Wall clock time and date at job start Tue Mar 31 2020 03:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99741 * 2 1 4 4 H 1.09001 * 109.47383 * 330.42380 * 3 2 1 5 5 C 1.50705 * 109.47352 * 90.42038 * 3 2 1 6 6 O 1.21277 * 119.99738 * 4.99924 * 5 3 2 7 7 N 1.34778 * 120.00056 * 184.99762 * 5 3 2 8 8 C 1.46497 * 119.99621 * 179.97438 * 7 5 3 9 9 C 1.53070 * 109.45274 * 84.79335 * 8 7 5 10 10 C 1.53193 * 109.29574 * 181.23819 * 9 8 7 11 11 N 1.46925 * 108.89332 * 305.57664 * 10 9 8 12 12 C 1.36936 * 120.63046 * 233.51345 * 11 10 9 13 13 H 1.07999 * 120.00124 * 151.51230 * 12 11 10 14 14 C 1.38809 * 119.99920 * 331.51014 * 12 11 10 15 15 N 1.31628 * 119.99720 * 159.99503 * 14 12 11 16 16 Si 1.86799 * 120.00284 * 339.99604 * 14 12 11 17 17 H 1.48499 * 109.47231 * 90.07684 * 16 14 12 18 18 H 1.48503 * 109.46930 * 210.07733 * 16 14 12 19 19 H 1.48503 * 109.47046 * 330.07324 * 16 14 12 20 20 C 1.46929 * 118.73939 * 53.53812 * 11 10 9 21 21 C 1.53048 * 109.45595 * 205.00234 * 8 7 5 22 22 C 1.52999 * 109.47188 * 210.42104 * 3 2 1 23 23 C 1.53006 * 109.47276 * 302.72721 * 22 3 2 24 24 C 1.53005 * 109.47032 * 62.72525 * 22 3 2 25 25 H 1.09001 * 109.46847 * 175.55823 * 1 2 3 26 26 H 1.08999 * 109.47044 * 295.55547 * 1 2 3 27 27 H 1.08998 * 109.47084 * 55.55593 * 1 2 3 28 28 H 0.96997 * 120.00074 * 0.02562 * 7 5 3 29 29 H 1.08996 * 109.46586 * 324.97451 * 8 7 5 30 30 H 1.09003 * 109.39213 * 61.36343 * 9 8 7 31 31 H 1.09002 * 109.62253 * 301.25678 * 9 8 7 32 32 H 1.09008 * 109.58644 * 185.71695 * 10 9 8 33 33 H 1.09003 * 109.58579 * 65.43897 * 10 9 8 34 34 H 0.97000 * 119.99767 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.58302 * 66.17246 * 20 11 10 36 36 H 1.08991 * 109.58873 * 186.45994 * 20 11 10 37 37 H 1.08999 * 109.49690 * 58.66586 * 21 8 7 38 38 H 1.09000 * 109.49614 * 298.56955 * 21 8 7 39 39 H 1.09000 * 109.47493 * 182.72657 * 22 3 2 40 40 H 1.08997 * 109.47027 * 179.97438 * 23 22 3 41 41 H 1.09001 * 109.47083 * 300.00472 * 23 22 3 42 42 H 1.09000 * 109.46911 * 59.99580 * 23 22 3 43 43 H 1.09004 * 109.46725 * 63.70037 * 24 22 3 44 44 H 1.09000 * 109.46879 * 183.69171 * 24 22 3 45 45 H 1.08993 * 109.46788 * 303.69725 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3415 2.0010 -0.5072 5 6 2.2240 1.7602 1.4208 6 8 1.9948 1.0037 2.3406 7 7 2.6700 3.0076 1.6693 8 6 2.8773 3.4497 3.0504 9 6 4.2659 3.0119 3.5228 10 6 4.4669 3.4490 4.9773 11 7 4.2199 4.8938 5.0784 12 6 5.1552 5.7242 5.6358 13 1 5.2169 6.7558 5.3221 14 6 6.0241 5.2401 6.6040 15 7 7.1482 5.8765 6.8569 16 14 5.5983 3.6854 7.5480 17 1 6.1406 2.5051 6.8284 18 1 6.1931 3.7529 8.9070 19 1 4.1225 3.5625 7.6592 20 6 2.9500 5.4306 4.5706 21 6 2.7670 4.9746 3.1196 22 6 3.3540 1.2655 -0.7304 23 6 4.2691 0.2394 -0.0591 24 6 3.1289 0.8696 -2.1911 25 1 -0.3633 -1.0246 -0.0796 26 1 -0.3633 0.4433 0.9271 27 1 -0.3633 0.5812 -0.8475 28 1 2.8530 3.6127 0.9336 29 1 2.1196 3.0014 3.6930 30 1 5.0254 3.4777 2.8948 31 1 4.3511 1.9274 3.4537 32 1 5.4891 3.2305 5.2866 33 1 3.7683 2.9129 5.6198 34 1 7.7552 5.5384 7.5338 35 1 2.1260 5.0559 5.1780 36 1 2.9702 6.5195 4.6139 37 1 1.7853 5.2850 2.7617 38 1 3.5405 5.4239 2.4967 39 1 3.8198 2.2501 -0.6885 40 1 5.2262 0.2107 -0.5797 41 1 4.4294 0.5214 0.9816 42 1 3.8033 -0.7451 -0.1010 43 1 2.5313 1.6346 -2.6869 44 1 4.0911 0.7772 -2.6948 45 1 2.6041 -0.0848 -2.2320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613657206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:40 Heat of formation + Delta-G solvation = -93.518794 kcal Electronic energy + Delta-G solvation = -23917.733677 eV Core-core repulsion = 20548.699710 eV Total energy + Delta-G solvation = -3369.033967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42400 -39.62194 -38.33721 -36.19985 -35.70770 -34.03576 -32.01048 -31.89857 -28.97441 -28.03851 -27.33225 -26.29664 -24.45403 -23.66609 -22.11158 -21.32467 -20.78947 -19.00228 -18.33190 -17.95899 -17.37003 -16.87320 -16.36196 -15.98100 -15.74907 -15.65462 -15.37942 -15.02055 -14.80533 -14.61611 -14.49956 -14.12891 -14.02858 -13.81836 -13.46702 -13.36180 -12.93269 -12.73317 -12.60498 -12.53624 -12.24330 -12.11693 -12.06584 -11.81845 -11.75784 -11.67877 -11.53940 -11.50973 -11.40948 -10.78854 -10.25860 -10.04680 -8.97199 -8.19681 -5.51781 1.26613 1.37059 1.45310 1.57467 2.06702 2.38163 2.81785 3.02473 3.30988 3.63560 3.73651 3.79697 3.91999 3.94064 4.14816 4.21116 4.28737 4.35862 4.43432 4.49012 4.53979 4.65689 4.66004 4.70384 4.83449 4.83861 4.84194 4.92228 4.96089 5.00268 5.04414 5.06736 5.13487 5.16027 5.37238 5.41458 5.48291 5.50332 5.85792 6.03798 6.11570 6.60378 6.88680 7.27191 7.59014 8.01094 9.00068 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.004062 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.417890 B = 6891.997387 C = 6967.441374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.375 6.375 3 C 0.081 3.919 4 H 0.119 0.881 5 C 0.486 3.514 6 O -0.576 6.576 7 N -0.708 5.708 8 C 0.160 3.840 9 C -0.128 4.128 10 C 0.125 3.875 11 N -0.619 5.619 12 C -0.245 4.245 13 H 0.063 0.937 14 C -0.027 4.027 15 N -0.953 5.953 16 Si 0.936 3.064 17 H -0.280 1.280 18 H -0.307 1.307 19 H -0.269 1.269 20 C 0.142 3.858 21 C -0.124 4.124 22 C -0.085 4.085 23 C -0.145 4.145 24 C -0.139 4.139 25 H 0.097 0.903 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.415 0.585 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 -8.006 -21.439 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.019 3.981 4 H 0.136 0.864 5 C 0.273 3.727 6 O -0.455 6.455 7 N -0.361 5.361 8 C 0.055 3.945 9 C -0.168 4.168 10 C 0.000 4.000 11 N -0.343 5.343 12 C -0.375 4.375 13 H 0.080 0.920 14 C -0.223 4.223 15 N -0.599 5.599 16 Si 0.766 3.234 17 H -0.208 1.208 18 H -0.236 1.236 19 H -0.193 1.193 20 C 0.017 3.983 21 C -0.163 4.163 22 C -0.103 4.103 23 C -0.202 4.202 24 C -0.196 4.196 25 H 0.116 0.884 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.252 0.748 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.436 -8.709 -20.709 26.177 hybrid contribution 0.275 -0.309 1.132 1.205 sum -13.161 -9.018 -19.577 25.255 Atomic orbital electron populations 1.23007 0.79718 1.04112 1.00339 1.87963 1.21167 1.25829 1.94221 1.22314 0.98473 0.87044 0.90231 0.86369 1.22055 0.75956 0.81542 0.93118 1.90696 1.52348 1.54545 1.47920 1.46063 1.66880 1.14389 1.08802 1.20664 0.95530 0.95454 0.82875 1.22200 0.98160 0.99557 0.96898 1.21265 0.98551 0.84698 0.95518 1.44524 1.16793 1.02627 1.70382 1.18917 1.08996 0.94693 1.14887 0.91958 1.25815 0.96760 1.00614 0.99081 1.69935 1.10527 1.43587 1.35877 0.86098 0.78540 0.81027 0.77754 1.20759 1.23589 1.19344 1.21119 0.86026 0.98379 0.92759 1.22146 1.03367 0.92599 0.98176 1.21296 0.91587 1.01130 0.96313 1.21746 0.99791 0.99585 0.99086 1.21756 1.02744 1.02272 0.92824 0.88422 0.95436 0.91185 0.74757 0.91897 0.91457 0.93000 0.93197 0.96105 0.92926 0.95135 0.91081 0.88360 0.90686 0.87915 0.91103 0.95481 0.92881 0.90745 0.91399 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.87 113.37 1.23 1.63 16 2 O -0.37 -8.27 8.48 -129.99 -1.10 -9.37 16 3 C 0.08 1.48 2.23 29.85 0.07 1.55 16 4 H 0.12 1.34 7.72 -2.39 -0.02 1.32 16 5 C 0.49 12.77 5.97 87.66 0.52 13.29 16 6 O -0.58 -21.25 16.17 15.97 0.26 -20.99 16 7 N -0.71 -16.14 5.00 -442.35 -2.21 -18.35 16 8 C 0.16 4.80 2.41 45.03 0.11 4.91 16 9 C -0.13 -4.68 5.66 30.68 0.17 -4.50 16 10 C 0.13 5.63 4.20 86.36 0.36 6.00 16 11 N -0.62 -28.96 2.76 -699.08 -1.93 -30.88 16 12 C -0.25 -13.79 10.03 84.03 0.84 -12.95 16 13 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 14 C -0.03 -1.62 5.23 84.86 0.44 -1.18 16 15 N -0.95 -60.02 13.97 21.65 0.30 -59.72 16 16 Si 0.94 48.25 24.34 68.60 1.67 49.92 16 17 H -0.28 -13.99 6.52 99.48 0.65 -13.35 16 18 H -0.31 -15.93 7.11 99.48 0.71 -15.22 16 19 H -0.27 -13.54 6.80 99.48 0.68 -12.87 16 20 C 0.14 5.17 6.52 86.36 0.56 5.73 16 21 C -0.12 -3.35 5.55 30.68 0.17 -3.18 16 22 C -0.08 -1.31 2.75 -10.79 -0.03 -1.34 16 23 C -0.14 -3.06 8.81 71.98 0.63 -2.43 16 24 C -0.14 -1.55 9.12 71.98 0.66 -0.89 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.72 7.98 -2.39 -0.02 0.70 16 28 H 0.42 6.31 8.33 -92.71 -0.77 5.53 16 29 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 2.48 4.53 -2.38 -0.01 2.47 16 33 H 0.02 0.96 7.14 -2.39 -0.02 0.94 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 39 H 0.10 1.24 7.83 -2.39 -0.02 1.22 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.03 0.71 7.30 -2.39 -0.02 0.70 16 42 H 0.05 1.24 7.61 -2.39 -0.02 1.22 16 43 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.75 7.65 -2.39 -0.02 0.73 16 Total: -1.00 -75.18 349.90 2.83 -72.34 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.10 Total: 10.41 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.75 Total: 6.64 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.84 Total: -108.95 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.84 Total: -30.36 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -75.18 2.83 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613657206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.175 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds