Wall clock time and date at job start Tue Mar 31 2020 03:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47513 * 2 1 4 4 C 1.53003 * 109.46748 * 120.00305 * 2 1 3 5 5 N 1.46502 * 109.47081 * 174.99549 * 4 2 1 6 6 C 1.46498 * 119.99734 * 95.82666 * 5 4 2 7 7 C 1.50708 * 109.47041 * 85.09894 * 6 5 4 8 8 H 1.07997 * 119.99922 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00094 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99885 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00058 * 179.71949 * 9 7 6 12 12 H 1.48496 * 109.47119 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47156 * 120.00149 * 11 9 7 14 14 H 1.48501 * 109.47341 * 240.00247 * 11 9 7 15 15 C 1.34777 * 120.00183 * 275.82991 * 5 4 2 16 16 O 1.21278 * 119.99521 * 4.80838 * 15 5 4 17 17 C 1.50696 * 119.99924 * 184.80653 * 15 5 4 18 18 H 1.08996 * 109.50860 * 42.03948 * 17 15 5 19 19 C 1.53091 * 109.50916 * 281.90515 * 17 15 5 20 20 N 1.47010 * 109.26138 * 183.21817 * 19 17 15 21 21 C 1.46897 * 111.00416 * 182.39566 * 20 19 17 22 22 C 1.47016 * 110.75339 * 58.61764 * 20 19 17 23 23 C 1.53103 * 109.25541 * 301.38646 * 22 20 19 24 24 O 1.43012 * 109.50411 * 162.12364 * 17 15 5 25 25 H 1.09003 * 109.47175 * 300.00592 * 1 2 3 26 26 H 1.09002 * 109.46859 * 59.99435 * 1 2 3 27 27 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47175 * 239.99407 * 2 1 3 29 29 H 1.08996 * 109.47359 * 59.99944 * 3 2 1 30 30 H 1.09003 * 109.47160 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47441 * 299.99655 * 3 2 1 32 32 H 1.09000 * 109.47195 * 54.99815 * 4 2 1 33 33 H 1.09000 * 109.46754 * 294.99483 * 4 2 1 34 34 H 1.08996 * 109.47535 * 325.09486 * 6 5 4 35 35 H 1.09005 * 109.47149 * 205.09009 * 6 5 4 36 36 H 0.96998 * 120.00019 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.50847 * 303.15403 * 19 17 15 38 38 H 1.09002 * 109.50326 * 63.28224 * 19 17 15 39 39 H 1.09003 * 109.47332 * 292.41528 * 21 20 19 40 40 H 1.09004 * 109.47157 * 52.41045 * 21 20 19 41 41 H 1.09002 * 109.47812 * 172.41117 * 21 20 19 42 42 H 1.08994 * 109.50554 * 181.45543 * 22 20 19 43 43 H 1.09001 * 109.50535 * 61.31921 * 22 20 19 44 44 H 1.08998 * 109.50666 * 296.91257 * 23 22 20 45 45 H 1.08996 * 109.50276 * 176.78483 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8266 1.1906 6 6 4.3339 0.1669 1.8716 7 6 4.5098 -0.2295 3.3150 8 1 4.0464 -1.1309 3.6877 9 6 5.2623 0.5588 4.1595 10 7 5.8271 1.6563 3.7054 11 14 5.4739 0.0717 5.9504 12 1 4.7397 -1.1927 6.2095 13 1 6.9165 -0.1253 6.2427 14 1 4.9343 1.1456 6.8226 15 6 4.0760 -1.8374 0.5101 16 8 3.3895 -2.6090 -0.1257 17 6 5.5729 -2.0086 0.5392 18 1 5.9385 -1.8442 1.5528 19 6 6.2217 -0.9972 -0.4095 20 7 7.6746 -1.2197 -0.4357 21 6 8.3433 -0.2314 -1.2924 22 6 7.9841 -2.5895 -0.8709 23 6 7.3176 -3.5849 0.0824 24 8 5.9102 -3.3332 0.1188 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4423 -0.0005 31 1 1.6769 1.9563 -0.8900 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1584 2.1370 34 1 3.8521 1.1432 1.8190 35 1 5.3091 0.2163 1.3871 36 1 6.3568 2.2107 4.2995 37 1 5.8156 -1.1267 -1.4127 38 1 6.0146 0.0143 -0.0601 39 1 8.0603 -0.4005 -2.3313 40 1 8.0420 0.7724 -0.9925 41 1 9.4237 -0.3325 -1.1890 42 1 9.0635 -2.7402 -0.8582 43 1 7.6061 -2.7444 -1.8815 44 1 7.7345 -3.4661 1.0825 45 1 7.4968 -4.6010 -0.2689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746172903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:08 Heat of formation + Delta-G solvation = -97.251135 kcal Electronic energy + Delta-G solvation = -24546.712266 eV Core-core repulsion = 21177.516452 eV Total energy + Delta-G solvation = -3369.195814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54112 -39.89475 -37.61810 -36.64701 -35.75528 -34.22158 -32.46045 -29.88442 -29.41797 -27.99757 -27.46216 -25.70341 -25.11276 -24.51112 -21.72753 -21.40098 -20.10423 -18.67685 -18.15863 -17.79375 -17.21968 -16.62750 -16.43470 -16.28737 -16.00400 -15.85797 -15.62833 -15.02677 -14.74981 -14.45999 -14.23560 -14.14595 -13.69016 -13.65352 -13.25448 -13.07872 -12.98835 -12.89281 -12.73879 -12.63419 -12.56197 -12.42140 -12.12147 -12.07911 -11.85262 -11.73890 -11.57357 -11.50750 -10.77905 -10.68352 -10.48222 -9.46260 -9.45158 -8.18332 -6.31586 1.40201 1.43454 1.50592 1.56064 1.97663 2.41549 2.77657 3.03459 3.12005 3.61555 3.75672 3.92123 3.94823 3.98988 4.03588 4.18642 4.20395 4.32477 4.46775 4.54108 4.61019 4.62127 4.62993 4.67778 4.77090 4.79993 4.89587 4.90475 4.95892 4.97949 5.02358 5.06363 5.19356 5.27922 5.41528 5.46083 5.66700 5.79697 5.81536 5.96643 6.06686 6.08370 6.51922 6.79958 7.22893 7.40404 8.86978 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.008274 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.649938 B = 3383.091404 C = 5060.492545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.124 3.876 5 N -0.587 5.587 6 C 0.242 3.758 7 C -0.551 4.551 8 H 0.048 0.952 9 C 0.028 3.972 10 N -0.911 5.911 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.518 3.482 16 O -0.579 6.579 17 C 0.087 3.913 18 H 0.083 0.917 19 C 0.045 3.955 20 N -0.552 5.552 21 C 0.027 3.973 22 C 0.019 3.981 23 C 0.053 3.947 24 O -0.387 6.387 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.043 0.957 44 H 0.058 0.942 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -2.103 -8.387 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.196 4.196 4 C 0.001 3.999 5 N -0.317 5.317 6 C 0.121 3.879 7 C -0.589 4.589 8 H 0.066 0.934 9 C -0.173 4.173 10 N -0.550 5.550 11 Si 0.776 3.224 12 H -0.199 1.199 13 H -0.204 1.204 14 H -0.202 1.202 15 C 0.305 3.695 16 O -0.460 6.460 17 C 0.026 3.974 18 H 0.101 0.899 19 C -0.084 4.084 20 N -0.278 5.278 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.024 4.024 24 O -0.306 6.306 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.305 -2.398 -8.218 8.660 hybrid contribution 0.138 0.011 0.455 0.476 sum 1.443 -2.387 -7.763 8.249 Atomic orbital electron populations 1.21701 0.92635 1.02052 1.02837 1.21409 0.97453 0.96444 0.97146 1.21812 1.00420 0.95308 1.02088 1.21544 0.79053 1.00444 0.98852 1.48130 1.07526 1.26585 1.49471 1.19457 0.90367 0.86986 0.91057 1.21678 1.32407 1.08978 0.95864 0.93373 1.25533 0.94852 0.94688 1.02213 1.69990 1.33436 1.14381 1.37197 0.85622 0.77963 0.78245 0.80545 1.19909 1.20383 1.20196 1.20249 0.89687 0.80612 0.78937 1.90570 1.65465 1.45709 1.44257 1.21787 0.91920 0.84217 0.99507 0.89882 1.22514 0.89018 0.99471 0.97356 1.62166 1.07311 1.04521 1.53756 1.22433 1.00320 0.95160 0.94104 1.22898 1.02863 0.87838 0.97216 1.23036 0.79271 1.00272 0.99776 1.87999 1.25309 1.28707 1.88597 0.91654 0.91121 0.92713 0.93009 0.92450 0.94280 0.91362 0.92199 0.89985 0.94695 0.94215 0.92328 0.94513 0.89267 0.94672 0.91578 0.89009 0.86524 0.93856 0.92327 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.19 71.98 0.66 -2.70 16 2 C -0.10 -3.37 3.08 -10.79 -0.03 -3.41 16 3 C -0.14 -4.27 8.34 71.98 0.60 -3.67 16 4 C 0.12 4.70 4.76 86.38 0.41 5.12 16 5 N -0.59 -25.45 2.19 -826.14 -1.81 -27.26 16 6 C 0.24 11.38 3.98 85.64 0.34 11.72 16 7 C -0.55 -28.70 9.05 25.60 0.23 -28.47 16 8 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 9 C 0.03 1.47 5.46 84.65 0.46 1.94 16 10 N -0.91 -49.11 13.29 21.45 0.28 -48.83 16 11 Si 0.95 41.90 29.54 68.60 2.03 43.92 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 15 C 0.52 23.45 6.91 87.66 0.61 24.06 16 16 O -0.58 -28.56 16.18 15.34 0.25 -28.31 16 17 C 0.09 3.62 2.37 29.88 0.07 3.69 16 18 H 0.08 3.83 7.18 -2.39 -0.02 3.82 16 19 C 0.05 1.64 4.65 86.31 0.40 2.05 16 20 N -0.55 -17.04 4.98 -921.44 -4.59 -21.63 16 21 C 0.03 0.66 9.63 127.69 1.23 1.89 16 22 C 0.02 0.50 5.66 86.32 0.49 0.99 16 23 C 0.05 1.51 7.01 72.02 0.50 2.02 16 24 O -0.39 -15.36 10.07 -130.61 -1.31 -16.68 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.86 8.00 -2.39 -0.02 1.84 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.36 6.26 -2.39 -0.01 1.35 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.34 7.68 -2.39 -0.02 2.32 16 33 H 0.08 3.08 8.03 -2.39 -0.02 3.06 16 34 H 0.04 1.70 6.46 -2.39 -0.02 1.69 16 35 H 0.04 1.94 4.29 -2.38 -0.01 1.93 16 36 H 0.27 13.68 8.31 -92.71 -0.77 12.90 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 3.46 5.81 -2.39 -0.01 3.45 16 39 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 1.69 8.08 -2.38 -0.02 1.67 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -63.24 353.26 1.77 -61.47 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.95 Total: 22.09 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.98 Total: 15.22 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -6.12 Total: -97.71 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.07 Total: -44.99 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -63.24 1.77 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746172903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.777 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds