Wall clock time and date at job start Tue Mar 31 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54222 * 1 3 3 C 1.52804 * 107.86129 * 2 1 4 4 C 1.53181 * 107.75158 * 118.50251 * 2 1 3 5 5 N 1.47069 * 109.12162 * 169.58064 * 4 2 1 6 6 C 1.46893 * 110.96867 * 174.13936 * 5 4 2 7 7 C 1.50705 * 109.46764 * 293.23212 * 6 5 4 8 8 O 1.21283 * 120.00128 * 353.42381 * 7 6 5 9 9 N 1.34783 * 119.99672 * 173.43190 * 7 6 5 10 10 C 1.46504 * 119.99384 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46770 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99685 * 179.97438 * 11 10 9 14 14 N 1.31502 * 120.00388 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99502 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46811 * 90.00084 * 15 13 11 17 17 H 1.48499 * 109.46942 * 209.99706 * 15 13 11 18 18 H 1.48493 * 109.47295 * 330.00134 * 15 13 11 19 19 C 1.47070 * 109.49060 * 296.96753 * 5 4 2 20 20 C 1.53184 * 109.16023 * 62.95235 * 19 5 4 21 21 C 1.54238 * 107.73235 * 190.58870 * 20 19 5 22 22 C 1.52805 * 109.82382 * 73.36366 * 20 19 5 23 23 O 1.41862 * 110.95694 * 308.77593 * 20 19 5 24 24 H 1.09002 * 109.47288 * 301.49481 * 1 2 3 25 25 H 1.09000 * 109.47616 * 61.49702 * 1 2 3 26 26 H 1.09008 * 109.47054 * 181.50199 * 1 2 3 27 27 H 1.09003 * 109.47575 * 170.65566 * 3 2 1 28 28 H 1.09004 * 109.47301 * 290.65325 * 3 2 1 29 29 H 1.08995 * 109.47411 * 50.65255 * 3 2 1 30 30 H 1.08959 * 109.50260 * 289.45203 * 4 2 1 31 31 H 1.08952 * 109.50618 * 49.69737 * 4 2 1 32 32 H 1.08999 * 109.47347 * 53.22749 * 6 5 4 33 33 H 1.08998 * 109.47381 * 173.23040 * 6 5 4 34 34 H 0.96995 * 120.00194 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47082 * 299.99528 * 10 9 7 36 36 H 1.08995 * 109.47174 * 59.99744 * 10 9 7 37 37 H 0.97007 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.08951 * 109.53162 * 303.06172 * 19 5 4 39 39 H 1.08968 * 109.51444 * 182.81958 * 19 5 4 40 40 H 1.09006 * 109.46635 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47092 * 299.98719 * 21 20 19 42 42 H 1.08991 * 109.47458 * 59.99511 * 21 20 19 43 43 H 1.09000 * 109.47476 * 302.56985 * 22 20 19 44 44 H 1.09007 * 109.47139 * 62.56553 * 22 20 19 45 45 H 1.08998 * 109.47030 * 182.56656 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5422 0.0000 0.0000 3 6 2.0109 1.4544 0.0000 4 6 2.0093 -0.6962 1.2821 5 7 3.4577 -0.9371 1.1992 6 6 3.9739 -1.4773 2.4639 7 6 3.8610 -0.4294 3.5410 8 8 3.5089 0.6961 3.2576 9 7 4.1515 -0.7429 4.8193 10 6 4.0422 0.2761 5.8662 11 6 4.4189 -0.3268 7.1951 12 1 4.7100 -1.3651 7.2539 13 6 4.3917 0.4474 8.3357 14 7 4.0367 1.7115 8.2642 15 14 4.8579 -0.3002 9.9830 16 1 6.3170 -0.1363 10.2057 17 1 4.1115 0.3870 11.0674 18 1 4.5160 -1.7452 9.9854 19 6 3.7399 -1.8513 0.0822 20 6 3.3159 -1.1865 -1.2311 21 6 3.3717 -2.2578 -2.3393 22 6 4.3069 -0.0823 -1.5965 23 8 1.9840 -0.7050 -1.1491 24 1 -0.3634 0.5369 0.8763 25 1 -0.3634 0.4904 -0.9031 26 1 -0.3633 -1.0274 0.0269 27 1 3.0875 1.4893 0.1669 28 1 1.7773 1.9114 -0.9616 29 1 1.5022 2.0001 0.7947 30 1 1.7944 -0.0602 2.1403 31 1 1.4875 -1.6464 1.3908 32 1 3.3930 -2.3547 2.7483 33 1 5.0195 -1.7588 2.3389 34 1 4.4328 -1.6430 5.0460 35 1 4.7138 1.1040 5.6390 36 1 3.0166 0.6421 5.9113 37 1 4.0172 2.2561 9.0668 38 1 3.1811 -2.7766 0.2187 39 1 4.8071 -2.0697 0.0513 40 1 3.0738 -1.8137 -3.2892 41 1 4.3879 -2.6434 -2.4211 42 1 2.6924 -3.0732 -2.0910 43 1 4.3599 0.6420 -0.7837 44 1 5.2927 -0.5181 -1.7595 45 1 3.9752 0.4169 -2.5069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785521650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:23 Heat of formation + Delta-G solvation = -107.020241 kcal Electronic energy + Delta-G solvation = -23806.719243 eV Core-core repulsion = 20437.099809 eV Total energy + Delta-G solvation = -3369.619434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45638 -40.18498 -36.76034 -36.13551 -35.91528 -34.33495 -32.52436 -30.24005 -28.64691 -28.29449 -27.67784 -27.50471 -24.98899 -23.46265 -22.58845 -21.30002 -19.55316 -18.92357 -17.80109 -17.38170 -17.16310 -16.76495 -16.36999 -16.05849 -15.73783 -15.69783 -15.47877 -14.80278 -14.40410 -14.34600 -14.17765 -13.94803 -13.74190 -13.46589 -13.14666 -13.02857 -12.94304 -12.91453 -12.84193 -12.75425 -12.72706 -12.62539 -12.47672 -12.22965 -11.82349 -11.50099 -11.48662 -11.11868 -10.80167 -10.73224 -10.41802 -9.79047 -9.34988 -8.29508 -6.46136 1.42633 1.44959 1.56105 1.80932 2.22289 2.40043 2.58080 3.00016 3.05430 3.72922 3.82354 3.88314 3.92874 4.05100 4.13665 4.18768 4.33044 4.35229 4.46845 4.60190 4.64716 4.72791 4.73884 4.76085 4.83778 4.91442 4.95429 5.00562 5.02884 5.11324 5.13250 5.23420 5.24954 5.28462 5.39698 5.49256 5.53855 5.69220 5.83028 5.86180 5.96956 6.65325 6.68717 6.96068 7.23692 7.54238 8.82606 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.003434 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.263646 B = 8152.143165 C = 8533.964857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.134 3.866 3 C -0.156 4.156 4 C 0.028 3.972 5 N -0.524 5.524 6 C 0.046 3.954 7 C 0.494 3.506 8 O -0.579 6.579 9 N -0.711 5.711 10 C 0.270 3.730 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.255 1.255 19 C 0.025 3.975 20 C 0.120 3.880 21 C -0.134 4.134 22 C -0.164 4.164 23 O -0.384 6.384 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.407 0.593 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.268 0.732 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -11.465 -19.608 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.094 3.906 3 C -0.213 4.213 4 C -0.101 4.101 5 N -0.249 5.249 6 C -0.084 4.084 7 C 0.280 3.720 8 O -0.459 6.459 9 N -0.362 5.362 10 C 0.147 3.853 11 C -0.594 4.594 12 H 0.102 0.898 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.179 1.179 19 C -0.102 4.102 20 C 0.080 3.920 21 C -0.192 4.192 22 C -0.222 4.222 23 O -0.304 6.304 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.148 0.852 34 H 0.243 0.757 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.633 -10.085 -19.926 22.392 hybrid contribution 0.015 -0.531 1.707 1.788 sum -1.618 -10.616 -18.219 21.149 Atomic orbital electron populations 1.22095 0.91653 1.02923 1.02941 1.21325 0.94714 0.90900 0.83617 1.22191 1.02029 0.95824 1.01292 1.22912 0.88001 0.99666 0.99486 1.62190 1.14002 1.45612 1.03076 1.22012 1.04262 0.94139 0.88031 1.21282 0.76918 0.89846 0.83933 1.90636 1.48363 1.24270 1.82627 1.46194 1.67620 1.15283 1.07067 1.18477 0.94040 0.87160 0.85619 1.21629 1.47399 0.98330 0.92008 0.89827 1.26065 0.94450 0.95061 1.04046 1.70135 1.47800 1.08196 1.30844 0.85166 0.78309 0.78913 0.76887 1.19603 1.21028 1.17874 1.23071 1.03258 0.93670 0.90214 1.21635 0.81952 0.93963 0.94399 1.22092 1.03389 0.96750 0.96956 1.22300 0.99391 0.99140 1.01339 1.86941 1.29147 1.73474 1.40887 0.91139 0.90892 0.91601 0.92762 0.91820 0.92940 0.91402 0.93873 0.89893 0.85160 0.75747 0.99691 0.99664 0.92281 0.93047 0.87708 0.91657 0.89069 0.92049 0.93357 0.90148 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.61 72.40 0.62 -2.48 16 2 C 0.13 3.56 1.08 -10.38 -0.01 3.55 16 3 C -0.16 -4.52 8.19 71.92 0.59 -3.93 16 4 C 0.03 0.81 3.88 86.33 0.34 1.14 16 5 N -0.52 -14.32 3.96 -899.39 -3.56 -17.89 16 6 C 0.05 1.23 5.43 85.56 0.46 1.69 16 7 C 0.49 19.45 7.35 87.66 0.64 20.10 16 8 O -0.58 -28.33 14.76 -3.04 -0.04 -28.37 16 9 N -0.71 -29.62 5.55 -466.76 -2.59 -32.21 16 10 C 0.27 14.82 5.43 85.63 0.46 15.28 16 11 C -0.56 -30.16 9.28 25.60 0.24 -29.92 16 12 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -56.34 13.28 21.45 0.28 -56.06 16 15 Si 0.98 42.19 29.54 68.60 2.03 44.22 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 C 0.03 0.51 4.23 86.33 0.36 0.88 16 20 C 0.12 2.45 1.08 -10.38 -0.01 2.43 16 21 C -0.13 -1.93 8.62 72.40 0.62 -1.31 16 22 C -0.16 -3.38 8.24 71.92 0.59 -2.79 16 23 O -0.38 -9.60 9.17 -148.91 -1.37 -10.97 16 24 H 0.07 1.57 8.13 -2.39 -0.02 1.56 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.05 1.79 5.82 -2.39 -0.01 1.77 16 28 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 30 H 0.07 2.47 6.05 -2.41 -0.01 2.45 16 31 H 0.04 1.15 8.02 -2.41 -0.02 1.13 16 32 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 33 H 0.13 2.73 8.02 -2.39 -0.02 2.71 16 34 H 0.41 13.84 8.32 -92.71 -0.77 13.07 16 35 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 38 H 0.05 0.94 8.02 -2.41 -0.02 0.92 16 39 H 0.10 1.68 7.98 -2.40 -0.02 1.66 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 1.27 5.78 -2.39 -0.01 1.25 16 44 H 0.08 1.31 8.13 -2.38 -0.02 1.29 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.64 354.10 0.32 -71.33 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.19 Total: 24.66 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.38 Total: 5.29 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -5.87 Total: -106.15 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.41 Total: -39.34 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -71.64 0.32 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785521650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.695 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds