Wall clock time and date at job start Tue Mar 31 2020 02:45:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34228 * 117.00160 * 2 1
4 4 O 1.20819 * 119.99879 * 0.02562 * 3 2 1
5 5 C 1.50699 * 120.00082 * 180.02562 * 3 2 1
6 6 H 1.09001 * 108.66929 * 345.02135 * 5 3 2
7 7 C 1.45866 * 108.79220 * 103.31783 * 5 3 2
8 8 C 1.54503 * 111.59746 * 182.20549 * 7 5 3
9 9 C 1.50464 * 108.84962 * 282.80065 * 8 7 5
10 10 C 1.54289 * 113.02694 * 92.16069 * 9 8 7
11 11 C 1.54070 * 112.28983 * 318.30452 * 10 9 8
12 12 N 1.44274 * 111.98216 * 318.90981 * 11 10 9
13 13 C 1.46892 * 111.00182 * 219.31091 * 12 11 10
14 14 C 1.50701 * 109.47629 * 301.81682 * 13 12 11
15 15 O 1.21296 * 119.99382 * 3.53093 * 14 13 12
16 16 N 1.34768 * 120.00410 * 183.53588 * 14 13 12
17 17 C 1.37103 * 119.99986 * 179.97438 * 16 14 13
18 18 H 1.08000 * 120.00133 * 0.02562 * 17 16 14
19 19 C 1.38953 * 119.99952 * 180.02562 * 17 16 14
20 20 N 1.31417 * 120.00015 * 0.02562 * 19 17 16
21 21 Si 1.86802 * 119.99923 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47196 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.46969 * 119.99850 * 21 19 17
24 24 H 1.48502 * 109.46791 * 239.99974 * 21 19 17
25 25 H 1.08991 * 109.47273 * 59.99426 * 1 2 3
26 26 H 1.09007 * 109.47098 * 179.97438 * 1 2 3
27 27 H 1.08995 * 109.46760 * 299.99394 * 1 2 3
28 28 H 1.08995 * 109.06029 * 302.75788 * 7 5 3
29 29 H 1.09004 * 109.04803 * 61.74223 * 7 5 3
30 30 H 1.09003 * 109.57475 * 42.61382 * 8 7 5
31 31 H 1.09000 * 109.57408 * 162.98755 * 8 7 5
32 32 H 1.08996 * 108.76784 * 213.07341 * 9 8 7
33 33 H 1.08997 * 108.76968 * 331.24600 * 9 8 7
34 34 H 1.08999 * 108.92072 * 79.02929 * 10 9 8
35 35 H 1.08997 * 108.91616 * 197.67159 * 10 9 8
36 36 H 1.08998 * 108.97709 * 79.55673 * 11 10 9
37 37 H 1.08998 * 108.97865 * 198.35432 * 11 10 9
38 38 H 1.09002 * 109.47042 * 61.81582 * 13 12 11
39 39 H 1.08998 * 109.47294 * 181.81027 * 13 12 11
40 40 H 0.96996 * 120.00318 * 0.02562 * 16 14 13
41 41 H 0.97001 * 119.99803 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2092 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 3.9671 0.2968 0.2660
7 6 4.0184 1.6173 -1.3445
8 6 5.5603 1.6618 -1.4317
9 6 6.0452 2.9467 -0.8170
10 6 6.3802 2.8094 0.6829
11 6 5.3398 1.9608 1.4387
12 7 3.9921 2.2577 1.0178
13 6 3.0718 2.2616 2.1628
14 6 3.1180 0.9207 2.8491
15 8 3.8924 0.0695 2.4655
16 7 2.2989 0.6673 3.8888
17 6 2.3406 -0.5528 4.5128
18 1 3.0301 -1.3107 4.1714
19 6 1.4957 -0.8143 5.5845
20 7 0.6563 0.1078 5.9997
21 14 1.5530 -2.4764 6.4352
22 1 2.5755 -3.3320 5.7814
23 1 1.9051 -2.2885 7.8655
24 1 0.2234 -3.1300 6.3344
25 1 -0.3633 0.5139 -0.8898
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3633 0.5137 0.8900
28 1 3.6435 0.8728 -2.0467
29 1 3.6194 2.5948 -1.6157
30 1 5.9814 0.8155 -0.8889
31 1 5.8684 1.6176 -2.4763
32 1 6.9393 3.2738 -1.3476
33 1 5.2722 3.7059 -0.9357
34 1 7.3593 2.3415 0.7849
35 1 6.4155 3.8031 1.1294
36 1 5.5436 0.9056 1.2571
37 1 5.4283 2.1600 2.5067
38 1 3.3695 3.0398 2.8655
39 1 2.0579 2.4562 1.8133
40 1 1.6793 1.3478 4.1953
41 1 0.0662 -0.0749 6.7476
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000611578588.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:45:46
Heat of formation + Delta-G solvation = -131.283248 kcal
Electronic energy + Delta-G solvation = -24438.249356 eV
Core-core repulsion = 20931.744705 eV
Total energy + Delta-G solvation = -3506.504652 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 284.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.41422 -40.54206 -39.12383 -37.54166 -36.16663 -35.02311 -33.74492 -33.35473
-29.92643 -28.93279 -27.18579 -26.40932 -25.40941 -23.04196 -21.71392 -21.10611
-20.52557 -19.81875 -18.94034 -18.07989 -17.86682 -17.60876 -16.59672 -16.57267
-16.18457 -15.77687 -15.65715 -15.39450 -15.08023 -14.55902 -14.46243 -14.27762
-13.77182 -13.63460 -13.54103 -13.24555 -13.01676 -12.84916 -12.58274 -12.46128
-12.36610 -12.15196 -12.03046 -11.79483 -11.59264 -11.49404 -11.36961 -11.29198
-11.07338 -10.93643 -10.06581 -9.27357 -8.50355 -6.00375 0.95336 1.32461
1.38691 1.52855 1.64330 1.94379 2.25436 2.71566 3.11569 3.15616
3.59074 3.90987 3.99297 4.11375 4.15350 4.18252 4.23953 4.24742
4.32111 4.38835 4.45658 4.50282 4.54158 4.59414 4.75108 4.93223
5.00600 5.13212 5.22924 5.25008 5.30071 5.36530 5.39671 5.47334
5.58197 5.70866 5.92372 5.98876 6.50472 6.62344 7.05379 7.45956
7.98766 8.66004
Molecular weight = 284.16amu
Principal moments of inertia in cm(-1)
A = 0.019721 B = 0.005726 C = 0.004960
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1419.469229 B = 4888.910506 C = 5643.472874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.367 6.367
3 C 0.462 3.538
4 O -0.518 6.518
5 C 0.098 3.902
6 H 0.073 0.927
7 C -0.110 4.110
8 C -0.105 4.105
9 C -0.109 4.109
10 C -0.105 4.105
11 C 0.059 3.941
12 N -0.470 5.470
13 C 0.021 3.979
14 C 0.407 3.593
15 O -0.614 6.614
16 N -0.566 5.566
17 C -0.329 4.329
18 H 0.081 0.919
19 C -0.012 4.012
20 N -0.920 5.920
21 Si 0.993 3.007
22 H -0.272 1.272
23 H -0.271 1.271
24 H -0.271 1.271
25 H 0.080 0.920
26 H 0.124 0.876
27 H 0.047 0.953
28 H 0.081 0.919
29 H 0.077 0.923
30 H 0.057 0.943
31 H 0.093 0.907
32 H 0.077 0.923
33 H 0.060 0.940
34 H 0.072 0.928
35 H 0.066 0.934
36 H 0.044 0.956
37 H 0.047 0.953
38 H 0.114 0.886
39 H 0.101 0.899
40 H 0.392 0.608
41 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.221 4.024 -13.095 14.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.282 6.282
3 C 0.306 3.694
4 O -0.407 6.407
5 C -0.010 4.010
6 H 0.090 0.910
7 C -0.148 4.148
8 C -0.143 4.143
9 C -0.146 4.146
10 C -0.143 4.143
11 C -0.069 4.069
12 N -0.194 5.194
13 C -0.110 4.110
14 C 0.194 3.806
15 O -0.501 6.501
16 N -0.202 5.202
17 C -0.459 4.459
18 H 0.099 0.901
19 C -0.212 4.212
20 N -0.560 5.560
21 Si 0.817 3.183
22 H -0.196 1.196
23 H -0.196 1.196
24 H -0.196 1.196
25 H 0.098 0.902
26 H 0.142 0.858
27 H 0.066 0.934
28 H 0.099 0.901
29 H 0.096 0.904
30 H 0.076 0.924
31 H 0.111 0.889
32 H 0.096 0.904
33 H 0.079 0.921
34 H 0.091 0.909
35 H 0.085 0.915
36 H 0.063 0.937
37 H 0.066 0.934
38 H 0.132 0.868
39 H 0.119 0.881
40 H 0.226 0.774
41 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 5.344 4.227 -13.418 15.049
hybrid contribution -1.008 -1.194 1.569 2.214
sum 4.337 3.033 -11.850 12.978
Atomic orbital electron populations
1.23498 0.74972 1.05445 1.02391 1.86581 1.25057 1.33488 1.83122
1.24211 0.92882 0.81242 0.71056 1.90567 1.67629 1.36583 1.45898
1.20516 0.85810 0.97557 0.97144 0.90959 1.20647 0.98954 1.03278
0.91875 1.21298 0.92098 0.98698 1.02189 1.21215 1.01583 0.97555
0.94273 1.21984 0.96698 0.99763 0.95827 1.21952 0.87403 0.99228
0.98321 1.62308 1.02591 1.45699 1.08851 1.22680 1.00224 0.94565
0.93556 1.21732 0.83901 0.91537 0.83474 1.90470 1.42525 1.49699
1.67426 1.42060 1.34649 1.14954 1.28533 1.19700 1.20960 0.92408
1.12795 0.90064 1.26082 0.94995 1.02848 0.97283 1.69696 1.23030
1.35431 1.27877 0.84864 0.78367 0.77148 0.77924 1.19642 1.19606
1.19571 0.90180 0.85796 0.93382 0.90055 0.90404 0.92446 0.88857
0.90446 0.92112 0.90888 0.91522 0.93721 0.93424 0.86790 0.88117
0.77447 0.91241
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.89 10.56 113.37 1.20 2.09 16
2 O -0.37 -13.74 10.56 -51.40 -0.54 -14.28 16
3 C 0.46 17.27 4.85 71.24 0.35 17.62 16
4 O -0.52 -20.26 14.64 21.98 0.32 -19.93 16
5 C 0.10 3.36 1.41 41.81 0.06 3.42 16
6 H 0.07 2.86 5.87 -2.39 -0.01 2.84 16
7 C -0.11 -2.82 4.69 28.92 0.14 -2.69 16
8 C -0.11 -2.20 5.60 30.28 0.17 -2.03 16
9 C -0.11 -2.21 5.42 30.21 0.16 -2.05 16
10 C -0.10 -2.47 6.14 31.39 0.19 -2.28 16
11 C 0.06 1.94 3.78 87.16 0.33 2.27 16
12 N -0.47 -16.20 4.34 -895.23 -3.89 -20.09 16
13 C 0.02 0.83 5.10 85.56 0.44 1.27 16
14 C 0.41 19.53 6.54 87.66 0.57 20.10 16
15 O -0.61 -32.07 11.97 -3.08 -0.04 -32.10 16
16 N -0.57 -29.62 5.29 -306.98 -1.62 -31.25 16
17 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16
18 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16
19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16
20 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16
21 Si 0.99 42.78 29.55 68.60 2.03 44.81 16
22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16
24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16
25 H 0.08 2.00 8.13 -2.39 -0.02 1.98 16
26 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16
27 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16
28 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16
29 H 0.08 2.01 7.58 -2.39 -0.02 1.99 16
30 H 0.06 1.33 7.15 -2.39 -0.02 1.32 16
31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.06 1.35 7.38 -2.39 -0.02 1.33 16
34 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16
35 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16
36 H 0.04 1.66 5.48 -2.39 -0.01 1.65 16
37 H 0.05 1.70 7.33 -2.39 -0.02 1.68 16
38 H 0.11 4.02 8.09 -2.39 -0.02 4.01 16
39 H 0.10 4.10 5.12 -2.39 -0.01 4.09 16
40 H 0.39 20.15 7.90 -92.71 -0.73 19.42 16
41 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16
Total: -1.00 -66.12 322.44 1.74 -64.38
By element:
Atomic # 1 Polarization: 38.16 SS G_CDS: 0.31 Total: 38.47 kcal
Atomic # 6 Polarization: 14.85 SS G_CDS: 4.88 Total: 19.73 kcal
Atomic # 7 Polarization: -95.84 SS G_CDS: -5.23 Total: -101.07 kcal
Atomic # 8 Polarization: -66.06 SS G_CDS: -0.26 Total: -66.32 kcal
Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal
Total: -66.12 1.74 -64.38 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611578588.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.902 kcal
(2) G-P(sol) polarization free energy of solvation -66.118 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.020 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds