Wall clock time and date at job start Tue Mar 31 2020 02:45:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34228 * 117.00160 * 2 1
4 4 O 1.20819 * 119.99879 * 0.02562 * 3 2 1
5 5 C 1.50699 * 120.00082 * 180.02562 * 3 2 1
6 6 H 1.09001 * 108.66929 * 345.02135 * 5 3 2
7 7 C 1.45866 * 108.79220 * 103.31783 * 5 3 2
8 8 C 1.54503 * 111.59746 * 182.20549 * 7 5 3
9 9 C 1.50464 * 108.84962 * 282.80065 * 8 7 5
10 10 C 1.54289 * 113.02694 * 92.16069 * 9 8 7
11 11 C 1.54070 * 112.28983 * 318.30452 * 10 9 8
12 12 N 1.44274 * 111.98216 * 318.90981 * 11 10 9
13 13 C 1.46892 * 111.00182 * 219.31091 * 12 11 10
14 14 C 1.50701 * 109.47629 * 301.81682 * 13 12 11
15 15 O 1.21296 * 119.99382 * 3.53093 * 14 13 12
16 16 N 1.34768 * 120.00410 * 183.53588 * 14 13 12
17 17 C 1.37103 * 119.99986 * 179.97438 * 16 14 13
18 18 H 1.08000 * 120.00133 * 0.02562 * 17 16 14
19 19 C 1.38953 * 119.99952 * 180.02562 * 17 16 14
20 20 N 1.31417 * 120.00015 * 0.02562 * 19 17 16
21 21 Si 1.86802 * 119.99923 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47196 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.46969 * 119.99850 * 21 19 17
24 24 H 1.48502 * 109.46791 * 239.99974 * 21 19 17
25 25 H 1.08991 * 109.47273 * 59.99426 * 1 2 3
26 26 H 1.09007 * 109.47098 * 179.97438 * 1 2 3
27 27 H 1.08995 * 109.46760 * 299.99394 * 1 2 3
28 28 H 1.08995 * 109.06029 * 302.75788 * 7 5 3
29 29 H 1.09004 * 109.04803 * 61.74223 * 7 5 3
30 30 H 1.09003 * 109.57475 * 42.61382 * 8 7 5
31 31 H 1.09000 * 109.57408 * 162.98755 * 8 7 5
32 32 H 1.08996 * 108.76784 * 213.07341 * 9 8 7
33 33 H 1.08997 * 108.76968 * 331.24600 * 9 8 7
34 34 H 1.08999 * 108.92072 * 79.02929 * 10 9 8
35 35 H 1.08997 * 108.91616 * 197.67159 * 10 9 8
36 36 H 1.08998 * 108.97709 * 79.55673 * 11 10 9
37 37 H 1.08998 * 108.97865 * 198.35432 * 11 10 9
38 38 H 1.09002 * 109.47042 * 61.81582 * 13 12 11
39 39 H 1.08998 * 109.47294 * 181.81027 * 13 12 11
40 40 H 0.96996 * 120.00318 * 0.02562 * 16 14 13
41 41 H 0.97001 * 119.99803 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2092 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9671 0.2968 0.2660
7 6 4.0184 1.6173 -1.3445
8 6 5.5603 1.6618 -1.4317
9 6 6.0452 2.9467 -0.8170
10 6 6.3802 2.8094 0.6829
11 6 5.3398 1.9608 1.4387
12 7 3.9921 2.2577 1.0178
13 6 3.0718 2.2616 2.1628
14 6 3.1180 0.9207 2.8491
15 8 3.8924 0.0695 2.4655
16 7 2.2989 0.6673 3.8888
17 6 2.3406 -0.5528 4.5128
18 1 3.0301 -1.3107 4.1714
19 6 1.4957 -0.8143 5.5845
20 7 0.6563 0.1078 5.9997
21 14 1.5530 -2.4764 6.4352
22 1 2.5755 -3.3320 5.7814
23 1 1.9051 -2.2885 7.8655
24 1 0.2234 -3.1300 6.3344
25 1 -0.3633 0.5139 -0.8898
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5137 0.8900
28 1 3.6435 0.8728 -2.0467
29 1 3.6194 2.5948 -1.6157
30 1 5.9814 0.8155 -0.8889
31 1 5.8684 1.6176 -2.4763
32 1 6.9393 3.2738 -1.3476
33 1 5.2722 3.7059 -0.9357
34 1 7.3593 2.3415 0.7849
35 1 6.4155 3.8031 1.1294
36 1 5.5436 0.9056 1.2571
37 1 5.4283 2.1600 2.5067
38 1 3.3695 3.0398 2.8655
39 1 2.0579 2.4562 1.8133
40 1 1.6793 1.3478 4.1953
41 1 0.0662 -0.0749 6.7476
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000611578588.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:45:47
Heat of formation + Delta-G solvation = -110.400956 kcal
Electronic energy + Delta-G solvation = -24437.343832 eV
Core-core repulsion = 20931.744705 eV
Total energy + Delta-G solvation = -3505.599127 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.157 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.95447 -38.94720 -37.54102 -36.10628 -34.40405 -33.47937 -32.54496 -31.32861
-28.48751 -27.60458 -25.57217 -25.10185 -23.81474 -21.76857 -20.16558 -19.74863
-18.98108 -17.92145 -17.46661 -16.63644 -16.24608 -16.03173 -15.25939 -14.89505
-14.57998 -14.29156 -14.11957 -14.00618 -13.54665 -13.20223 -12.96403 -12.89014
-12.43398 -12.31677 -11.93736 -11.68024 -11.55826 -11.31419 -11.19581 -10.98870
-10.81234 -10.50554 -10.40725 -10.38351 -10.28799 -10.28321 -10.10260 -9.80699
-9.54856 -9.18505 -8.03277 -7.64012 -6.47354 -3.88495 2.42724 2.97638
3.11303 3.22632 3.29597 3.81520 4.09010 4.14756 4.81689 4.92820
5.05701 5.16420 5.19819 5.21833 5.32745 5.37746 5.45749 5.52948
5.57214 5.66171 5.70139 5.79271 5.90326 6.03042 6.07625 6.15009
6.17702 6.25431 6.29467 6.33873 6.35988 6.55073 6.62061 6.68454
7.16202 7.37453 7.49483 7.98037 8.07107 8.52371 9.10293 9.46239
9.95913 10.69366
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.019721 B = 0.005726 C = 0.004960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1419.469229 B = 4888.910506 C = 5643.472874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.349 6.349
3 C 0.467 3.533
4 O -0.504 6.504
5 C 0.094 3.906
6 H 0.098 0.902
7 C -0.110 4.110
8 C -0.110 4.110
9 C -0.111 4.111
10 C -0.111 4.111
11 C 0.057 3.943
12 N -0.480 5.480
13 C 0.013 3.987
14 C 0.403 3.597
15 O -0.594 6.594
16 N -0.554 5.554
17 C -0.299 4.299
18 H 0.104 0.896
19 C 0.024 3.976
20 N -0.898 5.898
21 Si 0.929 3.071
22 H -0.268 1.268
23 H -0.281 1.281
24 H -0.281 1.281
25 H 0.058 0.942
26 H 0.099 0.901
27 H 0.065 0.935
28 H 0.067 0.933
29 H 0.076 0.924
30 H 0.067 0.933
31 H 0.064 0.936
32 H 0.050 0.950
33 H 0.067 0.933
34 H 0.058 0.942
35 H 0.058 0.942
36 H 0.067 0.933
37 H 0.065 0.935
38 H 0.096 0.904
39 H 0.105 0.895
40 H 0.392 0.608
41 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.580 3.770 -12.088 13.465
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.264 6.264
3 C 0.310 3.690
4 O -0.392 6.392
5 C -0.014 4.014
6 H 0.116 0.884
7 C -0.148 4.148
8 C -0.147 4.147
9 C -0.148 4.148
10 C -0.149 4.149
11 C -0.071 4.071
12 N -0.205 5.205
13 C -0.118 4.118
14 C 0.188 3.812
15 O -0.481 6.481
16 N -0.189 5.189
17 C -0.429 4.429
18 H 0.122 0.878
19 C -0.179 4.179
20 N -0.539 5.539
21 Si 0.756 3.244
22 H -0.192 1.192
23 H -0.207 1.207
24 H -0.207 1.207
25 H 0.077 0.923
26 H 0.117 0.883
27 H 0.084 0.916
28 H 0.086 0.914
29 H 0.094 0.906
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.069 0.931
33 H 0.086 0.914
34 H 0.076 0.924
35 H 0.076 0.924
36 H 0.085 0.915
37 H 0.083 0.917
38 H 0.114 0.886
39 H 0.123 0.877
40 H 0.226 0.774
41 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 4.700 3.961 -12.398 13.838
hybrid contribution -0.800 -1.112 1.293 1.883
sum 3.900 2.849 -11.105 12.110
Atomic orbital electron populations
1.23235 0.76679 1.03638 1.02199 1.86593 1.23158 1.33338 1.83294
1.23877 0.92266 0.81380 0.71504 1.90587 1.67222 1.36285 1.45080
1.20379 0.86708 0.98851 0.95488 0.88420 1.20587 0.97244 1.02925
0.94069 1.21276 0.93956 0.99019 1.00461 1.21211 1.00559 0.97842
0.95211 1.22017 0.97615 1.00133 0.95155 1.21921 0.87036 0.99577
0.98570 1.62110 1.02567 1.45916 1.09895 1.22701 0.99641 0.96690
0.92807 1.20972 0.85334 0.90427 0.84467 1.90478 1.42015 1.48469
1.67124 1.41988 1.33859 1.15342 1.27687 1.19764 1.20078 0.91741
1.11297 0.87838 1.25297 0.95838 0.99424 0.97297 1.69629 1.22788
1.33929 1.27507 0.85809 0.78213 0.81492 0.78889 1.19205 1.20684
1.20700 0.92345 0.88277 0.91647 0.91396 0.90551 0.91465 0.91764
0.93144 0.91442 0.92378 0.92356 0.91511 0.91679 0.88615 0.87694
0.77447 0.91811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.55 10.56 101.05 1.07 1.61 16
2 O -0.35 -6.47 10.56 -39.25 -0.41 -6.88 16
3 C 0.47 8.68 4.85 36.01 0.17 8.86 16
4 O -0.50 -9.88 14.64 -18.75 -0.27 -10.16 16
5 C 0.09 1.61 1.41 -71.74 -0.10 1.51 16
6 H 0.10 1.88 5.87 -51.93 -0.30 1.58 16
7 C -0.11 -1.50 4.69 -29.32 -0.14 -1.64 16
8 C -0.11 -1.28 5.60 -27.21 -0.15 -1.43 16
9 C -0.11 -1.29 5.42 -27.32 -0.15 -1.43 16
10 C -0.11 -1.42 6.14 -25.50 -0.16 -1.58 16
11 C 0.06 0.94 3.78 -4.67 -0.02 0.93 16
12 N -0.48 -8.32 4.34 -234.31 -1.02 -9.34 16
13 C 0.01 0.25 5.10 -4.98 -0.03 0.22 16
14 C 0.40 9.40 6.54 -10.99 -0.07 9.32 16
15 O -0.59 -15.01 11.97 5.54 0.07 -14.94 16
16 N -0.55 -14.06 5.29 -10.96 -0.06 -14.12 16
17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16
18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16
19 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16
20 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16
21 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16
22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
25 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16
26 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
27 H 0.06 1.06 8.13 -51.93 -0.42 0.63 16
28 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16
29 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16
30 H 0.07 0.83 7.15 -51.93 -0.37 0.46 16
31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16
34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.07 1.22 5.48 -51.93 -0.28 0.93 16
37 H 0.06 1.15 7.33 -51.93 -0.38 0.77 16
38 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16
39 H 0.11 2.11 5.12 -51.93 -0.27 1.85 16
40 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16
41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16
LS Contribution 322.44 15.07 4.86 4.86
Total: -1.00 -30.41 322.44 -6.97 -37.38
By element:
Atomic # 1 Polarization: 18.48 SS G_CDS: -6.02 Total: 12.46 kcal
Atomic # 6 Polarization: 8.33 SS G_CDS: 0.19 Total: 8.52 kcal
Atomic # 7 Polarization: -46.73 SS G_CDS: -0.35 Total: -47.08 kcal
Atomic # 8 Polarization: -31.36 SS G_CDS: -0.62 Total: -31.98 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -30.41 -6.97 -37.38 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611578588.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.023 kcal
(2) G-P(sol) polarization free energy of solvation -30.413 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.401 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds