Wall clock time and date at job start Tue Mar 31 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46962 * 2 1 4 4 C 1.52998 * 109.47455 * 120.00317 * 2 1 3 5 5 C 1.50702 * 109.46768 * 240.00336 * 2 1 3 6 6 O 1.21276 * 120.00423 * 5.56978 * 5 2 1 7 7 N 1.34778 * 119.99852 * 185.56314 * 5 2 1 8 8 C 1.47080 * 120.88120 * 174.58832 * 7 5 2 9 9 C 1.53701 * 108.27348 * 128.75864 * 8 7 5 10 10 N 1.46896 * 109.25689 * 54.08698 * 9 8 7 11 11 C 1.46900 * 111.00084 * 172.60716 * 10 9 8 12 12 C 1.53000 * 109.47212 * 314.29964 * 11 10 9 13 13 H 1.09001 * 109.47211 * 59.99619 * 12 11 10 14 14 O 1.42898 * 109.46870 * 300.00146 * 12 11 10 15 15 C 1.50699 * 109.47335 * 179.97438 * 12 11 10 16 16 H 1.07996 * 119.99956 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99805 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00106 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99623 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46976 * 60.00385 * 19 17 15 21 21 H 1.48501 * 109.47000 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47159 * 299.99982 * 19 17 15 23 23 C 1.46901 * 111.26768 * 296.75321 * 10 9 8 24 24 C 1.47087 * 120.88222 * 354.87483 * 7 5 2 25 25 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47125 * 59.99628 * 1 2 3 27 27 H 1.09001 * 109.46627 * 299.99334 * 1 2 3 28 28 H 1.09004 * 109.46797 * 76.98799 * 3 2 1 29 29 H 1.09002 * 109.47229 * 196.98725 * 3 2 1 30 30 H 1.08995 * 109.47278 * 316.98684 * 3 2 1 31 31 H 1.09004 * 109.46841 * 66.83037 * 4 2 1 32 32 H 1.08996 * 109.47257 * 186.82949 * 4 2 1 33 33 H 1.08999 * 109.47178 * 306.83205 * 4 2 1 34 34 H 1.08994 * 109.63092 * 248.52713 * 8 7 5 35 35 H 1.09002 * 109.62937 * 9.11111 * 8 7 5 36 36 H 1.08999 * 109.64755 * 294.07550 * 9 8 7 37 37 H 1.09001 * 109.44372 * 173.96106 * 9 8 7 38 38 H 1.09001 * 109.47024 * 74.29629 * 11 10 9 39 39 H 1.09001 * 109.47343 * 194.29664 * 11 10 9 40 40 H 0.96706 * 114.00057 * 299.99739 * 14 12 11 41 41 H 0.97003 * 119.99434 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.49096 * 303.14603 * 23 10 9 43 43 H 1.09001 * 109.49560 * 183.06528 * 23 10 9 44 44 H 1.09001 * 109.62787 * 350.88962 * 24 7 5 45 45 H 1.08998 * 109.62977 * 111.28019 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 8 1.2489 -1.0821 -2.0784 7 7 3.3522 -0.9324 -1.3889 8 6 3.8537 -1.7258 -2.5213 9 6 4.9585 -0.9197 -3.2227 10 7 5.9765 -0.5332 -2.2367 11 6 7.1358 0.0866 -2.8923 12 6 7.5387 -0.7468 -4.1105 13 1 6.7055 -0.7914 -4.8119 14 8 7.8795 -2.0696 -3.6910 15 6 8.7276 -0.1106 -4.7834 16 1 9.1531 0.7975 -4.3826 17 6 9.2722 -0.6880 -5.9108 18 7 8.7538 -1.7936 -6.3992 19 14 10.7456 0.1009 -6.7453 20 1 11.8808 0.1632 -5.7901 21 1 11.1367 -0.7080 -7.9276 22 1 10.3900 1.4750 -7.1820 23 6 5.4144 0.3556 -1.2109 24 6 4.3288 -0.3931 -0.4304 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5137 0.8901 28 1 1.9429 1.8622 1.0013 29 1 3.0877 1.4575 -0.3002 30 1 1.4527 2.0355 -0.7010 31 1 1.7800 -1.7782 1.1901 32 1 3.1232 -0.6167 1.3123 33 1 1.5804 -0.2830 2.1350 34 1 4.2601 -2.6689 -2.1561 35 1 3.0406 -1.9205 -3.2206 36 1 4.5294 -0.0244 -3.6727 37 1 5.4178 -1.5323 -3.9985 38 1 6.8758 1.0956 -3.2123 39 1 7.9690 0.1312 -2.1909 40 1 8.6151 -2.1063 -3.0643 41 1 9.1373 -2.2000 -7.1922 42 1 4.9791 1.2331 -1.6890 43 1 6.2042 0.6674 -0.5274 44 1 3.8299 0.2938 0.2533 45 1 4.7775 -1.2103 0.1342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809570872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:30 Heat of formation + Delta-G solvation = -90.802499 kcal Electronic energy + Delta-G solvation = -24001.495845 eV Core-core repulsion = 20632.579665 eV Total energy + Delta-G solvation = -3368.916180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78789 -39.55850 -37.50415 -36.89768 -35.16849 -34.20626 -32.19447 -30.71433 -28.39892 -28.23208 -28.16714 -25.89240 -25.08951 -23.66426 -22.27133 -21.18396 -19.75535 -19.04483 -17.73419 -17.10866 -16.68669 -16.55122 -16.47917 -16.24602 -15.83148 -15.68338 -15.41629 -15.02204 -14.86456 -14.68566 -14.35260 -13.74238 -13.33286 -13.17762 -13.14267 -13.06744 -12.98255 -12.86240 -12.77282 -12.60804 -12.53796 -12.34367 -12.24620 -12.11274 -12.00518 -11.91203 -11.41925 -10.95933 -10.69232 -10.55551 -10.08893 -9.78261 -9.18679 -8.13651 -6.39394 1.40751 1.42024 1.50184 1.57053 1.93306 2.38162 2.97258 3.13003 3.35519 3.79219 3.90427 3.91122 3.95934 4.06633 4.16966 4.24714 4.26896 4.37121 4.46975 4.57184 4.62367 4.63220 4.70221 4.72325 4.77950 4.81521 4.84346 4.92985 4.96156 5.01464 5.06521 5.07769 5.23863 5.32410 5.34886 5.45659 5.60292 5.74988 5.92024 6.14665 6.21118 6.42903 6.73337 7.10757 7.34918 7.61804 8.90361 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.037950 B = 0.003571 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.628946 B = 7838.591199 C = 8045.937362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.151 4.151 5 C 0.512 3.488 6 O -0.592 6.592 7 N -0.608 5.608 8 C 0.126 3.874 9 C 0.050 3.950 10 N -0.528 5.528 11 C 0.048 3.952 12 C 0.230 3.770 13 H 0.023 0.977 14 O -0.569 6.569 15 C -0.590 4.590 16 H 0.060 0.940 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.959 3.041 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.270 1.270 23 C 0.033 3.967 24 C 0.096 3.904 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.014 0.986 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.080 0.920 40 H 0.355 0.645 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 6.303 18.788 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.210 4.210 4 C -0.208 4.208 5 C 0.303 3.697 6 O -0.472 6.472 7 N -0.340 5.340 8 C 0.002 3.998 9 C -0.079 4.079 10 N -0.253 5.253 11 C -0.080 4.080 12 C 0.173 3.827 13 H 0.040 0.960 14 O -0.372 6.372 15 C -0.628 4.628 16 H 0.078 0.922 17 C -0.177 4.177 18 N -0.536 5.536 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.095 4.095 24 C -0.025 4.025 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.033 0.967 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.098 0.902 40 H 0.200 0.800 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.127 0.873 44 H 0.156 0.844 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.687 5.399 18.042 22.164 hybrid contribution 0.973 0.925 -1.497 2.010 sum -10.715 6.324 16.545 20.701 Atomic orbital electron populations 1.21664 0.91909 1.02017 1.02538 1.20860 0.98030 0.97156 0.92473 1.22206 1.01604 0.92418 1.04816 1.22236 1.03138 0.99951 0.95440 1.21515 0.81286 0.78494 0.88441 1.90642 1.56163 1.54408 1.46019 1.48271 1.06222 1.52448 1.27076 1.21607 0.95230 0.94212 0.88718 1.22426 0.92292 0.98149 0.95025 1.61964 1.06873 1.42355 1.14112 1.22709 0.92677 0.95508 0.97104 1.19266 0.93592 0.80365 0.89517 0.95970 1.86494 1.54498 1.30512 1.65741 1.22035 1.16749 1.11296 1.12715 0.92165 1.25887 0.99714 0.94860 0.97190 1.70210 1.41584 1.19539 1.22257 0.85626 0.79693 0.78390 0.77936 1.18922 1.21224 1.19546 1.22695 0.98141 0.93563 0.95138 1.22715 0.88797 0.99748 0.91218 0.93480 0.93750 0.88996 0.87900 0.91182 0.92745 0.93215 0.89748 0.88672 0.90457 0.90656 0.96731 0.90864 0.95889 0.90172 0.80045 0.93046 0.95363 0.87344 0.84415 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 7.71 71.98 0.55 -1.67 16 2 C -0.08 -1.47 0.75 -52.93 -0.04 -1.51 16 3 C -0.15 -2.11 8.08 71.98 0.58 -1.52 16 4 C -0.15 -1.86 8.00 71.98 0.58 -1.28 16 5 C 0.51 14.33 6.47 87.66 0.57 14.90 16 6 O -0.59 -21.86 15.44 -3.02 -0.05 -21.90 16 7 N -0.61 -16.39 2.99 -817.03 -2.44 -18.83 16 8 C 0.13 4.12 6.64 86.50 0.57 4.69 16 9 C 0.05 1.87 5.06 86.54 0.44 2.30 16 10 N -0.53 -17.87 4.64 -894.31 -4.15 -22.02 16 11 C 0.05 1.87 4.87 86.30 0.42 2.29 16 12 C 0.23 11.52 2.11 29.85 0.06 11.58 16 13 H 0.02 1.28 6.18 -2.39 -0.01 1.26 16 14 O -0.57 -29.05 12.41 -148.98 -1.85 -30.90 16 15 C -0.59 -31.88 8.76 25.60 0.22 -31.66 16 16 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 17 C 0.03 1.45 5.40 84.65 0.46 1.90 16 18 N -0.90 -53.73 12.84 21.45 0.28 -53.45 16 19 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C 0.03 0.80 5.45 86.38 0.47 1.27 16 24 C 0.10 1.90 4.05 86.35 0.35 2.25 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.95 8.04 -2.39 -0.02 0.93 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 0.77 8.03 -2.38 -0.02 0.75 16 29 H 0.07 1.00 4.92 -2.39 -0.01 0.99 16 30 H 0.05 0.87 8.02 -2.39 -0.02 0.85 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.08 0.86 4.73 -2.39 -0.01 0.85 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.08 2.68 7.04 -2.39 -0.02 2.66 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 3.27 5.58 -2.39 -0.01 3.25 16 38 H 0.02 0.91 8.08 -2.39 -0.02 0.89 16 39 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.36 16.13 9.04 -74.05 -0.67 15.46 16 41 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.03 0.72 8.04 -2.39 -0.02 0.71 16 43 H 0.11 2.14 8.11 -2.39 -0.02 2.12 16 44 H 0.14 1.83 2.77 -2.39 -0.01 1.82 16 45 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 Total: -1.00 -71.00 342.20 -0.64 -71.64 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.31 Total: 26.89 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.24 Total: 3.55 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -6.32 Total: -94.30 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.89 Total: -52.80 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -71.00 -0.64 -71.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809570872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.159 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds