -0.02 0.84 16 13 N -0.53 -10.84 4.62 -235.49 -1.09 -11.93 16 14 C 0.19 4.83 4.72 -4.97 -0.02 4.80 16 15 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 16 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.04 0.72 5.62 -3.72 -0.02 0.70 16 24 C 0.12 1.87 6.59 -3.63 -0.02 1.84 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.55 6.27 -51.93 -0.33 0.22 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.83 5.44 -51.93 -0.28 0.55 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.35 5.92 -51.93 -0.31 0.04 16 35 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.08 0.87 4.92 -51.93 -0.26 0.62 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 1.80 6.67 -51.93 -0.35 1.46 16 39 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 40 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 44 H 0.09 1.39 7.06 -51.93 -0.37 1.03 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -32.01 349.67 -8.49 -40.51 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.65 Total: -2.64 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.54 Total: 3.79 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.87 Total: -46.84 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.76 Total: -15.87 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.01 -8.49 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602203759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.923 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds