Wall clock time and date at job start Tue Mar 31 2020 03:18:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.47184 * 2 1
4 4 C 1.53004 * 109.47046 * 174.50525 * 3 2 1
5 5 C 1.52998 * 109.90467 * 65.10014 * 4 3 2
6 6 O 1.42901 * 109.47337 * 293.66812 * 5 4 3
7 7 C 1.53992 * 109.91679 * 303.99967 * 4 3 2
8 8 C 1.54591 * 105.14219 * 241.87116 * 7 4 3
9 9 C 1.54941 * 102.91885 * 21.95624 * 8 7 4
10 10 N 1.47896 * 109.91728 * 186.41273 * 4 3 2
11 11 C 1.46904 * 110.99951 * 333.50295 * 10 4 3
12 12 C 1.50697 * 109.46955 * 170.00305 * 11 10 4
13 13 O 1.21284 * 120.00352 * 0.02562 * 12 11 10
14 14 N 1.34778 * 119.99782 * 180.02562 * 12 11 10
15 15 C 1.46506 * 119.99894 * 180.02562 * 14 12 11
16 16 C 1.50702 * 109.47020 * 179.97438 * 15 14 12
17 17 H 1.07998 * 120.00133 * 0.02562 * 16 15 14
18 18 C 1.37881 * 119.99695 * 179.97438 * 16 15 14
19 19 N 1.31511 * 119.99886 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 119.99755 * 179.97438 * 18 16 15
21 21 H 1.48499 * 109.47063 * 0.02562 * 20 18 16
22 22 H 1.48499 * 109.47165 * 120.00017 * 20 18 16
23 23 H 1.48494 * 109.47060 * 240.00163 * 20 18 16
24 24 H 1.08995 * 109.47188 * 300.00187 * 1 2 3
25 25 H 1.08999 * 109.47266 * 179.97438 * 1 2 3
26 26 H 1.09006 * 109.46507 * 59.99798 * 1 2 3
27 27 H 1.09006 * 109.46507 * 120.00202 * 2 1 3
28 28 H 1.08995 * 109.47188 * 239.99812 * 2 1 3
29 29 H 1.08994 * 109.47516 * 294.50592 * 3 2 1
30 30 H 1.09005 * 109.46886 * 54.51156 * 3 2 1
31 31 H 1.09001 * 109.46933 * 53.67279 * 5 4 3
32 32 H 1.08997 * 109.46817 * 173.67305 * 5 4 3
33 33 H 0.96700 * 114.00252 * 179.97438 * 6 5 4
34 34 H 1.09000 * 110.31226 * 0.78650 * 7 4 3
35 35 H 1.09002 * 110.31046 * 122.95216 * 7 4 3
36 36 H 1.09001 * 110.73144 * 140.31244 * 8 7 4
37 37 H 1.09004 * 110.72626 * 263.59839 * 8 7 4
38 38 H 1.09001 * 110.66362 * 81.02948 * 9 8 7
39 39 H 1.09006 * 110.66890 * 204.15000 * 9 8 7
40 40 H 1.08998 * 109.47351 * 290.00401 * 11 10 4
41 41 H 1.09000 * 109.46508 * 50.00517 * 11 10 4
42 42 H 0.96992 * 119.99917 * 0.02562 * 14 12 11
43 43 H 1.09002 * 109.46974 * 300.00289 * 15 14 12
44 44 H 1.08994 * 109.47160 * 59.99926 * 15 14 12
45 45 H 0.97004 * 119.99438 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 3.5638 1.4446 0.1381
5 6 4.1995 0.7983 -1.0944
6 8 3.8574 -0.5885 -1.1350
7 6 3.9767 0.6745 1.4061
8 6 4.6971 1.7150 2.2940
9 6 4.1538 3.0633 1.7577
10 7 4.0536 2.8314 0.2941
11 6 3.1301 3.7891 -0.3288
12 6 3.5251 5.1913 0.0568
13 8 4.4820 5.3749 0.7790
14 7 2.8149 6.2414 -0.4009
15 6 3.1993 7.6047 -0.0265
16 6 2.2518 8.5871 -0.6653
17 1 1.4439 8.2316 -1.2876
18 6 2.4158 9.9398 -0.4545
19 7 3.3993 10.3726 0.3037
20 14 1.2417 11.1576 -1.2470
21 1 0.2300 10.4212 -2.0466
22 1 0.5585 11.9459 -0.1902
23 1 2.0030 12.0737 -2.1337
24 1 -0.3633 0.5138 0.8899
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3632 0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 1.8934 -0.5138 -0.8899
29 1 1.7593 1.9271 -0.9350
30 1 1.5987 1.9839 0.8368
31 1 3.8298 1.2903 -1.9940
32 1 5.2831 0.9038 -1.0418
33 1 4.2270 -1.0629 -1.8923
34 1 3.0955 0.2866 1.9170
35 1 4.6554 -0.1392 1.1504
36 1 4.4283 1.5803 3.3417
37 1 5.7772 1.6540 2.1608
38 1 3.1728 3.2785 2.1812
39 1 4.8523 3.8722 1.9721
40 1 3.1744 3.6842 -1.4128
41 1 2.1148 3.5902 0.0143
42 1 2.0494 6.0945 -0.9781
43 1 3.1558 7.7096 1.0576
44 1 4.2144 7.8033 -0.3702
45 1 3.5144 11.3243 0.4523
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000769913679.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:04
Heat of formation + Delta-G solvation = -84.629019 kcal
Electronic energy + Delta-G solvation = -23590.557385 eV
Core-core repulsion = 20221.908907 eV
Total energy + Delta-G solvation = -3368.648478 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.48020 -38.45867 -36.44077 -34.43465 -34.06164 -32.50723 -32.11385 -30.31355
-27.90013 -26.43328 -25.75813 -24.64234 -22.51408 -22.00648 -20.96998 -19.71169
-18.61217 -17.42682 -17.04594 -16.04611 -16.00072 -15.54005 -15.15503 -15.01650
-14.81847 -14.47117 -13.92863 -13.72105 -13.54773 -13.06484 -12.93532 -12.61252
-12.46284 -12.30947 -12.00273 -11.84579 -11.74339 -11.55673 -11.32146 -11.10103
-10.98090 -10.93354 -10.80622 -10.65418 -10.53438 -10.32731 -10.20413 -9.82883
-9.38482 -8.90906 -8.74424 -8.23427 -7.85966 -6.17622 -4.24429 3.22678
3.29736 3.32699 3.37155 3.53227 4.09460 4.34550 4.49674 4.58691
4.75715 4.80345 5.03521 5.12266 5.18589 5.19755 5.23190 5.33514
5.40987 5.45191 5.47568 5.51930 5.60987 5.64100 5.72375 5.80380
5.81792 5.94033 5.95820 6.02240 6.13928 6.26441 6.29584 6.44441
6.48091 7.00803 7.05399 7.32077 7.45949 7.46991 7.51475 7.66954
7.96383 8.62620 8.78196 9.11669 9.42455 10.92620
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.024130 B = 0.003513 C = 0.003279
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1160.096317 B = 7969.368415 C = 8537.088653
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.123 4.123
3 C -0.134 4.134
4 C 0.095 3.905
5 C 0.097 3.903
6 O -0.566 6.566
7 C -0.114 4.114
8 C -0.129 4.129
9 C 0.037 3.963
10 N -0.489 5.489
11 C 0.019 3.981
12 C 0.498 3.502
13 O -0.542 6.542
14 N -0.713 5.713
15 C 0.251 3.749
16 C -0.543 4.543
17 H 0.063 0.937
18 C 0.063 3.937
19 N -0.885 5.885
20 Si 0.903 3.097
21 H -0.272 1.272
22 H -0.282 1.282
23 H -0.282 1.282
24 H 0.048 0.952
25 H 0.050 0.950
26 H 0.050 0.950
27 H 0.061 0.939
28 H 0.087 0.913
29 H 0.065 0.935
30 H 0.060 0.940
31 H 0.043 0.957
32 H 0.054 0.946
33 H 0.374 0.626
34 H 0.070 0.930
35 H 0.074 0.926
36 H 0.068 0.932
37 H 0.072 0.928
38 H 0.037 0.963
39 H 0.117 0.883
40 H 0.097 0.903
41 H 0.069 0.931
42 H 0.389 0.611
43 H 0.026 0.974
44 H 0.027 0.973
45 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.316 -22.210 -1.897 22.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.161 4.161
3 C -0.173 4.173
4 C 0.005 3.995
5 C 0.019 3.981
6 O -0.371 6.371
7 C -0.152 4.152
8 C -0.168 4.168
9 C -0.090 4.090
10 N -0.213 5.213
11 C -0.112 4.112
12 C 0.282 3.718
13 O -0.421 6.421
14 N -0.362 5.362
15 C 0.130 3.870
16 C -0.581 4.581
17 H 0.081 0.919
18 C -0.140 4.140
19 N -0.523 5.523
20 Si 0.731 3.269
21 H -0.196 1.196
22 H -0.208 1.208
23 H -0.208 1.208
24 H 0.067 0.933
25 H 0.069 0.931
26 H 0.069 0.931
27 H 0.080 0.920
28 H 0.105 0.895
29 H 0.083 0.917
30 H 0.079 0.921
31 H 0.061 0.939
32 H 0.072 0.928
33 H 0.221 0.779
34 H 0.088 0.912
35 H 0.093 0.907
36 H 0.086 0.914
37 H 0.090 0.910
38 H 0.055 0.945
39 H 0.135 0.865
40 H 0.115 0.885
41 H 0.087 0.913
42 H 0.222 0.778
43 H 0.044 0.956
44 H 0.045 0.955
45 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -1.345 -21.621 -1.014 21.687
hybrid contribution -1.562 0.636 -0.914 1.919
sum -2.908 -20.985 -1.928 21.273
Atomic orbital electron populations
1.21828 0.96827 1.01113 1.01379 1.21688 0.94332 0.96155 1.03885
1.22200 0.95213 0.98140 1.01723 1.21758 0.92981 0.89453 0.95322
1.21943 0.98589 0.81002 0.96547 1.86496 1.77023 1.21991 1.51559
1.22450 1.00521 0.97904 0.94341 1.22592 1.00718 0.94752 0.98698
1.23486 1.00997 0.98622 0.85890 1.64495 1.44158 0.99617 1.13061
1.22375 0.96163 0.91481 1.01207 1.20306 0.83728 0.86400 0.81371
1.90585 1.28127 1.85900 1.37457 1.46437 1.31414 1.08156 1.50189
1.19093 0.96356 0.75254 0.96277 1.21268 1.13978 0.91284 1.31591
0.91879 1.24953 0.95647 0.98362 0.95061 1.69987 1.30162 1.15009
1.37102 0.86366 0.80591 0.80901 0.79087 1.19643 1.20802 1.20774
0.93294 0.93093 0.93094 0.92010 0.89478 0.91665 0.92136 0.93859
0.92767 0.77929 0.91179 0.90688 0.91380 0.90957 0.94475 0.86529
0.88536 0.91309 0.77820 0.95614 0.95513 0.92504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16
2 C -0.12 -1.20 4.88 -26.73 -0.13 -1.33 16
3 C -0.13 -1.45 2.77 -26.73 -0.07 -1.53 16
4 C 0.09 1.10 0.60 -130.53 -0.08 1.02 16
5 C 0.10 0.99 6.10 37.16 0.23 1.21 16
6 O -0.57 -4.74 9.63 -35.23 -0.34 -5.08 16
7 C -0.11 -1.27 5.31 -25.38 -0.13 -1.41 16
8 C -0.13 -1.56 7.06 -24.87 -0.18 -1.74 16
9 C 0.04 0.56 5.29 -1.90 -0.01 0.55 16
10 N -0.49 -7.07 4.89 -216.43 -1.06 -8.13 16
11 C 0.02 0.28 4.54 -4.98 -0.02 0.26 16
12 C 0.50 9.86 7.54 -10.99 -0.08 9.78 16
13 O -0.54 -12.71 13.52 5.55 0.08 -12.63 16
14 N -0.71 -14.93 5.55 -61.47 -0.34 -15.27 16
15 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16
16 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16
17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16
18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
19 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16
20 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16
21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
27 H 0.06 0.63 6.05 -51.93 -0.31 0.31 16
28 H 0.09 0.86 5.74 -51.93 -0.30 0.56 16
29 H 0.06 0.69 7.07 -51.93 -0.37 0.33 16
30 H 0.06 0.71 7.39 -51.93 -0.38 0.33 16
31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
33 H 0.37 1.63 9.12 45.56 0.42 2.04 16
34 H 0.07 0.75 6.05 -51.93 -0.31 0.44 16
35 H 0.07 0.81 7.30 -51.93 -0.38 0.44 16
36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.04 0.57 8.02 -51.93 -0.42 0.15 16
39 H 0.12 2.13 5.97 -51.93 -0.31 1.82 16
40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16
41 H 0.07 0.92 5.59 -51.93 -0.29 0.63 16
42 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16
43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16
45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
LS Contribution 345.84 15.07 5.21 5.21
Total: -1.00 -31.78 345.84 -8.05 -39.83
By element:
Atomic # 1 Polarization: 13.33 SS G_CDS: -6.76 Total: 6.57 kcal
Atomic # 6 Polarization: -0.40 SS G_CDS: -0.56 Total: -0.96 kcal
Atomic # 7 Polarization: -48.08 SS G_CDS: -0.66 Total: -48.74 kcal
Atomic # 8 Polarization: -17.45 SS G_CDS: -0.26 Total: -17.72 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -31.78 -8.05 -39.83 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769913679.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.796 kcal
(2) G-P(sol) polarization free energy of solvation -31.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.577 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds