Wall clock time and date at job start Tue Mar 31 2020 03:11:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86799 * 119.99728 * 2 1
4 4 H 1.48505 * 109.47378 * 270.00138 * 3 2 1
5 5 H 1.48499 * 109.47251 * 30.00333 * 3 2 1
6 6 H 1.48504 * 109.46941 * 150.00027 * 3 2 1
7 7 C 1.37878 * 119.99930 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99672 * 179.97438 * 7 2 1
9 9 C 1.50696 * 120.00435 * 359.97438 * 7 2 1
10 10 O 1.42904 * 110.76379 * 56.79588 * 9 7 2
11 11 C 1.55143 * 110.70257 * 293.60129 * 9 7 2
12 12 C 1.54911 * 101.64927 * 205.96029 * 11 9 7
13 13 N 1.47846 * 104.79662 * 37.07088 * 12 11 9
14 14 C 1.46901 * 110.99716 * 213.63670 * 13 12 11
15 15 C 1.53000 * 109.46818 * 290.83849 * 14 13 12
16 16 H 1.09002 * 109.47398 * 305.00447 * 15 14 13
17 17 O 1.42896 * 109.47231 * 65.00513 * 15 14 13
18 18 C 1.52997 * 109.47060 * 185.00277 * 15 14 13
19 19 N 1.46894 * 109.47515 * 180.02562 * 18 15 14
20 20 C 1.48542 * 110.99968 * 52.60297 * 19 18 15
21 21 C 1.54931 * 103.22694 * 159.72119 * 20 19 18
22 22 C 1.54599 * 102.92476 * 322.58603 * 21 20 19
23 23 C 1.47903 * 111.00089 * 169.99840 * 19 18 15
24 24 C 1.47440 * 108.56542 * 335.90275 * 13 12 11
25 25 H 0.97001 * 120.00500 * 359.97438 * 1 2 3
26 26 H 0.96698 * 114.00588 * 303.20552 * 10 9 7
27 27 H 1.08995 * 110.99023 * 324.05426 * 11 9 7
28 28 H 1.09005 * 110.99007 * 87.83520 * 11 9 7
29 29 H 1.09000 * 110.37092 * 278.24011 * 12 11 9
30 30 H 1.09003 * 110.37166 * 155.90208 * 12 11 9
31 31 H 1.09002 * 109.46747 * 170.84330 * 14 13 12
32 32 H 1.08991 * 109.47315 * 50.84397 * 14 13 12
33 33 H 0.96708 * 114.00101 * 59.99127 * 17 15 14
34 34 H 1.09002 * 109.47153 * 300.00319 * 18 15 14
35 35 H 1.08998 * 109.47533 * 59.99948 * 18 15 14
36 36 H 1.08999 * 110.66829 * 278.16218 * 20 19 18
37 37 H 1.09005 * 110.66356 * 41.28669 * 20 19 18
38 38 H 1.08997 * 110.72506 * 204.22832 * 21 20 19
39 39 H 1.09001 * 110.87920 * 81.01712 * 21 20 19
40 40 H 1.08997 * 110.30774 * 263.03983 * 22 21 20
41 41 H 1.09001 * 110.38904 * 140.91687 * 22 21 20
42 42 H 1.08994 * 109.91868 * 333.51091 * 23 19 18
43 43 H 1.09000 * 109.91476 * 94.61275 * 23 19 18
44 44 H 1.09002 * 109.89272 * 120.39582 * 24 13 12
45 45 H 1.09001 * 109.89023 * 241.42554 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4965 2.0466 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 8 0.3636 -2.5719 -1.1183
11 6 0.4742 -2.6840 1.3296
12 6 0.3738 -4.2271 1.4214
13 7 1.6624 -4.7215 0.8914
14 6 1.4857 -5.9955 0.1816
15 6 1.1371 -7.0951 1.1867
16 1 1.9008 -7.1327 1.9636
17 8 -0.1321 -6.8136 1.7797
18 6 1.0756 -8.4435 0.4664
19 7 0.7404 -9.4993 1.4312
20 6 -0.4849 -9.1522 2.1958
21 6 -0.9682 -10.5229 2.7322
22 6 -0.6541 -11.4826 1.5616
23 6 0.4379 -10.7717 0.7407
24 6 2.2283 -3.6934 -0.0012
25 1 -0.4851 0.8400 0.0004
26 1 -0.2714 -1.8440 -1.1644
27 1 1.0372 -2.2786 2.1702
28 1 -0.5153 -2.2306 1.2701
29 1 -0.4524 -4.5906 0.8104
30 1 0.2456 -4.5380 2.4583
31 1 2.4099 -6.2549 -0.3348
32 1 0.6788 -5.8979 -0.5446
33 1 -0.8606 -6.7652 1.1455
34 1 0.3120 -8.4060 -0.3105
35 1 2.0437 -8.6584 0.0140
36 1 -0.2468 -8.4790 3.0193
37 1 -1.2349 -8.7094 1.5402
38 1 -2.0386 -10.5015 2.9366
39 1 -0.4122 -10.8087 3.6251
40 1 -1.5438 -11.6396 0.9519
41 1 -0.2829 -12.4350 1.9404
42 1 0.0732 -10.5701 -0.2664
43 1 1.3337 -11.3910 0.6941
44 1 3.2026 -3.3754 0.3702
45 1 2.3287 -4.0930 -1.0103
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000829974928.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:11:42
Heat of formation + Delta-G solvation = -87.853840 kcal
Electronic energy + Delta-G solvation = -23729.476149 eV
Core-core repulsion = 20360.687833 eV
Total energy + Delta-G solvation = -3368.788317 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-39.63024 -38.37596 -36.65147 -34.35185 -32.52804 -32.06344 -30.55999 -28.89765
-28.10559 -27.91412 -25.06516 -23.63081 -21.75201 -21.00778 -20.87690 -20.11359
-19.38876 -17.12207 -16.58870 -16.44214 -15.72343 -15.35552 -14.90005 -14.79345
-14.42905 -14.10012 -13.96872 -13.56944 -13.23393 -13.06481 -12.50396 -12.32622
-12.14631 -11.89711 -11.74758 -11.57573 -11.39582 -11.33389 -11.21966 -11.01547
-10.87353 -10.70710 -10.64972 -10.53184 -10.43270 -10.30035 -9.91986 -9.37215
-9.21526 -8.60133 -8.50999 -8.06614 -7.60227 -6.20193 -4.26952 3.23510
3.30533 3.34357 3.82281 4.31076 4.39300 4.51783 4.58483 4.69314
4.80804 5.06609 5.13150 5.17038 5.19262 5.34898 5.43516 5.52351
5.56458 5.62535 5.64775 5.71434 5.77725 5.86783 5.90327 6.03926
6.17557 6.20434 6.22643 6.31668 6.35956 6.48303 6.68782 6.80654
6.93368 6.97792 7.16144 7.46291 7.52144 7.71725 7.72639 7.82315
7.86025 8.16207 8.74326 9.40718 9.52725 10.87077
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.049546 B = 0.003241 C = 0.003175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 564.997206 B = 8637.628036 C = 8818.146353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.069 3.931
3 Si 0.901 3.099
4 H -0.280 1.280
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.531 4.531
8 H 0.062 0.938
9 C 0.236 3.764
10 O -0.594 6.594
11 C -0.135 4.135
12 C 0.056 3.944
13 N -0.525 5.525
14 C 0.024 3.976
15 C 0.116 3.884
16 H 0.112 0.888
17 O -0.550 6.550
18 C 0.016 3.984
19 N -0.515 5.515
20 C 0.048 3.952
21 C -0.132 4.132
22 C -0.131 4.131
23 C 0.033 3.967
24 C 0.057 3.943
25 H 0.267 0.733
26 H 0.383 0.617
27 H 0.061 0.939
28 H 0.070 0.930
29 H 0.031 0.969
30 H 0.069 0.931
31 H 0.074 0.926
32 H 0.034 0.966
33 H 0.364 0.636
34 H 0.035 0.965
35 H 0.083 0.917
36 H 0.101 0.899
37 H 0.042 0.958
38 H 0.067 0.933
39 H 0.071 0.929
40 H 0.063 0.937
41 H 0.068 0.932
42 H 0.041 0.959
43 H 0.075 0.925
44 H 0.078 0.922
45 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.240 -18.158 2.015 18.406
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.133 4.133
3 Si 0.728 3.272
4 H -0.206 1.206
5 H -0.211 1.211
6 H -0.197 1.197
7 C -0.569 4.569
8 H 0.080 0.920
9 C 0.196 3.804
10 O -0.404 6.404
11 C -0.174 4.174
12 C -0.071 4.071
13 N -0.249 5.249
14 C -0.106 4.106
15 C 0.056 3.944
16 H 0.129 0.871
17 O -0.355 6.355
18 C -0.113 4.113
19 N -0.239 5.239
20 C -0.079 4.079
21 C -0.170 4.170
22 C -0.169 4.169
23 C -0.095 4.095
24 C -0.071 4.071
25 H 0.077 0.923
26 H 0.235 0.765
27 H 0.080 0.920
28 H 0.089 0.911
29 H 0.049 0.951
30 H 0.087 0.913
31 H 0.092 0.908
32 H 0.052 0.948
33 H 0.212 0.788
34 H 0.053 0.947
35 H 0.102 0.898
36 H 0.119 0.881
37 H 0.060 0.940
38 H 0.086 0.914
39 H 0.090 0.910
40 H 0.082 0.918
41 H 0.087 0.913
42 H 0.059 0.941
43 H 0.094 0.906
44 H 0.097 0.903
45 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -0.880 -18.723 3.181 19.012
hybrid contribution -1.379 1.654 -1.841 2.833
sum -2.259 -17.070 1.340 17.271
Atomic orbital electron populations
1.69589 1.05982 1.27414 1.51034 1.25012 0.94994 0.99486 0.93787
0.86454 0.79876 0.82663 0.78175 1.20563 1.21107 1.19737 1.21623
0.93589 0.90723 1.51000 0.91992 1.19711 0.86214 0.91709 0.82800
1.86057 1.51429 1.53259 1.49678 1.23210 1.01609 0.92138 1.00428
1.23018 0.88927 0.96275 0.98880 1.63633 1.25102 1.02266 1.33879
1.22850 1.00705 0.92001 0.95043 1.21945 0.86506 0.89869 0.96071
0.87057 1.86741 1.17140 1.93751 1.37890 1.22981 1.01563 0.92820
0.93934 1.64789 1.34138 1.02116 1.22850 1.23381 0.90161 0.95836
0.98525 1.22615 1.00749 0.95515 0.98158 1.22388 0.98171 0.99081
0.97303 1.22894 0.98423 0.92102 0.96045 1.22852 0.98721 0.91582
0.93905 0.92327 0.76519 0.91996 0.91133 0.95075 0.91275 0.90803
0.94812 0.78824 0.94685 0.89831 0.88100 0.93988 0.91397 0.91021
0.91835 0.91295 0.94109 0.90624 0.90345 0.93814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.21 10.69 55.43 0.59 -23.62 16
2 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16
3 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16
4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16
6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16
7 C -0.53 -14.37 8.21 -34.44 -0.28 -14.65 16
8 H 0.06 1.67 7.53 -52.49 -0.40 1.27 16
9 C 0.24 5.91 0.86 -89.95 -0.08 5.83 16
10 O -0.59 -15.56 13.09 -35.23 -0.46 -16.02 16
11 C -0.13 -3.18 5.66 -24.59 -0.14 -3.31 16
12 C 0.06 1.12 5.06 -2.30 -0.01 1.11 16
13 N -0.52 -10.10 5.16 -231.25 -1.19 -11.30 16
14 C 0.02 0.37 4.39 -3.82 -0.02 0.35 16
15 C 0.12 1.52 3.25 -26.73 -0.09 1.43 16
16 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16
17 O -0.55 -7.26 7.08 -35.23 -0.25 -7.51 16
18 C 0.02 0.18 4.88 -3.83 -0.02 0.16 16
19 N -0.51 -5.78 5.40 -230.45 -1.24 -7.03 16
20 C 0.05 0.52 4.65 -1.90 -0.01 0.51 16
21 C -0.13 -1.20 7.06 -24.87 -0.18 -1.37 16
22 C -0.13 -1.09 6.93 -25.37 -0.18 -1.27 16
23 C 0.03 0.32 6.70 -2.75 -0.02 0.30 16
24 C 0.06 1.25 6.21 -2.84 -0.02 1.23 16
25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16
26 H 0.38 10.28 6.99 45.56 0.32 10.60 16
27 H 0.06 1.51 8.04 -51.93 -0.42 1.09 16
28 H 0.07 1.75 7.76 -51.93 -0.40 1.35 16
29 H 0.03 0.61 6.97 -51.93 -0.36 0.25 16
30 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16
31 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16
32 H 0.03 0.55 7.85 -51.93 -0.41 0.15 16
33 H 0.36 4.15 7.99 45.56 0.36 4.51 16
34 H 0.03 0.38 7.81 -51.93 -0.41 -0.02 16
35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16
36 H 0.10 1.25 6.83 -51.93 -0.35 0.89 16
37 H 0.04 0.44 6.81 -51.93 -0.35 0.09 16
38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.04 0.38 7.57 -51.93 -0.39 -0.01 16
43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
44 H 0.08 1.73 7.63 -51.93 -0.40 1.34 16
45 H 0.04 0.95 7.48 -51.93 -0.39 0.56 16
LS Contribution 339.61 15.07 5.12 5.12
Total: -1.00 -27.82 339.61 -10.08 -37.90
By element:
Atomic # 1 Polarization: 21.10 SS G_CDS: -6.50 Total: 14.60 kcal
Atomic # 6 Polarization: -6.82 SS G_CDS: -1.12 Total: -7.94 kcal
Atomic # 7 Polarization: -40.10 SS G_CDS: -1.84 Total: -41.94 kcal
Atomic # 8 Polarization: -22.83 SS G_CDS: -0.71 Total: -23.54 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -27.82 -10.08 -37.90 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829974928.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.956 kcal
(2) G-P(sol) polarization free energy of solvation -27.816 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds