Wall clock time and date at job start Tue Mar 31 2020 03:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99741 * 2 1 4 4 H 1.09001 * 109.47383 * 330.42380 * 3 2 1 5 5 C 1.50705 * 109.47352 * 90.42038 * 3 2 1 6 6 O 1.21277 * 119.99738 * 4.99924 * 5 3 2 7 7 N 1.34778 * 120.00056 * 184.99762 * 5 3 2 8 8 C 1.46497 * 119.99621 * 179.97438 * 7 5 3 9 9 C 1.53070 * 109.45274 * 84.79335 * 8 7 5 10 10 C 1.53193 * 109.29574 * 181.23819 * 9 8 7 11 11 N 1.46925 * 108.89332 * 305.57664 * 10 9 8 12 12 C 1.36936 * 120.63046 * 233.51345 * 11 10 9 13 13 H 1.07999 * 120.00124 * 151.51230 * 12 11 10 14 14 C 1.38809 * 119.99920 * 331.51014 * 12 11 10 15 15 N 1.31628 * 119.99720 * 159.99503 * 14 12 11 16 16 Si 1.86799 * 120.00284 * 339.99604 * 14 12 11 17 17 H 1.48499 * 109.47231 * 90.07684 * 16 14 12 18 18 H 1.48503 * 109.46930 * 210.07733 * 16 14 12 19 19 H 1.48503 * 109.47046 * 330.07324 * 16 14 12 20 20 C 1.46929 * 118.73939 * 53.53812 * 11 10 9 21 21 C 1.53048 * 109.45595 * 205.00234 * 8 7 5 22 22 C 1.52999 * 109.47188 * 210.42104 * 3 2 1 23 23 C 1.53006 * 109.47276 * 302.72721 * 22 3 2 24 24 C 1.53005 * 109.47032 * 62.72525 * 22 3 2 25 25 H 1.09001 * 109.46847 * 175.55823 * 1 2 3 26 26 H 1.08999 * 109.47044 * 295.55547 * 1 2 3 27 27 H 1.08998 * 109.47084 * 55.55593 * 1 2 3 28 28 H 0.96997 * 120.00074 * 0.02562 * 7 5 3 29 29 H 1.08996 * 109.46586 * 324.97451 * 8 7 5 30 30 H 1.09003 * 109.39213 * 61.36343 * 9 8 7 31 31 H 1.09002 * 109.62253 * 301.25678 * 9 8 7 32 32 H 1.09008 * 109.58644 * 185.71695 * 10 9 8 33 33 H 1.09003 * 109.58579 * 65.43897 * 10 9 8 34 34 H 0.97000 * 119.99767 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.58302 * 66.17246 * 20 11 10 36 36 H 1.08991 * 109.58873 * 186.45994 * 20 11 10 37 37 H 1.08999 * 109.49690 * 58.66586 * 21 8 7 38 38 H 1.09000 * 109.49614 * 298.56955 * 21 8 7 39 39 H 1.09000 * 109.47493 * 182.72657 * 22 3 2 40 40 H 1.08997 * 109.47027 * 179.97438 * 23 22 3 41 41 H 1.09001 * 109.47083 * 300.00472 * 23 22 3 42 42 H 1.09000 * 109.46911 * 59.99580 * 23 22 3 43 43 H 1.09004 * 109.46725 * 63.70037 * 24 22 3 44 44 H 1.09000 * 109.46879 * 183.69171 * 24 22 3 45 45 H 1.08993 * 109.46788 * 303.69725 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3415 2.0010 -0.5072 5 6 2.2240 1.7602 1.4208 6 8 1.9948 1.0037 2.3406 7 7 2.6700 3.0076 1.6693 8 6 2.8773 3.4497 3.0504 9 6 4.2659 3.0119 3.5228 10 6 4.4669 3.4490 4.9773 11 7 4.2199 4.8938 5.0784 12 6 5.1552 5.7242 5.6358 13 1 5.2169 6.7558 5.3221 14 6 6.0241 5.2401 6.6040 15 7 7.1482 5.8765 6.8569 16 14 5.5983 3.6854 7.5480 17 1 6.1406 2.5051 6.8284 18 1 6.1931 3.7529 8.9070 19 1 4.1225 3.5625 7.6592 20 6 2.9500 5.4306 4.5706 21 6 2.7670 4.9746 3.1196 22 6 3.3540 1.2655 -0.7304 23 6 4.2691 0.2394 -0.0591 24 6 3.1289 0.8696 -2.1911 25 1 -0.3633 -1.0246 -0.0796 26 1 -0.3633 0.4433 0.9271 27 1 -0.3633 0.5812 -0.8475 28 1 2.8530 3.6127 0.9336 29 1 2.1196 3.0014 3.6930 30 1 5.0254 3.4777 2.8948 31 1 4.3511 1.9274 3.4537 32 1 5.4891 3.2305 5.2866 33 1 3.7683 2.9129 5.6198 34 1 7.7552 5.5384 7.5338 35 1 2.1260 5.0559 5.1780 36 1 2.9702 6.5195 4.6139 37 1 1.7853 5.2850 2.7617 38 1 3.5405 5.4239 2.4967 39 1 3.8198 2.2501 -0.6885 40 1 5.2262 0.2107 -0.5797 41 1 4.4294 0.5214 0.9816 42 1 3.8033 -0.7451 -0.1010 43 1 2.5313 1.6346 -2.6869 44 1 4.0911 0.7772 -2.6948 45 1 2.6041 -0.0848 -2.2320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613657206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:41 Heat of formation + Delta-G solvation = -70.142522 kcal Electronic energy + Delta-G solvation = -23916.720006 eV Core-core repulsion = 20548.699710 eV Total energy + Delta-G solvation = -3368.020296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.35113 -38.33508 -37.10110 -35.18622 -34.42853 -32.16696 -30.42601 -30.26389 -28.07891 -27.29306 -26.33287 -24.68583 -22.84727 -22.08111 -21.10336 -20.02575 -19.60381 -17.55804 -17.01060 -16.75243 -16.04841 -15.63714 -15.05688 -14.67086 -14.50357 -14.21136 -14.11948 -13.78303 -13.68733 -13.42623 -12.96545 -12.86660 -12.60929 -12.35686 -12.23542 -11.97693 -11.86225 -11.77558 -11.32626 -11.08911 -11.04794 -10.93781 -10.83008 -10.62929 -10.57643 -10.16280 -10.05285 -9.89700 -9.50638 -9.22934 -8.81453 -8.59002 -6.98132 -5.95325 -3.32561 2.64246 3.09676 3.35393 3.50862 3.54841 3.60932 4.48542 4.51561 4.54374 4.68799 4.85431 4.95803 5.01882 5.13632 5.19838 5.23803 5.29666 5.38410 5.41845 5.50131 5.52395 5.62651 5.65046 5.76409 5.81863 5.84773 6.02686 6.06140 6.10540 6.14049 6.25735 6.31142 6.42815 6.55728 6.64052 6.68131 6.72140 6.82958 6.91646 7.60414 7.96647 8.31144 8.32507 8.93416 9.71765 10.09618 11.20580 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.004062 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.417890 B = 6891.997387 C = 6967.441374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.077 3.923 4 H 0.083 0.917 5 C 0.489 3.511 6 O -0.525 6.525 7 N -0.723 5.723 8 C 0.151 3.849 9 C -0.139 4.139 10 C 0.128 3.872 11 N -0.606 5.606 12 C -0.262 4.262 13 H 0.086 0.914 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.882 3.118 17 H -0.287 1.287 18 H -0.303 1.303 19 H -0.271 1.271 20 C 0.151 3.849 21 C -0.140 4.140 22 C -0.086 4.086 23 C -0.146 4.146 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.395 0.605 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -7.953 -18.577 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.015 3.985 4 H 0.100 0.900 5 C 0.274 3.726 6 O -0.401 6.401 7 N -0.376 5.376 8 C 0.047 3.953 9 C -0.180 4.180 10 C 0.002 3.998 11 N -0.330 5.330 12 C -0.390 4.390 13 H 0.103 0.897 14 C -0.174 4.174 15 N -0.551 5.551 16 Si 0.713 3.287 17 H -0.214 1.214 18 H -0.231 1.231 19 H -0.196 1.196 20 C 0.025 3.975 21 C -0.180 4.180 22 C -0.105 4.105 23 C -0.203 4.203 24 C -0.202 4.202 25 H 0.106 0.894 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.229 0.771 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.579 -8.661 -17.784 22.920 hybrid contribution -0.238 -0.339 0.292 0.507 sum -11.817 -8.999 -17.492 22.948 Atomic orbital electron populations 1.22856 0.80909 1.02950 1.00047 1.87975 1.19700 1.24895 1.94366 1.22164 0.96979 0.86738 0.92606 0.89969 1.21280 0.77337 0.82074 0.91954 1.90715 1.50156 1.53167 1.46020 1.46329 1.67505 1.14167 1.09593 1.20987 0.98056 0.94907 0.81332 1.22376 0.96100 1.00026 0.99465 1.21331 1.00236 0.85189 0.93072 1.44394 1.15671 1.02629 1.70312 1.18905 1.09006 0.95145 1.15961 0.89687 1.25292 0.96569 0.97768 0.97731 1.69832 1.09272 1.41447 1.34588 0.86979 0.78903 0.83573 0.79262 1.21447 1.23089 1.19621 1.20864 0.88169 0.98128 0.90362 1.22326 1.00930 0.93710 1.01004 1.21219 0.92836 1.00962 0.95507 1.21766 0.98491 0.99540 1.00512 1.21800 1.02004 1.02091 0.94293 0.89364 0.93684 0.94116 0.77112 0.90090 0.91633 0.92396 0.90636 0.95640 0.92737 0.95791 0.91351 0.92216 0.91342 0.89655 0.92479 0.92454 0.91538 0.92829 0.92141 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.87 101.05 1.10 1.37 16 2 O -0.35 -4.22 8.48 -55.09 -0.47 -4.69 16 3 C 0.08 0.82 2.23 -27.88 -0.06 0.76 16 4 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 5 C 0.49 6.88 5.97 -10.98 -0.07 6.82 16 6 O -0.53 -9.78 16.17 -14.30 -0.23 -10.01 16 7 N -0.72 -9.30 5.00 -53.75 -0.27 -9.57 16 8 C 0.15 2.43 2.41 -67.87 -0.16 2.26 16 9 C -0.14 -2.61 5.66 -26.60 -0.15 -2.76 16 10 C 0.13 2.89 4.20 -3.71 -0.02 2.87 16 11 N -0.61 -14.36 2.76 -172.31 -0.47 -14.83 16 12 C -0.26 -7.29 10.03 -15.06 -0.15 -7.44 16 13 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 14 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 15 N -0.91 -27.92 13.97 55.49 0.78 -27.14 16 16 Si 0.88 22.88 24.34 -169.99 -4.14 18.74 16 17 H -0.29 -7.23 6.52 56.52 0.37 -6.86 16 18 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 19 H -0.27 -6.98 6.80 56.52 0.38 -6.59 16 20 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 21 C -0.14 -2.13 5.55 -26.61 -0.15 -2.28 16 22 C -0.09 -0.80 2.75 -90.61 -0.25 -1.05 16 23 C -0.15 -1.62 8.81 37.16 0.33 -1.30 16 24 C -0.14 -1.08 9.12 37.16 0.34 -0.74 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.28 7.98 -51.93 -0.41 -0.13 16 28 H 0.40 3.86 8.33 -40.82 -0.34 3.52 16 29 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.87 4.53 -51.92 -0.24 1.63 16 33 H 0.03 0.59 7.14 -51.93 -0.37 0.22 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 0.69 7.83 -51.93 -0.41 0.28 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.77 7.30 -51.93 -0.38 0.40 16 42 H 0.07 0.79 7.61 -51.93 -0.40 0.40 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -33.46 349.90 -6.87 -40.33 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.98 Total: -0.13 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 0.64 Total: 2.03 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.03 Total: -51.55 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.70 Total: -14.70 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.14 Total: 18.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.46 -6.87 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613657206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.808 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds