Wall clock time and date at job start Tue Mar 31 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46844 * 2 1 4 4 C 1.52999 * 109.46927 * 119.99951 * 2 1 3 5 5 H 1.09002 * 109.58611 * 300.17751 * 4 2 1 6 6 C 1.54277 * 109.52571 * 180.02562 * 4 2 1 7 7 N 1.40446 * 111.68795 * 162.87548 * 6 4 2 8 8 C 1.46898 * 111.00008 * 188.30182 * 7 6 4 9 9 C 1.50706 * 109.46930 * 170.00391 * 8 7 6 10 10 O 1.21284 * 120.00101 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99833 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99731 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47006 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.47635 * 114.31162 * 61.81174 * 7 6 4 22 22 C 1.50903 * 108.77105 * 279.99876 * 21 7 6 23 23 C 1.53622 * 111.71452 * 91.01113 * 22 21 7 24 24 O 1.40625 * 109.52833 * 60.35852 * 4 2 1 25 25 H 1.08997 * 109.47843 * 299.99940 * 1 2 3 26 26 H 1.09007 * 109.46834 * 60.00371 * 1 2 3 27 27 H 1.08999 * 109.46812 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47190 * 240.00434 * 2 1 3 29 29 H 1.09000 * 109.47268 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47275 * 300.00122 * 3 2 1 31 31 H 1.09003 * 109.46757 * 59.99869 * 3 2 1 32 32 H 1.09005 * 109.03834 * 42.31292 * 6 4 2 33 33 H 1.08998 * 108.98227 * 283.40789 * 6 4 2 34 34 H 1.08998 * 109.47306 * 50.00741 * 8 7 6 35 35 H 1.08993 * 109.47084 * 289.99733 * 8 7 6 36 36 H 0.96989 * 120.00264 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47068 * 60.00448 * 12 11 9 38 38 H 1.08993 * 109.47068 * 299.99902 * 12 11 9 39 39 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 40 40 H 1.08994 * 109.59025 * 39.78554 * 21 7 6 41 41 H 1.09003 * 109.58594 * 160.21851 * 21 7 6 42 42 H 1.08999 * 109.03019 * 330.43529 * 22 21 7 43 43 H 1.08994 * 108.97211 * 211.54867 * 22 21 7 44 44 H 1.08996 * 108.86027 * 197.84762 * 23 22 21 45 45 H 1.09002 * 108.78384 * 79.37577 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6750 -0.2107 2.1405 6 6 3.5827 -0.7214 1.2509 7 7 4.1004 -1.0125 2.5236 8 6 5.5559 -0.8169 2.5573 9 6 6.0406 -0.8972 3.9820 10 8 5.2513 -1.0971 4.8808 11 7 7.3514 -0.7468 4.2573 12 6 7.8225 -0.8242 5.6424 13 6 9.3159 -0.6250 5.6768 14 1 9.8596 -0.4570 4.7588 15 6 9.9879 -0.6561 6.8803 16 7 9.3259 -0.8602 7.9981 17 14 11.8389 -0.4084 6.9230 18 1 12.3166 -0.4870 8.3270 19 1 12.1731 0.9245 6.3599 20 1 12.4988 -1.4661 6.1162 21 6 3.7337 -2.3467 3.0383 22 6 2.3320 -2.2846 3.5938 23 6 1.2824 -2.6359 2.5285 24 8 1.5786 -2.0497 1.2463 25 1 -0.3635 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.9388 0.2603 0.9384 33 1 3.9379 -1.4702 0.5429 34 1 5.8006 0.1619 2.1449 35 1 6.0405 -1.5926 1.9645 36 1 7.9827 -0.5872 3.5385 37 1 7.5773 -1.8027 6.0553 38 1 7.3383 -0.0481 6.2348 39 1 8.3646 -0.9884 7.9760 40 1 3.7737 -3.0747 2.2281 41 1 4.4270 -2.6370 3.8278 42 1 2.1403 -1.2771 3.9630 43 1 2.2474 -2.9883 4.4218 44 1 0.3082 -2.2788 2.8624 45 1 1.2418 -3.7197 2.4198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815316293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:01 Heat of formation + Delta-G solvation = -88.899982 kcal Electronic energy + Delta-G solvation = -23370.811450 eV Core-core repulsion = 20001.977769 eV Total energy + Delta-G solvation = -3368.833681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27275 -38.80060 -36.29823 -35.58197 -34.36142 -32.51536 -32.11449 -29.50844 -27.62437 -26.90276 -26.27833 -25.20317 -22.66475 -21.71432 -20.83729 -20.22344 -19.60348 -17.48418 -17.02628 -16.57235 -16.20386 -15.49653 -15.16457 -15.01453 -14.78033 -14.42535 -14.07463 -13.90927 -13.73404 -13.18384 -13.09020 -12.62509 -12.45855 -12.33798 -12.27656 -12.18356 -12.10514 -11.69966 -11.47895 -11.24448 -11.15407 -11.02861 -10.83305 -10.80679 -10.65855 -10.32495 -10.17526 -9.50199 -9.11452 -8.79990 -8.69404 -8.18104 -7.99276 -6.53471 -4.27161 3.26780 3.36137 3.38049 3.49008 3.57106 3.70904 4.21860 4.44649 4.53151 4.69352 4.83940 4.91058 4.99070 5.10019 5.20131 5.22683 5.25469 5.29380 5.38157 5.42061 5.42965 5.50592 5.51773 5.55627 5.65247 5.71867 5.77308 5.81527 5.87984 5.93096 6.09676 6.13695 6.21286 6.31116 6.92770 7.04500 7.20382 7.24829 7.31440 7.44809 7.64647 8.24817 8.45486 8.69733 8.98073 9.46728 10.86693 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.033878 B = 0.003096 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.293445 B = 9043.170441 C = 9552.927937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.149 4.149 4 C 0.104 3.896 5 H 0.068 0.932 6 C 0.045 3.955 7 N -0.538 5.538 8 C 0.042 3.958 9 C 0.498 3.502 10 O -0.539 6.539 11 N -0.710 5.710 12 C 0.242 3.758 13 C -0.624 4.624 14 H 0.057 0.943 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 1.075 2.925 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.287 1.287 21 C 0.066 3.934 22 C -0.147 4.147 23 C 0.064 3.936 24 O -0.385 6.385 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.392 0.608 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.272 0.728 40 H 0.035 0.965 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.937 0.384 -17.099 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.206 4.206 4 C 0.045 3.955 5 H 0.086 0.914 6 C -0.084 4.084 7 N -0.262 5.262 8 C -0.088 4.088 9 C 0.282 3.718 10 O -0.417 6.417 11 N -0.359 5.359 12 C 0.121 3.879 13 C -0.662 4.662 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.536 5.536 17 Si 0.903 3.097 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.060 4.060 22 C -0.185 4.185 23 C -0.012 4.012 24 O -0.304 6.304 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.225 0.775 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.423 0.521 -15.263 21.006 hybrid contribution -0.582 -0.393 -1.656 1.799 sum -15.005 0.129 -16.919 22.614 Atomic orbital electron populations 1.21752 0.94677 1.02211 1.01359 1.21149 0.96400 0.95734 0.97743 1.21919 1.01386 0.95179 1.02120 1.21972 0.91895 0.83446 0.98204 0.91390 1.21730 0.96126 1.01194 0.89383 1.58716 1.09968 1.30806 1.26701 1.21927 0.88520 1.02758 0.95640 1.20375 0.83018 0.77903 0.90478 1.90631 1.54431 1.48940 1.47703 1.46283 1.06782 1.71048 1.11809 1.19133 0.94939 0.96337 0.77522 1.22068 0.91674 1.56195 0.96264 0.92510 1.25880 1.07248 0.93548 0.91671 1.70761 1.10752 1.43634 1.28477 0.83452 0.73529 0.76502 0.76252 1.20542 1.21264 1.21295 1.21843 0.97358 0.87485 0.99312 1.21917 0.94522 1.03834 0.98277 1.22979 0.96802 0.97940 0.83461 1.87421 1.85826 1.27785 1.29385 0.92964 0.92800 0.92016 0.90636 0.92065 0.92285 0.92321 0.89894 0.95485 0.88401 0.92402 0.77548 0.96673 0.96565 0.91701 0.94659 0.88779 0.90189 0.90443 0.93383 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.05 37.16 0.34 -0.86 16 2 C -0.09 -0.83 2.72 -90.62 -0.25 -1.08 16 3 C -0.15 -1.19 8.90 37.16 0.33 -0.86 16 4 C 0.10 1.16 1.81 -26.06 -0.05 1.11 16 5 H 0.07 0.83 7.11 -51.93 -0.37 0.46 16 6 C 0.05 0.54 4.45 -6.50 -0.03 0.51 16 7 N -0.54 -7.75 3.88 -241.02 -0.94 -8.69 16 8 C 0.04 0.61 5.46 -4.97 -0.03 0.58 16 9 C 0.50 9.76 7.28 -10.98 -0.08 9.68 16 10 O -0.54 -12.48 14.29 5.55 0.08 -12.40 16 11 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16 12 C 0.24 6.36 4.74 -5.19 -0.02 6.34 16 13 C -0.62 -17.11 9.28 -34.44 -0.32 -17.43 16 14 H 0.06 1.47 7.60 -52.48 -0.40 1.07 16 15 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 16 N -0.90 -27.30 13.65 55.43 0.76 -26.55 16 17 Si 1.08 24.33 29.90 -169.99 -5.08 19.25 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.07 0.98 4.67 -4.47 -0.02 0.96 16 22 C -0.15 -1.91 5.41 -27.46 -0.15 -2.06 16 23 C 0.06 0.70 6.72 37.48 0.25 0.96 16 24 O -0.39 -4.66 9.09 -34.27 -0.31 -4.98 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.48 6.09 -51.93 -0.32 0.17 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.88 5.39 -51.93 -0.28 0.60 16 33 H 0.03 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.10 1.21 7.85 -51.93 -0.41 0.80 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 37 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 38 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 39 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 40 H 0.04 0.50 7.64 -51.93 -0.40 0.10 16 41 H 0.09 1.64 5.58 -51.93 -0.29 1.36 16 42 H 0.08 1.16 7.39 -51.93 -0.38 0.77 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -32.09 348.89 -8.43 -40.51 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.73 Total: 4.40 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -0.12 Total: -1.61 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.52 Total: -50.43 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.23 Total: -17.37 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.09 -8.43 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815316293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.386 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds