Wall clock time and date at job start Tue Mar 31 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54222 * 1 3 3 C 1.52804 * 107.86129 * 2 1 4 4 C 1.53181 * 107.75158 * 118.50251 * 2 1 3 5 5 N 1.47069 * 109.12162 * 169.58064 * 4 2 1 6 6 C 1.46893 * 110.96867 * 174.13936 * 5 4 2 7 7 C 1.50705 * 109.46764 * 293.23212 * 6 5 4 8 8 O 1.21283 * 120.00128 * 353.42381 * 7 6 5 9 9 N 1.34783 * 119.99672 * 173.43190 * 7 6 5 10 10 C 1.46504 * 119.99384 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46770 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99685 * 179.97438 * 11 10 9 14 14 N 1.31502 * 120.00388 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99502 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46811 * 90.00084 * 15 13 11 17 17 H 1.48499 * 109.46942 * 209.99706 * 15 13 11 18 18 H 1.48493 * 109.47295 * 330.00134 * 15 13 11 19 19 C 1.47070 * 109.49060 * 296.96753 * 5 4 2 20 20 C 1.53184 * 109.16023 * 62.95235 * 19 5 4 21 21 C 1.54238 * 107.73235 * 190.58870 * 20 19 5 22 22 C 1.52805 * 109.82382 * 73.36366 * 20 19 5 23 23 O 1.41862 * 110.95694 * 308.77593 * 20 19 5 24 24 H 1.09002 * 109.47288 * 301.49481 * 1 2 3 25 25 H 1.09000 * 109.47616 * 61.49702 * 1 2 3 26 26 H 1.09008 * 109.47054 * 181.50199 * 1 2 3 27 27 H 1.09003 * 109.47575 * 170.65566 * 3 2 1 28 28 H 1.09004 * 109.47301 * 290.65325 * 3 2 1 29 29 H 1.08995 * 109.47411 * 50.65255 * 3 2 1 30 30 H 1.08959 * 109.50260 * 289.45203 * 4 2 1 31 31 H 1.08952 * 109.50618 * 49.69737 * 4 2 1 32 32 H 1.08999 * 109.47347 * 53.22749 * 6 5 4 33 33 H 1.08998 * 109.47381 * 173.23040 * 6 5 4 34 34 H 0.96995 * 120.00194 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47082 * 299.99528 * 10 9 7 36 36 H 1.08995 * 109.47174 * 59.99744 * 10 9 7 37 37 H 0.97007 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.08951 * 109.53162 * 303.06172 * 19 5 4 39 39 H 1.08968 * 109.51444 * 182.81958 * 19 5 4 40 40 H 1.09006 * 109.46635 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47092 * 299.98719 * 21 20 19 42 42 H 1.08991 * 109.47458 * 59.99511 * 21 20 19 43 43 H 1.09000 * 109.47476 * 302.56985 * 22 20 19 44 44 H 1.09007 * 109.47139 * 62.56553 * 22 20 19 45 45 H 1.08998 * 109.47030 * 182.56656 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5422 0.0000 0.0000 3 6 2.0109 1.4544 0.0000 4 6 2.0093 -0.6962 1.2821 5 7 3.4577 -0.9371 1.1992 6 6 3.9739 -1.4773 2.4639 7 6 3.8610 -0.4294 3.5410 8 8 3.5089 0.6961 3.2576 9 7 4.1515 -0.7429 4.8193 10 6 4.0422 0.2761 5.8662 11 6 4.4189 -0.3268 7.1951 12 1 4.7100 -1.3651 7.2539 13 6 4.3917 0.4474 8.3357 14 7 4.0367 1.7115 8.2642 15 14 4.8579 -0.3002 9.9830 16 1 6.3170 -0.1363 10.2057 17 1 4.1115 0.3870 11.0674 18 1 4.5160 -1.7452 9.9854 19 6 3.7399 -1.8513 0.0822 20 6 3.3159 -1.1865 -1.2311 21 6 3.3717 -2.2578 -2.3393 22 6 4.3069 -0.0823 -1.5965 23 8 1.9840 -0.7050 -1.1491 24 1 -0.3634 0.5369 0.8763 25 1 -0.3634 0.4904 -0.9031 26 1 -0.3633 -1.0274 0.0269 27 1 3.0875 1.4893 0.1669 28 1 1.7773 1.9114 -0.9616 29 1 1.5022 2.0001 0.7947 30 1 1.7944 -0.0602 2.1403 31 1 1.4875 -1.6464 1.3908 32 1 3.3930 -2.3547 2.7483 33 1 5.0195 -1.7588 2.3389 34 1 4.4328 -1.6430 5.0460 35 1 4.7138 1.1040 5.6390 36 1 3.0166 0.6421 5.9113 37 1 4.0172 2.2561 9.0668 38 1 3.1811 -2.7766 0.2187 39 1 4.8071 -2.0697 0.0513 40 1 3.0738 -1.8137 -3.2892 41 1 4.3879 -2.6434 -2.4211 42 1 2.6924 -3.0732 -2.0910 43 1 4.3599 0.6420 -0.7837 44 1 5.2927 -0.5181 -1.7595 45 1 3.9752 0.4169 -2.5069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785521650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:24 Heat of formation + Delta-G solvation = -84.085132 kcal Electronic energy + Delta-G solvation = -23805.724702 eV Core-core repulsion = 20437.099809 eV Total energy + Delta-G solvation = -3368.624893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37284 -38.64944 -35.55383 -35.15243 -34.09021 -32.34177 -31.52716 -28.66286 -27.73612 -26.76941 -26.62843 -26.49445 -23.34626 -21.93465 -21.64643 -19.63696 -18.52743 -17.23382 -16.43032 -16.17362 -15.64217 -15.17680 -15.11312 -14.77765 -14.54651 -14.28738 -14.17329 -13.56673 -13.40098 -12.94459 -12.68216 -12.61422 -12.34879 -12.11575 -12.07264 -12.01677 -11.94797 -11.83059 -11.82705 -11.67774 -11.26402 -10.99245 -10.90144 -10.80469 -10.51836 -10.32638 -10.09241 -9.59216 -9.41053 -8.96032 -8.74277 -8.28887 -7.86887 -6.18045 -4.25038 3.22871 3.28904 3.31134 3.37449 3.38234 3.67647 4.22376 4.39668 4.67146 4.80714 4.83045 4.92898 5.07794 5.17605 5.18158 5.28548 5.37626 5.43996 5.45431 5.47109 5.57275 5.58749 5.65053 5.73992 5.75619 5.83401 5.89769 5.98754 6.01225 6.03626 6.10165 6.24705 6.31266 6.62645 6.88810 6.97394 7.30945 7.43998 7.50941 7.65501 7.66349 7.95910 8.62615 8.77897 9.11484 9.41882 10.92097 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.003434 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.263646 B = 8152.143165 C = 8533.964857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 C -0.162 4.162 4 C 0.023 3.977 5 N -0.506 5.506 6 C 0.032 3.968 7 C 0.498 3.502 8 O -0.536 6.536 9 N -0.715 5.715 10 C 0.252 3.748 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.024 3.976 20 C 0.132 3.868 21 C -0.141 4.141 22 C -0.168 4.168 23 O -0.378 6.378 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.389 0.611 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -8.371 -18.900 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.094 3.906 3 C -0.219 4.219 4 C -0.105 4.105 5 N -0.230 5.230 6 C -0.099 4.099 7 C 0.282 3.718 8 O -0.413 6.413 9 N -0.365 5.365 10 C 0.131 3.869 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.105 4.105 20 C 0.092 3.908 21 C -0.199 4.199 22 C -0.226 4.226 23 O -0.298 6.298 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.221 0.779 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.483 -6.936 -19.180 20.546 hybrid contribution 0.271 -1.554 1.577 2.230 sum -2.212 -8.490 -17.603 19.668 Atomic orbital electron populations 1.22117 0.92990 1.02291 1.02545 1.21370 0.93633 0.91736 0.83838 1.22264 1.03582 0.94812 1.01281 1.23043 0.87253 0.99945 1.00224 1.62244 1.14368 1.43984 1.02363 1.22082 1.01941 0.95927 0.89934 1.20256 0.78832 0.89194 0.83560 1.90647 1.46888 1.21790 1.81987 1.46469 1.67028 1.15554 1.07424 1.19074 0.97523 0.86728 0.83546 1.21229 1.47735 0.97332 0.91918 0.91954 1.24949 0.94858 0.94771 0.99420 1.69968 1.46483 1.06302 1.29492 0.86422 0.78565 0.79178 0.82786 1.20448 1.20996 1.19768 1.22967 1.01811 0.94055 0.91634 1.21335 0.82784 0.93256 0.93410 1.22114 1.01907 0.97723 0.98161 1.22337 0.98244 0.99582 1.02406 1.86935 1.27901 1.73601 1.41331 0.90941 0.91805 0.92422 0.90733 0.92939 0.91604 0.87853 0.94756 0.92564 0.88170 0.77881 0.95561 0.95648 0.92438 0.94149 0.89738 0.91728 0.91258 0.92282 0.90664 0.92083 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.61 37.80 0.33 -1.30 16 2 C 0.13 1.79 1.08 -89.99 -0.10 1.69 16 3 C -0.16 -2.26 8.19 37.06 0.30 -1.96 16 4 C 0.02 0.34 3.88 -3.64 -0.01 0.33 16 5 N -0.51 -7.22 3.96 -235.63 -0.93 -8.16 16 6 C 0.03 0.46 5.43 -4.98 -0.03 0.44 16 7 C 0.50 9.70 7.35 -10.98 -0.08 9.62 16 8 O -0.54 -12.45 14.76 5.55 0.08 -12.37 16 9 N -0.72 -14.78 5.55 -61.46 -0.34 -15.12 16 10 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 11 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -25.99 13.28 55.43 0.74 -25.26 16 15 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.02 0.27 4.23 -3.64 -0.02 0.26 16 20 C 0.13 1.50 1.08 -89.98 -0.10 1.40 16 21 C -0.14 -1.25 8.62 37.81 0.33 -0.92 16 22 C -0.17 -1.86 8.24 37.06 0.31 -1.56 16 23 O -0.38 -5.00 9.17 -35.21 -0.32 -5.32 16 24 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.07 1.17 5.82 -51.93 -0.30 0.86 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.10 1.79 6.05 -51.95 -0.31 1.48 16 31 H 0.03 0.48 8.02 -51.96 -0.42 0.06 16 32 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.10 1.23 8.02 -51.93 -0.42 0.81 16 34 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.04 0.45 8.02 -51.96 -0.42 0.03 16 39 H 0.08 0.85 7.98 -51.95 -0.41 0.44 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.99 5.78 -51.93 -0.30 0.69 16 44 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.44 354.10 -7.92 -39.36 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.94 Total: 4.53 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 0.48 Total: 1.27 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.54 Total: -48.53 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.24 Total: -17.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.44 -7.92 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785521650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.721 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds