Wall clock time and date at job start Tue Mar 31 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47331 * 2 1 4 4 O 1.42902 * 109.46684 * 240.00452 * 2 1 3 5 5 C 1.52992 * 109.47448 * 120.00307 * 2 1 3 6 6 C 1.52997 * 109.47482 * 184.99813 * 5 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47139 * 120.00117 * 18 16 14 21 21 H 1.48502 * 109.47245 * 240.00289 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.09007 * 109.46964 * 300.00221 * 1 2 3 25 25 H 1.09004 * 109.47224 * 59.99716 * 1 2 3 26 26 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47314 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47198 * 300.00300 * 3 2 1 29 29 H 1.08998 * 109.47494 * 59.99981 * 3 2 1 30 30 H 0.96702 * 114.00205 * 299.99242 * 4 2 1 31 31 H 1.09002 * 109.47103 * 64.99566 * 5 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 5 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 35 35 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 36 36 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 37 37 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 38 38 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 39 39 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 40 40 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 41 41 H 0.96998 * 120.00461 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 43 43 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 44 44 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 45 45 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6134 1.3135 7 6 4.0671 -1.3233 2.5443 8 8 3.2828 -1.8629 3.2956 9 7 5.3881 -1.3594 2.8094 10 6 6.3569 -0.7178 1.9079 11 6 7.2656 0.1943 2.7472 12 7 7.8587 -0.5869 3.8409 13 6 8.8682 0.1996 4.5623 14 6 10.0298 0.4871 3.6464 15 1 10.0191 0.1225 2.6298 16 6 11.1058 1.2166 4.1058 17 7 11.1187 1.6611 5.3434 18 14 12.5454 1.5737 2.9701 19 1 12.2879 0.9679 1.6390 20 1 12.7068 3.0424 2.8223 21 1 13.7858 0.9949 3.5462 22 6 6.8268 -1.0876 4.7587 23 6 5.8995 -2.0473 4.0046 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.7209 -1.5952 -1.2330 31 1 1.7516 -1.7715 1.2054 32 1 1.6054 -0.2618 2.1368 33 1 3.8532 0.4369 1.3572 34 1 3.9994 -1.0729 0.4258 35 1 6.9565 -1.4809 1.4117 36 1 5.8265 -0.1236 1.1637 37 1 6.6795 1.0142 3.1622 38 1 8.0582 0.5962 2.1161 39 1 8.4270 1.1389 4.8954 40 1 9.2182 -0.3642 5.4270 41 1 11.8758 2.1740 5.6667 42 1 6.2467 -0.2497 5.1457 43 1 7.3010 -1.6152 5.5862 44 1 5.0667 -2.3326 4.6475 45 1 6.4561 -2.9355 3.7058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:04 Heat of formation + Delta-G solvation = -92.693987 kcal Electronic energy + Delta-G solvation = -23188.435328 eV Core-core repulsion = 19819.437127 eV Total energy + Delta-G solvation = -3368.998201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12663 -38.66693 -37.43489 -34.39422 -33.57458 -32.46112 -31.35610 -30.32569 -28.23696 -27.66371 -25.83872 -24.45690 -23.17277 -21.93513 -20.67046 -20.23662 -18.55209 -17.29735 -16.46278 -16.37120 -15.94203 -15.72467 -15.11706 -14.80514 -14.59584 -14.42373 -14.04624 -13.71387 -13.55857 -13.46836 -12.91031 -12.68116 -12.54199 -12.36224 -12.23076 -12.07122 -11.90203 -11.72967 -11.30736 -11.15846 -11.06939 -10.98479 -10.80236 -10.74904 -10.64630 -10.52080 -10.18729 -9.91744 -9.58654 -9.28608 -8.52251 -8.42889 -7.34861 -6.08426 -4.10603 2.74834 3.13876 3.27299 3.35133 3.39080 3.95450 4.36905 4.40463 4.51259 4.64569 4.77502 4.88936 5.02563 5.10695 5.26412 5.30288 5.31854 5.38778 5.45115 5.47712 5.54203 5.59223 5.64111 5.65650 5.74864 5.79855 5.85760 5.89529 5.97448 6.04108 6.06988 6.27035 6.43500 6.45450 6.69287 7.19901 7.25625 7.41363 7.57521 7.72616 7.99313 8.09891 8.29305 8.45156 8.96960 9.54211 11.02435 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003365 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.554790 B = 8318.006006 C = 9037.179461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.124 3.876 3 C -0.144 4.144 4 O -0.561 6.561 5 C -0.126 4.126 6 C -0.138 4.138 7 C 0.511 3.489 8 O -0.556 6.556 9 N -0.609 5.609 10 C 0.108 3.892 11 C 0.050 3.950 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.041 3.959 23 C 0.117 3.883 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.375 0.625 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.097 0.903 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 -3.546 -10.151 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.084 3.916 3 C -0.201 4.201 4 O -0.367 6.367 5 C -0.164 4.164 6 C -0.177 4.177 7 C 0.300 3.700 8 O -0.435 6.435 9 N -0.342 5.342 10 C -0.015 4.015 11 C -0.079 4.079 12 N -0.261 5.261 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.088 4.088 23 C -0.005 4.005 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.222 0.778 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.043 0.957 38 H 0.115 0.885 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.872 -3.539 -9.932 20.750 hybrid contribution 0.345 0.476 0.092 0.595 sum -17.527 -3.064 -9.840 20.332 Atomic orbital electron populations 1.22472 0.95726 1.02485 1.02790 1.21259 0.92529 0.93162 0.84663 1.21846 1.02400 0.93465 1.02435 1.86551 1.77274 1.28881 1.43960 1.22018 0.94359 1.01709 0.98360 1.21700 0.97120 1.02078 0.96841 1.20738 0.81751 0.80210 0.87289 1.90649 1.55000 1.47334 1.50552 1.48268 1.05854 1.54547 1.25493 1.22121 0.90534 0.96695 0.92104 1.22415 0.97017 0.93515 0.94973 1.62076 1.12271 1.40332 1.11414 1.19731 0.88782 0.90683 0.93966 1.21174 1.02079 1.32930 0.98588 0.91726 1.25000 0.98557 0.95831 0.95222 1.69965 1.31237 1.37086 1.15411 0.86441 0.82260 0.77835 0.80878 1.19597 1.21111 1.20992 1.22409 0.93322 0.97471 0.95608 1.21747 0.97162 0.95171 0.86458 0.91482 0.91822 0.92305 0.91335 0.91949 0.91078 0.77771 0.91001 0.90375 0.88672 0.88417 0.90557 0.90079 0.95712 0.88457 0.99124 0.95028 0.92906 0.95610 0.90109 0.89515 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.81 37.16 0.33 -0.92 16 2 C 0.12 1.04 1.09 -90.63 -0.10 0.94 16 3 C -0.14 -1.20 8.35 37.16 0.31 -0.89 16 4 O -0.56 -4.95 12.51 -35.23 -0.44 -5.39 16 5 C -0.13 -1.24 3.77 -26.74 -0.10 -1.34 16 6 C -0.14 -1.49 3.47 -27.88 -0.10 -1.59 16 7 C 0.51 7.47 7.71 -10.98 -0.08 7.39 16 8 O -0.56 -9.76 15.43 5.56 0.09 -9.67 16 9 N -0.61 -9.15 3.00 -172.16 -0.52 -9.67 16 10 C 0.11 1.53 6.53 -3.37 -0.02 1.51 16 11 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 12 N -0.54 -11.09 4.62 -235.44 -1.09 -12.17 16 13 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 14 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 15 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.04 0.74 5.62 -3.68 -0.02 0.72 16 23 C 0.12 1.85 6.60 -3.58 -0.02 1.82 16 24 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.59 6.35 -51.93 -0.33 0.26 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.38 2.11 9.05 45.56 0.41 2.52 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.10 0.96 5.88 -51.93 -0.31 0.66 16 34 H 0.10 0.98 7.67 -51.93 -0.40 0.58 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.91 6.02 -51.93 -0.31 0.60 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 1.85 6.67 -51.93 -0.35 1.51 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 44 H 0.09 1.36 7.06 -51.93 -0.37 1.00 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 353.42 15.07 5.33 5.33 Total: -1.00 -31.92 353.42 -8.21 -40.13 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.05 Total: 0.13 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -0.24 Total: 0.76 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.87 Total: -47.33 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.36 Total: -15.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.92 -8.21 -40.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.561 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds