Wall clock time and date at job start Tue Mar 31 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46802 * 2 1 4 4 C 1.52999 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47090 * 55.67878 * 4 3 2 6 6 O 1.42898 * 109.47108 * 295.68078 * 4 3 2 7 7 C 1.42903 * 114.00259 * 149.99731 * 6 4 3 8 8 C 1.50701 * 109.47453 * 175.67892 * 4 3 2 9 9 O 1.21282 * 120.00226 * 112.71636 * 8 4 3 10 10 N 1.34773 * 119.99986 * 292.72137 * 8 4 3 11 11 C 1.47086 * 120.88294 * 355.36891 * 10 8 4 12 12 C 1.53245 * 108.51967 * 231.16305 * 11 10 8 13 13 N 1.46896 * 109.33879 * 306.17043 * 12 11 10 14 14 C 1.46906 * 110.99782 * 187.25560 * 13 12 11 15 15 C 1.50696 * 109.46961 * 65.69522 * 14 13 12 16 16 H 1.07997 * 120.00725 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99584 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00139 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99864 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47180 * 89.99814 * 19 17 15 21 21 H 1.48503 * 109.47246 * 209.99731 * 19 17 15 22 22 H 1.48497 * 109.47348 * 329.99959 * 19 17 15 23 23 C 1.46897 * 111.27267 * 63.10216 * 13 12 11 24 24 C 1.47083 * 120.88099 * 175.33997 * 10 8 4 25 25 H 1.08998 * 109.47277 * 60.00612 * 1 2 3 26 26 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47066 * 299.99545 * 1 2 3 28 28 H 1.09002 * 109.46972 * 239.99673 * 2 1 3 29 29 H 1.09002 * 109.46810 * 119.99421 * 2 1 3 30 30 H 1.09002 * 109.47625 * 60.00073 * 3 2 1 31 31 H 1.09008 * 109.47202 * 299.99697 * 3 2 1 32 32 H 1.09004 * 109.46498 * 60.00262 * 7 6 4 33 33 H 1.09000 * 109.47183 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47039 * 300.00213 * 7 6 4 35 35 H 1.09004 * 109.62155 * 350.86569 * 11 10 8 36 36 H 1.08989 * 109.63033 * 111.45249 * 11 10 8 37 37 H 1.09001 * 109.49059 * 66.12823 * 12 11 10 38 38 H 1.08997 * 109.49102 * 186.20666 * 12 11 10 39 39 H 1.09000 * 109.47071 * 185.69308 * 14 13 12 40 40 H 1.09003 * 109.46834 * 305.69015 * 14 13 12 41 41 H 0.97002 * 120.00401 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.48905 * 176.93769 * 23 13 12 43 43 H 1.08999 * 109.48919 * 56.85983 * 23 13 12 44 44 H 1.08995 * 109.63409 * 248.54417 * 24 10 8 45 45 H 1.08992 * 109.62658 * 9.13593 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8633 -0.8496 6 8 4.0468 0.8586 1.2132 7 6 5.3064 0.1962 1.0840 8 6 4.0722 2.8594 -0.1077 9 8 4.6572 3.3676 0.8253 10 7 3.8713 3.5618 -1.2402 11 6 3.2549 2.9338 -2.4188 12 6 4.1450 3.2051 -3.6364 13 7 4.3806 4.6502 -3.7544 14 6 5.0851 4.9684 -5.0036 15 6 4.1970 4.6453 -6.1774 16 1 3.2083 4.2434 -6.0122 17 6 4.6471 4.8619 -7.4626 18 7 5.8512 5.3509 -7.6640 19 14 3.5465 4.4608 -8.9177 20 1 2.7334 5.6534 -9.2670 21 1 4.3851 4.0754 -10.0811 22 1 2.6461 3.3348 -8.5618 23 6 5.1126 5.1677 -2.5907 24 6 4.2621 4.9769 -1.3302 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8901 32 1 6.0602 0.9105 0.7530 33 1 5.5990 -0.2195 2.0483 34 1 5.2210 -0.6072 0.3525 35 1 3.1709 1.8588 -2.2589 36 1 2.2660 3.3604 -2.5859 37 1 5.0977 2.6902 -3.5124 38 1 3.6497 2.8425 -4.5370 39 1 5.3362 6.0290 -5.0191 40 1 5.9990 4.3777 -5.0659 41 1 6.1677 5.5036 -8.5681 42 1 5.3189 6.2285 -2.7331 43 1 6.0518 4.6255 -2.4813 44 1 3.3700 5.5999 -1.3928 45 1 4.8440 5.2526 -0.4508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602203777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:09 Heat of formation + Delta-G solvation = -101.697438 kcal Electronic energy + Delta-G solvation = -23642.205205 eV Core-core repulsion = 20272.816585 eV Total energy + Delta-G solvation = -3369.388620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58629 -39.46178 -38.28495 -36.24963 -35.50365 -34.37757 -32.44766 -30.92021 -29.83642 -27.50776 -27.23050 -25.48491 -24.67356 -23.65706 -22.21087 -21.84564 -20.08971 -18.65708 -18.48932 -17.84094 -17.10205 -16.70303 -16.41322 -16.04954 -15.94121 -15.71226 -15.43446 -15.36724 -15.26619 -14.39810 -14.37071 -14.14983 -14.05295 -13.55110 -13.27678 -13.08093 -12.94467 -12.76299 -12.59677 -12.43147 -12.40665 -12.31713 -12.14147 -11.96906 -11.94296 -11.75838 -11.52832 -11.44389 -11.29219 -10.60755 -10.29992 -9.81741 -9.08219 -8.19382 -6.29932 1.44665 1.45272 1.46436 1.57056 1.81594 2.42091 2.73729 3.12895 3.20083 3.32193 3.79344 3.83354 3.95239 4.00766 4.17859 4.19779 4.25078 4.32342 4.40535 4.44569 4.47146 4.51477 4.69733 4.70443 4.76566 4.79157 4.82132 4.91731 4.95529 4.99574 5.05679 5.18515 5.21140 5.30065 5.37993 5.40102 5.52928 5.64625 5.96460 6.02271 6.21482 6.37704 6.54196 6.86163 7.04145 7.40436 8.92114 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.004033 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.869617 B = 6940.994997 C = 7760.313227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.111 4.111 4 C 0.078 3.922 5 H 0.107 0.893 6 O -0.375 6.375 7 C 0.024 3.976 8 C 0.487 3.513 9 O -0.577 6.577 10 N -0.607 5.607 11 C 0.116 3.884 12 C 0.047 3.953 13 N -0.536 5.536 14 C 0.207 3.793 15 C -0.520 4.520 16 H 0.073 0.927 17 C 0.001 3.999 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.257 1.257 23 C 0.044 3.956 24 C 0.125 3.875 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.025 0.975 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.014 0.986 38 H 0.092 0.908 39 H 0.003 0.997 40 H -0.041 1.041 41 H 0.263 0.737 42 H 0.081 0.919 43 H 0.012 0.988 44 H 0.086 0.914 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -12.196 13.716 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.149 4.149 4 C 0.017 3.983 5 H 0.124 0.876 6 O -0.292 6.292 7 C -0.072 4.072 8 C 0.276 3.724 9 O -0.457 6.457 10 N -0.341 5.341 11 C -0.006 4.006 12 C -0.081 4.081 13 N -0.261 5.261 14 C 0.081 3.919 15 C -0.558 4.558 16 H 0.091 0.909 17 C -0.197 4.197 18 N -0.578 5.578 19 Si 0.795 3.205 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.180 1.180 23 C -0.085 4.085 24 C 0.002 3.998 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.043 0.957 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.032 0.968 38 H 0.110 0.890 39 H 0.022 0.978 40 H -0.024 1.024 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.030 0.970 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.846 -11.659 14.257 20.432 hybrid contribution 1.396 0.090 -1.159 1.816 sum -7.450 -11.568 13.099 18.998 Atomic orbital electron populations 1.21765 0.94846 1.02282 1.02049 1.21448 0.96531 0.94448 1.02911 1.21790 0.89084 1.00039 1.03963 1.22251 0.97468 0.88887 0.89698 0.87576 1.87950 1.37515 1.71937 1.31814 1.23009 0.84218 0.95751 1.04199 1.22044 0.78753 0.90057 0.81554 1.90649 1.43399 1.72182 1.39458 1.48372 1.60620 1.11856 1.13255 1.22177 0.96894 0.99341 0.82156 1.22417 0.98143 0.88336 0.99237 1.62015 1.48162 1.14048 1.01858 1.19390 0.91442 0.94182 0.86865 1.21458 1.01508 1.42302 0.90559 0.90926 1.25941 0.96485 0.95020 1.02263 1.70098 1.19272 1.46196 1.22279 0.85361 0.78364 0.78967 0.77800 1.20135 1.21317 1.18047 1.22416 0.94353 1.00580 0.91125 1.21614 0.99621 0.81783 0.96737 0.92080 0.91840 0.93083 0.90618 0.91791 0.91692 0.88431 0.95668 0.87851 0.91496 0.86685 0.88751 0.96813 0.89026 0.97844 1.02372 0.92783 0.90095 0.96971 0.89564 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.59 5.83 30.59 0.18 -1.41 16 3 C -0.11 -1.93 4.59 30.59 0.14 -1.79 16 4 C 0.08 1.71 1.68 29.85 0.05 1.76 16 5 H 0.11 1.86 6.71 -2.39 -0.02 1.85 16 6 O -0.37 -9.18 9.40 -130.05 -1.22 -10.41 16 7 C 0.02 0.47 10.81 113.37 1.23 1.70 16 8 C 0.49 14.38 7.03 87.66 0.62 14.99 16 9 O -0.58 -21.77 15.97 15.90 0.25 -21.51 16 10 N -0.61 -17.16 3.01 -817.92 -2.46 -19.62 16 11 C 0.12 2.84 5.06 86.35 0.44 3.28 16 12 C 0.05 1.62 5.46 86.39 0.47 2.09 16 13 N -0.54 -21.82 4.62 -899.80 -4.16 -25.98 16 14 C 0.21 10.70 4.72 85.55 0.40 11.10 16 15 C -0.52 -27.87 8.41 25.60 0.22 -27.65 16 16 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 17 C 0.00 0.04 5.46 84.66 0.46 0.51 16 18 N -0.94 -55.39 13.29 21.45 0.28 -55.10 16 19 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 C 0.04 1.60 5.62 86.39 0.49 2.09 16 24 C 0.13 3.83 6.61 86.35 0.57 4.40 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.47 6.06 -2.38 -0.01 1.46 16 32 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.12 2.01 5.24 -2.38 -0.01 2.00 16 36 H 0.09 2.11 8.10 -2.39 -0.02 2.09 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 3.27 6.67 -2.39 -0.02 3.25 16 39 H 0.00 0.19 7.97 -2.39 -0.02 0.18 16 40 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 41 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.08 2.89 7.99 -2.38 -0.02 2.87 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.08 2.67 7.04 -2.39 -0.02 2.65 16 Total: -1.00 -69.49 354.98 1.64 -67.85 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.94 Total: 10.59 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.97 Total: 9.91 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -6.33 Total: -100.70 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.97 Total: -31.92 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -69.49 1.64 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602203777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.851 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds