Wall clock time and date at job start Tue Mar 31 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00140 * 2 1 4 4 C 1.52997 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.53011 * 109.52035 * 59.87713 * 4 3 2 6 6 C 1.53119 * 109.52508 * 179.97438 * 4 3 2 7 7 C 1.53035 * 109.27871 * 177.56030 * 6 4 3 8 8 N 1.46853 * 109.52676 * 300.82326 * 7 6 4 9 9 C 1.46889 * 111.00065 * 185.83707 * 8 7 6 10 10 C 1.50706 * 109.47109 * 170.00240 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47148 * 179.72251 * 13 12 10 15 15 H 1.08002 * 120.00318 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99922 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99824 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99920 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47212 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46550 * 120.00565 * 18 16 14 21 21 H 1.48492 * 109.47285 * 240.00185 * 18 16 14 22 22 C 1.46846 * 111.19224 * 61.74291 * 8 7 6 23 23 C 1.53042 * 109.52374 * 298.25518 * 22 8 7 24 24 H 1.08997 * 109.46670 * 300.00168 * 1 2 3 25 25 H 1.09000 * 109.46670 * 59.99929 * 1 2 3 26 26 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47107 * 60.00267 * 3 2 1 28 28 H 1.09006 * 109.47171 * 299.99965 * 3 2 1 29 29 H 1.08997 * 109.46824 * 180.12586 * 5 4 3 30 30 H 1.08999 * 109.46548 * 300.12558 * 5 4 3 31 31 H 1.09001 * 109.47183 * 60.12451 * 5 4 3 32 32 H 1.09001 * 109.49570 * 57.62227 * 6 4 3 33 33 H 1.09000 * 109.53845 * 297.52455 * 6 4 3 34 34 H 1.09003 * 109.46463 * 180.81046 * 7 6 4 35 35 H 1.08996 * 109.46506 * 60.84122 * 7 6 4 36 36 H 1.09004 * 109.47256 * 50.00607 * 9 8 7 37 37 H 1.08998 * 109.47820 * 290.00417 * 9 8 7 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 39 39 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 40 40 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 41 41 H 0.97005 * 119.99648 * 179.97438 * 17 16 14 42 42 H 1.08995 * 109.46598 * 58.27286 * 22 8 7 43 43 H 1.09007 * 109.46189 * 178.24635 * 22 8 7 44 44 H 1.09001 * 109.50572 * 299.24197 * 23 22 8 45 45 H 1.09000 * 109.53585 * 179.13988 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9885 0.4225 -1.2464 6 6 4.1596 2.5828 0.0000 7 6 5.6834 2.4560 0.0621 8 7 6.0663 1.7301 1.2799 9 6 7.5259 1.7096 1.4437 10 6 7.8706 1.1792 2.8116 11 8 6.9871 0.8511 3.5749 12 7 9.1604 1.0706 3.1869 13 6 9.4955 0.5544 4.5164 14 6 10.9930 0.5278 4.6822 15 1 11.6315 0.8615 3.8775 16 6 11.5482 0.0774 5.8611 17 7 10.7708 -0.3295 6.8408 18 14 13.4046 0.0437 6.0664 19 1 14.0489 0.5489 4.8274 20 1 13.7916 0.9057 7.2120 21 1 13.8491 -1.3497 6.3231 22 6 5.5176 0.3680 1.2806 23 6 3.9887 0.4325 1.2550 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 5.0750 0.3350 -1.2440 30 1 3.5438 -0.5726 -1.2455 31 1 3.6695 0.9623 -2.1380 32 1 3.8051 3.1398 0.8673 33 1 3.8750 3.1086 -0.9114 34 1 6.1304 3.4501 0.0764 35 1 6.0385 1.9109 -0.8124 36 1 7.9177 2.7212 1.3369 37 1 7.9680 1.0667 0.6827 38 1 9.8671 1.3300 2.5750 39 1 9.0570 1.1997 5.2777 40 1 9.0998 -0.4555 4.6244 41 1 11.1614 -0.6467 7.6701 42 1 5.8733 -0.1674 0.4004 43 1 5.8439 -0.1546 2.1799 44 1 3.6316 0.9557 2.1420 45 1 3.5814 -0.5785 1.2401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773718940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:44 Heat of formation + Delta-G solvation = -114.362662 kcal Electronic energy + Delta-G solvation = -23009.188086 eV Core-core repulsion = 19639.250261 eV Total energy + Delta-G solvation = -3369.937825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18776 -40.07802 -38.38880 -36.16824 -35.43494 -34.32990 -31.79426 -30.65816 -29.08636 -28.26092 -27.23658 -26.03956 -24.39858 -24.09554 -22.51172 -21.31625 -19.31053 -18.90005 -17.54258 -17.34065 -17.17969 -16.91296 -16.68921 -16.43198 -16.18152 -15.71528 -15.43990 -15.21582 -14.87168 -14.42809 -14.37865 -14.14741 -13.93292 -13.67954 -13.08078 -13.01359 -12.89331 -12.82183 -12.74967 -12.49289 -12.46553 -12.31852 -12.21335 -12.02451 -11.45393 -11.44570 -11.28021 -11.18310 -10.80968 -10.58225 -10.49215 -9.78209 -9.14704 -8.29122 -6.45737 1.42955 1.44339 1.57824 1.83384 2.29190 2.48990 2.87628 3.05740 3.10130 3.74459 3.78518 3.93473 4.04250 4.26940 4.28012 4.33037 4.36780 4.45299 4.47816 4.53993 4.56484 4.63483 4.68333 4.77761 4.81464 4.86100 4.86809 5.00369 5.07492 5.12142 5.16779 5.19248 5.25149 5.31738 5.35818 5.50780 5.54199 5.72727 5.85907 6.04393 6.24751 6.29609 6.66267 6.98239 7.24172 7.56966 8.83429 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.038209 B = 0.002809 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.627185 B = 9965.052401 C =10380.468237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.074 3.926 4 C -0.058 4.058 5 C -0.134 4.134 6 C -0.100 4.100 7 C 0.056 3.944 8 N -0.540 5.540 9 C 0.050 3.950 10 C 0.492 3.508 11 O -0.585 6.585 12 N -0.711 5.711 13 C 0.269 3.731 14 C -0.554 4.554 15 H 0.085 0.915 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.056 3.944 23 C -0.091 4.091 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.408 0.592 39 H -0.015 1.015 40 H -0.016 1.016 41 H 0.268 0.732 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 6.197 -21.093 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.003 4.003 4 C -0.058 4.058 5 C -0.191 4.191 6 C -0.138 4.138 7 C -0.071 4.071 8 N -0.266 5.266 9 C -0.081 4.081 10 C 0.279 3.721 11 O -0.465 6.465 12 N -0.362 5.362 13 C 0.146 3.854 14 C -0.591 4.591 15 H 0.103 0.897 16 C -0.198 4.198 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.175 1.175 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.072 4.072 23 C -0.129 4.129 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.100 0.900 38 H 0.244 0.756 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.356 5.984 -19.984 25.903 hybrid contribution 1.070 -0.556 0.209 1.223 sum -14.286 5.428 -19.775 24.992 Atomic orbital electron populations 1.22874 0.79998 1.03470 1.00636 1.87856 1.20910 1.28734 1.95515 1.22601 0.92685 0.84342 1.00655 1.20637 0.93267 0.96445 0.95485 1.21820 1.00778 1.00161 0.96304 1.21580 0.94055 0.94962 1.03174 1.22235 0.96478 0.99035 0.89359 1.61509 1.08659 1.17023 1.39361 1.21932 0.90070 1.04064 0.92045 1.21434 0.82254 0.77972 0.90411 1.90617 1.48417 1.51353 1.56151 1.46194 1.07310 1.64777 1.17907 1.18485 0.95455 0.91690 0.79802 1.21661 0.91128 1.44694 1.01666 0.89716 1.26103 1.04650 0.94041 0.95031 1.70156 1.37874 1.43163 1.05925 0.85093 0.77334 0.77838 0.78834 1.17502 1.20460 1.20500 1.22125 0.95920 0.89173 0.99975 1.21416 0.93679 1.00287 0.97476 0.93878 0.92823 0.89047 0.93609 0.91464 0.92783 0.93112 0.91189 0.91810 0.88491 0.88923 0.93199 0.85235 0.89959 0.75648 0.99746 0.99815 0.92288 0.94324 0.92918 0.93380 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.51 9.42 -148.98 -1.40 -9.91 16 3 C 0.07 1.31 4.81 71.98 0.35 1.65 16 4 C -0.06 -1.14 0.60 -52.10 -0.03 -1.17 16 5 C -0.13 -2.36 7.76 71.99 0.56 -1.80 16 6 C -0.10 -1.68 4.88 30.65 0.15 -1.54 16 7 C 0.06 1.04 5.21 86.32 0.45 1.49 16 8 N -0.54 -15.00 4.40 -900.92 -3.96 -18.96 16 9 C 0.05 1.36 5.45 85.56 0.47 1.82 16 10 C 0.49 20.15 7.50 87.66 0.66 20.81 16 11 O -0.58 -29.93 14.33 -3.03 -0.04 -29.98 16 12 N -0.71 -30.49 5.55 -466.78 -2.59 -33.08 16 13 C 0.27 15.07 5.43 85.63 0.46 15.54 16 14 C -0.55 -30.48 9.28 25.60 0.24 -30.24 16 15 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 18 Si 0.99 42.70 29.54 68.60 2.03 44.73 16 19 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.06 1.69 4.86 86.33 0.42 2.11 16 23 C -0.09 -2.46 4.71 30.65 0.14 -2.31 16 24 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.05 0.98 4.93 -2.39 -0.01 0.96 16 30 H 0.05 1.02 7.68 -2.39 -0.02 1.01 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.43 8.02 -2.39 -0.02 1.41 16 35 H 0.05 0.81 6.52 -2.39 -0.02 0.80 16 36 H 0.13 2.76 7.99 -2.39 -0.02 2.74 16 37 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 38 H 0.41 14.21 8.32 -92.70 -0.77 13.44 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 41 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 42 H 0.04 1.05 6.51 -2.39 -0.02 1.04 16 43 H 0.05 2.08 5.78 -2.38 -0.01 2.06 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.75 7.77 -2.39 -0.02 1.74 16 Total: -1.00 -75.03 351.89 0.08 -74.95 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.19 Total: 20.64 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.57 Total: 8.50 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -6.27 Total: -108.93 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.45 Total: -39.89 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -75.03 0.08 -74.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773718940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.409 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds