Wall clock time and date at job start Tue Mar 31 2020 03:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47331 * 2 1 4 4 O 1.42902 * 109.46684 * 240.00452 * 2 1 3 5 5 C 1.52992 * 109.47448 * 120.00307 * 2 1 3 6 6 C 1.52997 * 109.47482 * 184.99813 * 5 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47139 * 120.00117 * 18 16 14 21 21 H 1.48502 * 109.47245 * 240.00289 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.09007 * 109.46964 * 300.00221 * 1 2 3 25 25 H 1.09004 * 109.47224 * 59.99716 * 1 2 3 26 26 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47314 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47198 * 300.00300 * 3 2 1 29 29 H 1.08998 * 109.47494 * 59.99981 * 3 2 1 30 30 H 0.96702 * 114.00205 * 299.99242 * 4 2 1 31 31 H 1.09002 * 109.47103 * 64.99566 * 5 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 5 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 35 35 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 36 36 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 37 37 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 38 38 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 39 39 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 40 40 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 41 41 H 0.96998 * 120.00461 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 43 43 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 44 44 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 45 45 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2491 6 6 3.5648 -0.6134 1.3135 7 6 4.0671 -1.3233 2.5443 8 8 3.2828 -1.8629 3.2956 9 7 5.3881 -1.3594 2.8094 10 6 6.3569 -0.7178 1.9079 11 6 7.2656 0.1943 2.7472 12 7 7.8587 -0.5869 3.8409 13 6 8.8682 0.1996 4.5623 14 6 10.0298 0.4871 3.6464 15 1 10.0191 0.1225 2.6298 16 6 11.1058 1.2166 4.1058 17 7 11.1187 1.6611 5.3434 18 14 12.5454 1.5737 2.9701 19 1 12.2879 0.9679 1.6390 20 1 12.7068 3.0424 2.8223 21 1 13.7858 0.9949 3.5462 22 6 6.8268 -1.0876 4.7587 23 6 5.8995 -2.0473 4.0046 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.7209 -1.5952 -1.2330 31 1 1.7516 -1.7715 1.2054 32 1 1.6054 -0.2618 2.1368 33 1 3.8532 0.4369 1.3572 34 1 3.9994 -1.0729 0.4258 35 1 6.9565 -1.4809 1.4117 36 1 5.8265 -0.1236 1.1637 37 1 6.6795 1.0142 3.1622 38 1 8.0582 0.5962 2.1161 39 1 8.4270 1.1389 4.8954 40 1 9.2182 -0.3642 5.4270 41 1 11.8758 2.1740 5.6667 42 1 6.2467 -0.2497 5.1457 43 1 7.3010 -1.6152 5.5862 44 1 5.0667 -2.3326 4.6475 45 1 6.4561 -2.9355 3.7058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:03 Heat of formation + Delta-G solvation = -116.082949 kcal Electronic energy + Delta-G solvation = -23189.449550 eV Core-core repulsion = 19819.437127 eV Total energy + Delta-G solvation = -3370.012423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30317 -39.52158 -38.76312 -35.96685 -34.49533 -34.22774 -32.48567 -31.36642 -29.94711 -28.25480 -27.42925 -25.58654 -24.57060 -23.63987 -21.95753 -21.05056 -19.78502 -18.49702 -18.37340 -17.20698 -16.99330 -16.82490 -16.62908 -16.02643 -15.94888 -15.53086 -15.45652 -15.26399 -14.75837 -14.42742 -14.18775 -13.87361 -13.74021 -13.49415 -13.14618 -13.05893 -12.87956 -12.77271 -12.71150 -12.61050 -12.47464 -12.37843 -12.24783 -12.10711 -11.94529 -11.77423 -11.46535 -11.27204 -10.90934 -10.72032 -10.62861 -9.76592 -9.07192 -8.20509 -6.30981 1.43365 1.44434 1.57618 1.60016 1.97666 2.41232 3.12120 3.21897 3.34059 3.49961 3.81347 3.92638 4.00763 4.03580 4.09482 4.22092 4.27399 4.29921 4.40278 4.44325 4.53496 4.68222 4.72485 4.76630 4.83569 4.87832 4.93369 4.95491 5.01251 5.04306 5.12037 5.18345 5.20707 5.23462 5.30598 5.41868 5.46027 5.64067 6.01860 6.22563 6.43967 6.55192 6.85382 6.92687 7.12710 7.39343 8.91148 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003365 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.554790 B = 8318.006006 C = 9037.179461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.130 3.870 3 C -0.149 4.149 4 O -0.573 6.573 5 C -0.121 4.121 6 C -0.131 4.131 7 C 0.509 3.491 8 O -0.587 6.587 9 N -0.614 5.614 10 C 0.120 3.880 11 C 0.049 3.951 12 N -0.539 5.539 13 C 0.208 3.792 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.000 4.000 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.044 3.956 23 C 0.126 3.874 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.388 0.612 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.015 0.985 38 H 0.087 0.913 39 H -0.041 1.041 40 H 0.004 0.996 41 H 0.264 0.736 42 H 0.014 0.986 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.560 -3.813 -12.617 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.089 3.911 3 C -0.206 4.206 4 O -0.381 6.381 5 C -0.159 4.159 6 C -0.170 4.170 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.346 5.346 10 C -0.002 4.002 11 C -0.080 4.080 12 N -0.264 5.264 13 C 0.082 3.918 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.198 4.198 17 N -0.578 5.578 18 Si 0.796 3.204 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.085 4.085 23 C 0.003 3.997 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.135 0.865 37 H 0.034 0.966 38 H 0.105 0.895 39 H -0.024 1.024 40 H 0.022 0.978 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.365 -3.824 -12.424 22.501 hybrid contribution 0.436 0.542 0.908 1.144 sum -17.930 -3.282 -11.516 21.561 Atomic orbital electron populations 1.22449 0.94776 1.03049 1.03021 1.21191 0.93205 0.92874 0.83805 1.21903 1.02245 0.93591 1.02870 1.86522 1.77568 1.30098 1.43894 1.21978 0.93583 1.01626 0.98738 1.21744 0.97790 1.02200 0.95253 1.21405 0.81056 0.79586 0.87934 1.90638 1.55621 1.48698 1.51904 1.48372 1.06424 1.54518 1.25298 1.22110 0.90040 0.96518 0.91532 1.22474 0.97239 0.94086 0.94233 1.62012 1.12860 1.39654 1.11886 1.19378 0.89816 0.89270 0.93346 1.21487 1.02594 1.32775 0.98949 0.91131 1.25949 1.01591 0.95546 0.96726 1.70101 1.32301 1.37945 1.17442 0.85303 0.78246 0.77732 0.79151 1.18120 1.20622 1.20778 1.22433 0.92911 0.97489 0.95695 1.21586 0.96591 0.94681 0.86857 0.91287 0.91549 0.91637 0.91613 0.91780 0.90494 0.76251 0.91370 0.91456 0.87513 0.86765 0.89615 0.86483 0.96631 0.89478 1.02357 0.97830 0.92743 0.96804 0.90206 0.89413 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.81 71.98 0.63 -1.48 16 2 C 0.13 1.87 1.09 -10.80 -0.01 1.86 16 3 C -0.15 -2.15 8.35 71.98 0.60 -1.55 16 4 O -0.57 -8.59 12.51 -148.98 -1.86 -10.45 16 5 C -0.12 -2.13 3.77 30.59 0.12 -2.01 16 6 C -0.13 -2.48 3.47 29.85 0.10 -2.38 16 7 C 0.51 13.95 7.71 87.66 0.68 14.63 16 8 O -0.59 -19.98 15.43 -3.03 -0.05 -20.03 16 9 N -0.61 -17.35 3.00 -816.99 -2.45 -19.80 16 10 C 0.12 3.10 6.53 86.50 0.57 3.66 16 11 C 0.05 1.71 5.47 86.54 0.47 2.19 16 12 N -0.54 -22.52 4.62 -898.81 -4.15 -26.67 16 13 C 0.21 10.91 4.72 85.56 0.40 11.32 16 14 C -0.52 -28.41 8.41 25.60 0.22 -28.20 16 15 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 17 N -0.94 -55.87 13.29 21.44 0.28 -55.58 16 18 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.04 1.60 5.62 86.40 0.49 2.09 16 23 C 0.13 3.86 6.60 86.36 0.57 4.43 16 24 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.97 6.35 -2.39 -0.02 0.96 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.39 3.37 9.05 -74.06 -0.67 2.70 16 31 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.11 1.83 5.88 -2.39 -0.01 1.82 16 34 H 0.11 1.86 7.67 -2.39 -0.02 1.84 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.12 2.20 6.02 -2.39 -0.01 2.19 16 37 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.09 3.26 6.67 -2.39 -0.02 3.24 16 39 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 40 H 0.00 0.20 7.97 -2.39 -0.02 0.19 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.08 2.88 7.99 -2.39 -0.02 2.86 16 44 H 0.09 2.71 7.06 -2.39 -0.02 2.69 16 45 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -69.12 353.42 -0.62 -69.73 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.29 Total: 12.79 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.29 Total: 5.00 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -6.32 Total: -102.06 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.91 Total: -30.48 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -69.12 -0.62 -69.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.348 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds