Wall clock time and date at job start Tue Mar 31 2020 03:18:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.47184 * 2 1
4 4 C 1.53004 * 109.47046 * 174.50525 * 3 2 1
5 5 C 1.52998 * 109.90467 * 65.10014 * 4 3 2
6 6 O 1.42901 * 109.47337 * 293.66812 * 5 4 3
7 7 C 1.53992 * 109.91679 * 303.99967 * 4 3 2
8 8 C 1.54591 * 105.14219 * 241.87116 * 7 4 3
9 9 C 1.54941 * 102.91885 * 21.95624 * 8 7 4
10 10 N 1.47896 * 109.91728 * 186.41273 * 4 3 2
11 11 C 1.46904 * 110.99951 * 333.50295 * 10 4 3
12 12 C 1.50697 * 109.46955 * 170.00305 * 11 10 4
13 13 O 1.21284 * 120.00352 * 0.02562 * 12 11 10
14 14 N 1.34778 * 119.99782 * 180.02562 * 12 11 10
15 15 C 1.46506 * 119.99894 * 180.02562 * 14 12 11
16 16 C 1.50702 * 109.47020 * 179.97438 * 15 14 12
17 17 H 1.07998 * 120.00133 * 0.02562 * 16 15 14
18 18 C 1.37881 * 119.99695 * 179.97438 * 16 15 14
19 19 N 1.31511 * 119.99886 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 119.99755 * 179.97438 * 18 16 15
21 21 H 1.48499 * 109.47063 * 0.02562 * 20 18 16
22 22 H 1.48499 * 109.47165 * 120.00017 * 20 18 16
23 23 H 1.48494 * 109.47060 * 240.00163 * 20 18 16
24 24 H 1.08995 * 109.47188 * 300.00187 * 1 2 3
25 25 H 1.08999 * 109.47266 * 179.97438 * 1 2 3
26 26 H 1.09006 * 109.46507 * 59.99798 * 1 2 3
27 27 H 1.09006 * 109.46507 * 120.00202 * 2 1 3
28 28 H 1.08995 * 109.47188 * 239.99812 * 2 1 3
29 29 H 1.08994 * 109.47516 * 294.50592 * 3 2 1
30 30 H 1.09005 * 109.46886 * 54.51156 * 3 2 1
31 31 H 1.09001 * 109.46933 * 53.67279 * 5 4 3
32 32 H 1.08997 * 109.46817 * 173.67305 * 5 4 3
33 33 H 0.96700 * 114.00252 * 179.97438 * 6 5 4
34 34 H 1.09000 * 110.31226 * 0.78650 * 7 4 3
35 35 H 1.09002 * 110.31046 * 122.95216 * 7 4 3
36 36 H 1.09001 * 110.73144 * 140.31244 * 8 7 4
37 37 H 1.09004 * 110.72626 * 263.59839 * 8 7 4
38 38 H 1.09001 * 110.66362 * 81.02948 * 9 8 7
39 39 H 1.09006 * 110.66890 * 204.15000 * 9 8 7
40 40 H 1.08998 * 109.47351 * 290.00401 * 11 10 4
41 41 H 1.09000 * 109.46508 * 50.00517 * 11 10 4
42 42 H 0.96992 * 119.99917 * 0.02562 * 14 12 11
43 43 H 1.09002 * 109.46974 * 300.00289 * 15 14 12
44 44 H 1.08994 * 109.47160 * 59.99926 * 15 14 12
45 45 H 0.97004 * 119.99438 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 3.5638 1.4446 0.1381
5 6 4.1995 0.7983 -1.0944
6 8 3.8574 -0.5885 -1.1350
7 6 3.9767 0.6745 1.4061
8 6 4.6971 1.7150 2.2940
9 6 4.1538 3.0633 1.7577
10 7 4.0536 2.8314 0.2941
11 6 3.1301 3.7891 -0.3288
12 6 3.5251 5.1913 0.0568
13 8 4.4820 5.3749 0.7790
14 7 2.8149 6.2414 -0.4009
15 6 3.1993 7.6047 -0.0265
16 6 2.2518 8.5871 -0.6653
17 1 1.4439 8.2316 -1.2876
18 6 2.4158 9.9398 -0.4545
19 7 3.3993 10.3726 0.3037
20 14 1.2417 11.1576 -1.2470
21 1 0.2300 10.4212 -2.0466
22 1 0.5585 11.9459 -0.1902
23 1 2.0030 12.0737 -2.1337
24 1 -0.3633 0.5138 0.8899
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3632 0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 1.8934 -0.5138 -0.8899
29 1 1.7593 1.9271 -0.9350
30 1 1.5987 1.9839 0.8368
31 1 3.8298 1.2903 -1.9940
32 1 5.2831 0.9038 -1.0418
33 1 4.2270 -1.0629 -1.8923
34 1 3.0955 0.2866 1.9170
35 1 4.6554 -0.1392 1.1504
36 1 4.4283 1.5803 3.3417
37 1 5.7772 1.6540 2.1608
38 1 3.1728 3.2785 2.1812
39 1 4.8523 3.8722 1.9721
40 1 3.1744 3.6842 -1.4128
41 1 2.1148 3.5902 0.0143
42 1 2.0494 6.0945 -0.9781
43 1 3.1558 7.7096 1.0576
44 1 4.2144 7.8033 -0.3702
45 1 3.5144 11.3243 0.4523
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000769913679.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:03
Heat of formation + Delta-G solvation = -109.800063 kcal
Electronic energy + Delta-G solvation = -23591.648883 eV
Core-core repulsion = 20221.908907 eV
Total energy + Delta-G solvation = -3369.739976 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.60430 -39.97166 -37.25514 -36.13473 -35.10478 -34.38064 -33.40113 -31.20775
-29.74163 -27.47893 -26.99817 -25.65947 -24.41016 -22.91350 -22.04026 -21.37805
-19.59281 -18.84909 -18.14887 -17.51450 -17.25944 -16.77451 -16.65759 -16.40368
-15.99620 -15.89317 -15.27496 -14.75313 -14.64274 -14.33892 -14.12834 -13.97246
-13.81395 -13.67354 -13.24653 -13.13645 -12.93684 -12.76150 -12.74288 -12.51783
-12.24831 -12.22590 -11.99969 -11.77338 -11.58166 -11.47261 -11.45698 -11.08038
-10.82016 -10.55035 -10.52082 -9.82944 -9.33991 -8.29978 -6.46488 1.42762
1.43787 1.57259 1.75916 2.24347 2.43310 2.87008 3.05132 3.53217
3.70485 3.77043 3.90699 4.07110 4.13773 4.23128 4.30401 4.35947
4.38402 4.43821 4.50667 4.59222 4.69113 4.72180 4.89958 4.91791
5.03766 5.05876 5.09241 5.10527 5.16554 5.22191 5.23954 5.30738
5.36668 5.49792 5.50210 5.69680 5.70089 5.84505 5.88817 6.03378
6.64900 6.91977 7.00736 7.23170 7.50861 8.82450
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.024130 B = 0.003513 C = 0.003279
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1160.096317 B = 7969.368415 C = 8537.088653
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.116 4.116
3 C -0.132 4.132
4 C 0.093 3.907
5 C 0.105 3.895
6 O -0.569 6.569
7 C -0.107 4.107
8 C -0.123 4.123
9 C 0.036 3.964
10 N -0.503 5.503
11 C 0.034 3.966
12 C 0.493 3.507
13 O -0.583 6.583
14 N -0.708 5.708
15 C 0.269 3.731
16 C -0.555 4.555
17 H 0.084 0.916
18 C 0.004 3.996
19 N -0.931 5.931
20 Si 0.985 3.015
21 H -0.253 1.253
22 H -0.279 1.279
23 H -0.279 1.279
24 H 0.044 0.956
25 H 0.059 0.941
26 H 0.052 0.948
27 H 0.058 0.942
28 H 0.090 0.910
29 H 0.071 0.929
30 H 0.050 0.950
31 H 0.049 0.951
32 H 0.046 0.954
33 H 0.394 0.606
34 H 0.077 0.923
35 H 0.081 0.919
36 H 0.081 0.919
37 H 0.069 0.931
38 H 0.030 0.970
39 H 0.077 0.923
40 H 0.123 0.877
41 H 0.090 0.910
42 H 0.407 0.593
43 H -0.014 1.014
44 H -0.013 1.013
45 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.323 -23.945 -3.605 24.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.153 4.153
3 C -0.170 4.170
4 C 0.003 3.997
5 C 0.026 3.974
6 O -0.377 6.377
7 C -0.145 4.145
8 C -0.161 4.161
9 C -0.091 4.091
10 N -0.228 5.228
11 C -0.097 4.097
12 C 0.280 3.720
13 O -0.463 6.463
14 N -0.359 5.359
15 C 0.146 3.854
16 C -0.593 4.593
17 H 0.102 0.898
18 C -0.196 4.196
19 N -0.570 5.570
20 Si 0.808 3.192
21 H -0.176 1.176
22 H -0.205 1.205
23 H -0.204 1.204
24 H 0.063 0.937
25 H 0.078 0.922
26 H 0.071 0.929
27 H 0.077 0.923
28 H 0.108 0.892
29 H 0.089 0.911
30 H 0.068 0.932
31 H 0.067 0.933
32 H 0.064 0.936
33 H 0.244 0.756
34 H 0.095 0.905
35 H 0.100 0.900
36 H 0.100 0.900
37 H 0.088 0.912
38 H 0.048 0.952
39 H 0.096 0.904
40 H 0.141 0.859
41 H 0.108 0.892
42 H 0.243 0.757
43 H 0.004 0.996
44 H 0.004 0.996
45 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -3.373 -23.419 -2.757 23.821
hybrid contribution -0.866 1.102 -0.343 1.443
sum -4.240 -22.317 -3.100 22.927
Atomic orbital electron populations
1.21818 0.96254 1.01700 1.01293 1.21619 0.94756 0.95142 1.03833
1.22177 0.94337 0.98990 1.01541 1.21855 0.93765 0.87621 0.96428
1.21747 0.97889 0.81982 0.95781 1.86441 1.77214 1.21033 1.52964
1.22428 1.00740 0.97499 0.93866 1.22550 1.00602 0.93274 0.99677
1.23300 0.99730 0.99111 0.86953 1.64475 1.44777 1.01143 1.12386
1.22312 0.97021 0.87682 1.02649 1.21288 0.82613 0.88098 0.80014
1.90593 1.29920 1.86812 1.39013 1.46169 1.32383 1.06488 1.50832
1.18512 0.94643 0.78498 0.93769 1.21653 1.14316 0.91664 1.31667
0.89818 1.26066 0.97402 1.00731 0.95400 1.70147 1.32390 1.15681
1.38756 0.85112 0.78211 0.77852 0.78052 1.17603 1.20482 1.20441
0.93717 0.92217 0.92853 0.92347 0.89179 0.91065 0.93181 0.93271
0.93566 0.75638 0.90453 0.90024 0.90048 0.91190 0.95156 0.90432
0.85905 0.89202 0.75717 0.99578 0.99550 0.92268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.36 9.91 71.98 0.71 -1.64 16
2 C -0.12 -1.93 4.88 30.59 0.15 -1.78 16
3 C -0.13 -2.52 2.77 30.59 0.08 -2.44 16
4 C 0.09 1.96 0.60 3.67 0.00 1.96 16
5 C 0.10 1.85 6.10 71.98 0.44 2.29 16
6 O -0.57 -7.76 9.63 -148.98 -1.43 -9.19 16
7 C -0.11 -2.19 5.31 31.47 0.17 -2.02 16
8 C -0.12 -2.90 7.06 31.80 0.22 -2.68 16
9 C 0.04 1.13 5.29 86.65 0.46 1.58 16
10 N -0.50 -14.18 4.89 -838.64 -4.10 -18.28 16
11 C 0.03 0.96 4.54 85.56 0.39 1.35 16
12 C 0.49 19.90 7.54 87.66 0.66 20.56 16
13 O -0.58 -28.77 13.52 -3.04 -0.04 -28.81 16
14 N -0.71 -30.05 5.55 -466.77 -2.59 -32.64 16
15 C 0.27 14.85 5.43 85.63 0.46 15.31 16
16 C -0.56 -30.28 9.28 25.60 0.24 -30.04 16
17 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16
18 C 0.00 0.20 5.46 84.66 0.46 0.66 16
19 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16
20 Si 0.98 42.35 29.54 68.60 2.03 44.37 16
21 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16
22 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
24 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16
25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16
27 H 0.06 1.02 6.05 -2.38 -0.01 1.01 16
28 H 0.09 1.48 5.74 -2.39 -0.01 1.47 16
29 H 0.07 1.28 7.07 -2.39 -0.02 1.27 16
30 H 0.05 1.07 7.39 -2.38 -0.02 1.05 16
31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.39 2.12 9.12 -74.06 -0.68 1.45 16
34 H 0.08 1.48 6.05 -2.39 -0.01 1.46 16
35 H 0.08 1.58 7.30 -2.39 -0.02 1.56 16
36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
38 H 0.03 0.95 8.02 -2.39 -0.02 0.93 16
39 H 0.08 3.02 5.97 -2.38 -0.01 3.01 16
40 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16
41 H 0.09 2.21 5.59 -2.39 -0.01 2.19 16
42 H 0.41 14.19 8.32 -92.71 -0.77 13.42 16
43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
44 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16
45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16
Total: -1.00 -71.53 345.84 -1.86 -73.39
By element:
Atomic # 1 Polarization: 24.64 SS G_CDS: -0.45 Total: 24.18 kcal
Atomic # 6 Polarization: -1.33 SS G_CDS: 4.45 Total: 3.12 kcal
Atomic # 7 Polarization: -100.66 SS G_CDS: -6.41 Total: -107.07 kcal
Atomic # 8 Polarization: -36.53 SS G_CDS: -1.48 Total: -38.00 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal
Total: -71.53 -1.86 -73.39 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000769913679.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.411 kcal
(2) G-P(sol) polarization free energy of solvation -71.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.800 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds