Wall clock time and date at job start Tue Mar 31 2020 03:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47513 * 2 1 4 4 C 1.53003 * 109.46748 * 120.00305 * 2 1 3 5 5 N 1.46502 * 109.47081 * 174.99549 * 4 2 1 6 6 C 1.46498 * 119.99734 * 95.82666 * 5 4 2 7 7 C 1.50708 * 109.47041 * 85.09894 * 6 5 4 8 8 H 1.07997 * 119.99922 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00094 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99885 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00058 * 179.71949 * 9 7 6 12 12 H 1.48496 * 109.47119 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47156 * 120.00149 * 11 9 7 14 14 H 1.48501 * 109.47341 * 240.00247 * 11 9 7 15 15 C 1.34777 * 120.00183 * 275.82991 * 5 4 2 16 16 O 1.21278 * 119.99521 * 4.80838 * 15 5 4 17 17 C 1.50696 * 119.99924 * 184.80653 * 15 5 4 18 18 H 1.08996 * 109.50860 * 42.03948 * 17 15 5 19 19 C 1.53091 * 109.50916 * 281.90515 * 17 15 5 20 20 N 1.47010 * 109.26138 * 183.21817 * 19 17 15 21 21 C 1.46897 * 111.00416 * 182.39566 * 20 19 17 22 22 C 1.47016 * 110.75339 * 58.61764 * 20 19 17 23 23 C 1.53103 * 109.25541 * 301.38646 * 22 20 19 24 24 O 1.43012 * 109.50411 * 162.12364 * 17 15 5 25 25 H 1.09003 * 109.47175 * 300.00592 * 1 2 3 26 26 H 1.09002 * 109.46859 * 59.99435 * 1 2 3 27 27 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 239.99407 * 2 1 3 29 29 H 1.08996 * 109.47359 * 59.99944 * 3 2 1 30 30 H 1.09003 * 109.47160 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47441 * 299.99655 * 3 2 1 32 32 H 1.09000 * 109.47195 * 54.99815 * 4 2 1 33 33 H 1.09000 * 109.46754 * 294.99483 * 4 2 1 34 34 H 1.08996 * 109.47535 * 325.09486 * 6 5 4 35 35 H 1.09005 * 109.47149 * 205.09009 * 6 5 4 36 36 H 0.96998 * 120.00019 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.50847 * 303.15403 * 19 17 15 38 38 H 1.09002 * 109.50326 * 63.28224 * 19 17 15 39 39 H 1.09003 * 109.47332 * 292.41528 * 21 20 19 40 40 H 1.09004 * 109.47157 * 52.41045 * 21 20 19 41 41 H 1.09002 * 109.47812 * 172.41117 * 21 20 19 42 42 H 1.08994 * 109.50554 * 181.45543 * 22 20 19 43 43 H 1.09001 * 109.50535 * 61.31921 * 22 20 19 44 44 H 1.08998 * 109.50666 * 296.91257 * 23 22 20 45 45 H 1.08996 * 109.50276 * 176.78483 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8266 1.1906 6 6 4.3339 0.1669 1.8716 7 6 4.5098 -0.2295 3.3150 8 1 4.0464 -1.1309 3.6877 9 6 5.2623 0.5588 4.1595 10 7 5.8271 1.6563 3.7054 11 14 5.4739 0.0717 5.9504 12 1 4.7397 -1.1927 6.2095 13 1 6.9165 -0.1253 6.2427 14 1 4.9343 1.1456 6.8226 15 6 4.0760 -1.8374 0.5101 16 8 3.3895 -2.6090 -0.1257 17 6 5.5729 -2.0086 0.5392 18 1 5.9385 -1.8442 1.5528 19 6 6.2217 -0.9972 -0.4095 20 7 7.6746 -1.2197 -0.4357 21 6 8.3433 -0.2314 -1.2924 22 6 7.9841 -2.5895 -0.8709 23 6 7.3176 -3.5849 0.0824 24 8 5.9102 -3.3332 0.1188 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4423 -0.0005 31 1 1.6769 1.9563 -0.8900 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.8521 1.1432 1.8190 35 1 5.3091 0.2163 1.3871 36 1 6.3568 2.2107 4.2995 37 1 5.8156 -1.1267 -1.4127 38 1 6.0146 0.0143 -0.0601 39 1 8.0603 -0.4005 -2.3313 40 1 8.0420 0.7724 -0.9925 41 1 9.4237 -0.3325 -1.1890 42 1 9.0635 -2.7402 -0.8582 43 1 7.6061 -2.7444 -1.8815 44 1 7.7345 -3.4661 1.0825 45 1 7.4968 -4.6010 -0.2689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746172903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:09 Heat of formation + Delta-G solvation = -79.103654 kcal Electronic energy + Delta-G solvation = -24545.925332 eV Core-core repulsion = 21177.516452 eV Total energy + Delta-G solvation = -3368.408880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.97162 -38.41003 -36.05615 -35.29063 -34.08588 -32.32339 -31.08327 -28.63879 -27.58037 -26.77029 -25.97185 -24.13800 -23.90611 -22.72691 -20.40889 -20.02199 -18.47772 -16.75396 -16.52356 -16.12988 -15.83176 -15.25420 -14.90650 -14.69783 -14.51872 -14.43059 -14.20830 -13.66759 -13.35055 -12.97476 -12.75610 -12.44275 -12.27433 -12.18669 -12.00876 -11.84663 -11.51966 -11.40933 -11.25268 -11.15525 -11.00247 -10.91080 -10.63101 -10.54124 -10.38913 -10.21966 -10.07567 -9.66822 -9.32594 -8.91642 -8.53057 -8.23427 -7.69442 -6.17947 -4.24749 3.21073 3.22634 3.31688 3.36806 3.55255 4.02353 4.31638 4.53048 5.04291 5.10041 5.16144 5.16564 5.28425 5.33343 5.35684 5.46999 5.48768 5.55595 5.63204 5.63953 5.85080 5.89946 5.92523 5.97587 6.01116 6.04267 6.06081 6.18679 6.25935 6.30377 6.37572 6.44123 6.61491 6.76523 6.83628 7.05278 7.07396 7.16255 7.38326 7.60490 7.76302 8.05024 8.32045 8.79334 9.00276 9.43110 10.88528 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.008274 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.649938 B = 3383.091404 C = 5060.492545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.130 3.870 5 N -0.589 5.589 6 C 0.224 3.776 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.524 3.476 16 O -0.554 6.554 17 C 0.079 3.921 18 H 0.108 0.892 19 C 0.032 3.968 20 N -0.535 5.535 21 C 0.027 3.973 22 C 0.017 3.983 23 C 0.063 3.937 24 O -0.364 6.364 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.039 0.961 38 H 0.103 0.897 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 -2.123 -8.037 8.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.201 4.201 4 C 0.006 3.994 5 N -0.320 5.320 6 C 0.105 3.895 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.310 3.690 16 O -0.433 6.433 17 C 0.018 3.982 18 H 0.126 0.874 19 C -0.096 4.096 20 N -0.260 5.260 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.015 4.015 24 O -0.282 6.282 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.121 0.879 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.784 -2.427 -7.867 8.270 hybrid contribution 0.266 0.058 0.356 0.448 sum 1.050 -2.369 -7.510 7.945 Atomic orbital electron populations 1.21743 0.95323 1.01445 1.01362 1.21492 0.95291 0.96795 0.99603 1.21869 1.01922 0.95488 1.00870 1.21351 0.80344 1.00389 0.97294 1.48119 1.06597 1.27153 1.50154 1.19767 0.90443 0.87146 0.92137 1.21526 1.32356 1.09423 0.94524 0.92024 1.24909 0.95124 0.94704 0.98849 1.69918 1.32992 1.13718 1.35981 0.86494 0.78038 0.78654 0.84634 1.19660 1.20806 1.20905 1.19874 0.88809 0.80961 0.79339 1.90602 1.64727 1.44860 1.43082 1.22011 0.93091 0.82847 1.00203 0.87433 1.22773 0.87271 1.01175 0.98415 1.62145 1.08973 1.02682 1.52179 1.22365 0.99360 0.96326 0.94030 1.22827 1.01085 0.89539 0.97719 1.22667 0.81552 0.98043 0.99203 1.88034 1.22218 1.29278 1.88627 0.92707 0.93041 0.92833 0.91173 0.92605 0.92003 0.93715 0.91515 0.90035 0.93947 0.93645 0.92602 0.94243 0.87856 0.95861 0.90812 0.91269 0.89796 0.94185 0.92016 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 2 C -0.11 -1.82 3.08 -90.62 -0.28 -2.10 16 3 C -0.14 -2.26 8.34 37.15 0.31 -1.95 16 4 C 0.13 2.42 4.76 -4.04 -0.02 2.40 16 5 N -0.59 -12.38 2.19 -175.05 -0.38 -12.77 16 6 C 0.22 5.14 3.98 -5.19 -0.02 5.12 16 7 C -0.54 -13.81 9.05 -34.44 -0.31 -14.12 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -23.87 13.29 55.43 0.74 -23.13 16 11 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 15 C 0.52 11.50 6.91 -10.99 -0.08 11.42 16 16 O -0.55 -13.32 16.18 -13.65 -0.22 -13.54 16 17 C 0.08 1.61 2.37 -27.84 -0.07 1.55 16 18 H 0.11 2.38 7.18 -51.93 -0.37 2.01 16 19 C 0.03 0.57 4.65 -3.72 -0.02 0.55 16 20 N -0.54 -8.52 4.98 -242.60 -1.21 -9.73 16 21 C 0.03 0.35 9.63 60.06 0.58 0.93 16 22 C 0.02 0.23 5.66 -3.71 -0.02 0.21 16 23 C 0.06 0.94 7.01 37.21 0.26 1.20 16 24 O -0.36 -7.18 10.07 -54.44 -0.55 -7.72 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.07 6.26 -51.93 -0.32 0.74 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.27 7.68 -51.93 -0.40 0.88 16 33 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 34 H 0.04 1.01 6.46 -51.93 -0.34 0.67 16 35 H 0.05 1.07 4.29 -51.93 -0.22 0.85 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.93 5.81 -51.93 -0.30 1.63 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -29.45 353.26 -8.57 -38.02 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.83 Total: 2.76 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.58 Total: 5.35 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.86 Total: -45.63 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.77 Total: -21.26 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.45 -8.57 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746172903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.084 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds