Wall clock time and date at job start Tue Mar 31 2020 03:11:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86799 * 119.99728 * 2 1
4 4 H 1.48505 * 109.47378 * 270.00138 * 3 2 1
5 5 H 1.48499 * 109.47251 * 30.00333 * 3 2 1
6 6 H 1.48504 * 109.46941 * 150.00027 * 3 2 1
7 7 C 1.37878 * 119.99930 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99672 * 179.97438 * 7 2 1
9 9 C 1.50696 * 120.00435 * 359.97438 * 7 2 1
10 10 O 1.42904 * 110.76379 * 56.79588 * 9 7 2
11 11 C 1.55143 * 110.70257 * 293.60129 * 9 7 2
12 12 C 1.54911 * 101.64927 * 205.96029 * 11 9 7
13 13 N 1.47846 * 104.79662 * 37.07088 * 12 11 9
14 14 C 1.46901 * 110.99716 * 213.63670 * 13 12 11
15 15 C 1.53000 * 109.46818 * 290.83849 * 14 13 12
16 16 H 1.09002 * 109.47398 * 305.00447 * 15 14 13
17 17 O 1.42896 * 109.47231 * 65.00513 * 15 14 13
18 18 C 1.52997 * 109.47060 * 185.00277 * 15 14 13
19 19 N 1.46894 * 109.47515 * 180.02562 * 18 15 14
20 20 C 1.48542 * 110.99968 * 52.60297 * 19 18 15
21 21 C 1.54931 * 103.22694 * 159.72119 * 20 19 18
22 22 C 1.54599 * 102.92476 * 322.58603 * 21 20 19
23 23 C 1.47903 * 111.00089 * 169.99840 * 19 18 15
24 24 C 1.47440 * 108.56542 * 335.90275 * 13 12 11
25 25 H 0.97001 * 120.00500 * 359.97438 * 1 2 3
26 26 H 0.96698 * 114.00588 * 303.20552 * 10 9 7
27 27 H 1.08995 * 110.99023 * 324.05426 * 11 9 7
28 28 H 1.09005 * 110.99007 * 87.83520 * 11 9 7
29 29 H 1.09000 * 110.37092 * 278.24011 * 12 11 9
30 30 H 1.09003 * 110.37166 * 155.90208 * 12 11 9
31 31 H 1.09002 * 109.46747 * 170.84330 * 14 13 12
32 32 H 1.08991 * 109.47315 * 50.84397 * 14 13 12
33 33 H 0.96708 * 114.00101 * 59.99127 * 17 15 14
34 34 H 1.09002 * 109.47153 * 300.00319 * 18 15 14
35 35 H 1.08998 * 109.47533 * 59.99948 * 18 15 14
36 36 H 1.08999 * 110.66829 * 278.16218 * 20 19 18
37 37 H 1.09005 * 110.66356 * 41.28669 * 20 19 18
38 38 H 1.08997 * 110.72506 * 204.22832 * 21 20 19
39 39 H 1.09001 * 110.87920 * 81.01712 * 21 20 19
40 40 H 1.08997 * 110.30774 * 263.03983 * 22 21 20
41 41 H 1.09001 * 110.38904 * 140.91687 * 22 21 20
42 42 H 1.08994 * 109.91868 * 333.51091 * 23 19 18
43 43 H 1.09000 * 109.91476 * 94.61275 * 23 19 18
44 44 H 1.09002 * 109.89272 * 120.39582 * 24 13 12
45 45 H 1.09001 * 109.89023 * 241.42554 * 24 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4965 2.0466 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5466 1.4402 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 8 0.3636 -2.5719 -1.1183
11 6 0.4742 -2.6840 1.3296
12 6 0.3738 -4.2271 1.4214
13 7 1.6624 -4.7215 0.8914
14 6 1.4857 -5.9955 0.1816
15 6 1.1371 -7.0951 1.1867
16 1 1.9008 -7.1327 1.9636
17 8 -0.1321 -6.8136 1.7797
18 6 1.0756 -8.4435 0.4664
19 7 0.7404 -9.4993 1.4312
20 6 -0.4849 -9.1522 2.1958
21 6 -0.9682 -10.5229 2.7322
22 6 -0.6541 -11.4826 1.5616
23 6 0.4379 -10.7717 0.7407
24 6 2.2283 -3.6934 -0.0012
25 1 -0.4851 0.8400 0.0004
26 1 -0.2714 -1.8440 -1.1644
27 1 1.0372 -2.2786 2.1702
28 1 -0.5153 -2.2306 1.2701
29 1 -0.4524 -4.5906 0.8104
30 1 0.2456 -4.5380 2.4583
31 1 2.4099 -6.2549 -0.3348
32 1 0.6788 -5.8979 -0.5446
33 1 -0.8606 -6.7652 1.1455
34 1 0.3120 -8.4060 -0.3105
35 1 2.0437 -8.6584 0.0140
36 1 -0.2468 -8.4790 3.0193
37 1 -1.2349 -8.7094 1.5402
38 1 -2.0386 -10.5015 2.9366
39 1 -0.4122 -10.8087 3.6251
40 1 -1.5438 -11.6396 0.9519
41 1 -0.2829 -12.4350 1.9404
42 1 0.0732 -10.5701 -0.2664
43 1 1.3337 -11.3910 0.6941
44 1 3.2026 -3.3754 0.3702
45 1 2.3287 -4.0930 -1.0103
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000829974928.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:11:41
Heat of formation + Delta-G solvation = -110.506421 kcal
Electronic energy + Delta-G solvation = -23730.458439 eV
Core-core repulsion = 20360.687833 eV
Total energy + Delta-G solvation = -3369.770606 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.72917 -39.79902 -37.87266 -36.06754 -34.13229 -33.45356 -32.00591 -29.87180
-29.64160 -29.33217 -26.72301 -25.06672 -22.84656 -21.92385 -21.87193 -21.50083
-21.22018 -19.14741 -17.71947 -17.38933 -16.92821 -16.75398 -16.42516 -16.18727
-15.84794 -15.77237 -15.17574 -14.72920 -14.54264 -14.26909 -13.79506 -13.67617
-13.39280 -13.36703 -13.18533 -13.08450 -12.97086 -12.68173 -12.35956 -12.33032
-12.30350 -12.15663 -12.08490 -11.99283 -11.72839 -11.64227 -11.37816 -11.17174
-10.66315 -10.45144 -10.06992 -9.33560 -9.20013 -8.23004 -6.37658 1.39874
1.41703 1.51566 2.37853 2.85590 3.01511 3.25902 3.49742 3.77005
3.84300 3.90386 4.02936 4.10334 4.18843 4.22008 4.33381 4.43373
4.43916 4.48656 4.57276 4.63099 4.69526 4.73434 4.75643 4.84880
4.96438 4.97724 5.03272 5.12235 5.16491 5.20757 5.33926 5.35639
5.39258 5.48992 5.55369 5.80473 5.97346 6.01534 6.09494 6.19884
6.29240 6.66693 6.77487 7.32984 7.42474 8.82393
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.049546 B = 0.003241 C = 0.003175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 564.997206 B = 8637.628036 C = 8818.146353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.027 3.973
3 Si 0.961 3.039
4 H -0.276 1.276
5 H -0.280 1.280
6 H -0.271 1.271
7 C -0.559 4.559
8 H 0.055 0.945
9 C 0.221 3.779
10 O -0.599 6.599
11 C -0.130 4.130
12 C 0.074 3.926
13 N -0.526 5.526
14 C 0.025 3.975
15 C 0.129 3.871
16 H 0.098 0.902
17 O -0.558 6.558
18 C 0.025 3.975
19 N -0.529 5.529
20 C 0.049 3.951
21 C -0.131 4.131
22 C -0.128 4.128
23 C 0.031 3.969
24 C 0.064 3.936
25 H 0.269 0.731
26 H 0.377 0.623
27 H 0.045 0.955
28 H 0.051 0.949
29 H 0.036 0.964
30 H 0.078 0.922
31 H 0.086 0.914
32 H 0.030 0.970
33 H 0.373 0.627
34 H 0.041 0.959
35 H 0.090 0.910
36 H 0.081 0.919
37 H 0.043 0.957
38 H 0.078 0.922
39 H 0.067 0.933
40 H 0.072 0.928
41 H 0.078 0.922
42 H 0.044 0.956
43 H 0.079 0.921
44 H 0.074 0.926
45 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.215 -19.422 1.918 19.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.173 4.173
3 Si 0.787 3.213
4 H -0.202 1.202
5 H -0.206 1.206
6 H -0.195 1.195
7 C -0.597 4.597
8 H 0.074 0.926
9 C 0.181 3.819
10 O -0.408 6.408
11 C -0.169 4.169
12 C -0.053 4.053
13 N -0.250 5.250
14 C -0.104 4.104
15 C 0.070 3.930
16 H 0.116 0.884
17 O -0.364 6.364
18 C -0.104 4.104
19 N -0.253 5.253
20 C -0.078 4.078
21 C -0.169 4.169
22 C -0.166 4.166
23 C -0.097 4.097
24 C -0.064 4.064
25 H 0.079 0.921
26 H 0.228 0.772
27 H 0.064 0.936
28 H 0.070 0.930
29 H 0.055 0.945
30 H 0.097 0.903
31 H 0.104 0.896
32 H 0.048 0.952
33 H 0.222 0.778
34 H 0.059 0.941
35 H 0.108 0.892
36 H 0.100 0.900
37 H 0.061 0.939
38 H 0.097 0.903
39 H 0.086 0.914
40 H 0.091 0.909
41 H 0.097 0.903
42 H 0.062 0.938
43 H 0.098 0.902
44 H 0.092 0.908
45 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -0.858 -20.011 3.083 20.265
hybrid contribution -1.402 2.035 -1.810 3.063
sum -2.260 -17.976 1.273 18.162
Atomic orbital electron populations
1.69670 1.06868 1.28182 1.50835 1.25717 0.95864 1.02380 0.93325
0.85508 0.78701 0.78919 0.78184 1.20183 1.20558 1.19535 1.21908
0.93588 0.92225 1.51966 0.92632 1.19945 0.86649 0.92403 0.82932
1.86047 1.51465 1.52890 1.50439 1.23040 0.99937 0.94732 0.99174
1.22843 0.89446 0.93467 0.99593 1.63630 1.24647 1.02851 1.33832
1.22958 1.01275 0.90741 0.95460 1.21715 0.86212 0.90107 0.94983
0.88418 1.86730 1.17406 1.93812 1.38455 1.22844 1.02189 0.91641
0.93724 1.64773 1.34607 1.02709 1.23231 1.23295 0.90090 0.96487
0.97951 1.22603 1.01321 0.94665 0.98286 1.22389 0.98199 0.99115
0.96863 1.22955 0.99102 0.91347 0.96251 1.22703 0.97933 0.91307
0.94446 0.92118 0.77244 0.93577 0.93044 0.94534 0.90338 0.89599
0.95212 0.77800 0.94097 0.89155 0.90030 0.93852 0.90340 0.91376
0.90882 0.90290 0.93764 0.90217 0.90791 0.93732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.59 10.69 21.45 0.23 -49.36 16
2 C 0.03 1.45 5.28 84.66 0.45 1.89 16
3 Si 0.96 42.69 29.54 68.60 2.03 44.72 16
4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16
5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
7 C -0.56 -30.56 8.21 25.60 0.21 -30.35 16
8 H 0.06 3.02 7.53 -2.91 -0.02 3.00 16
9 C 0.22 11.15 0.86 -10.36 -0.01 11.14 16
10 O -0.60 -31.65 13.09 -148.98 -1.95 -33.60 16
11 C -0.13 -6.18 5.66 31.98 0.18 -6.00 16
12 C 0.07 2.89 5.06 86.77 0.44 3.33 16
13 N -0.53 -19.78 5.16 -885.54 -4.57 -24.35 16
14 C 0.02 0.74 4.39 86.30 0.38 1.12 16
15 C 0.13 3.22 3.25 30.59 0.10 3.31 16
16 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16
17 O -0.56 -13.98 7.08 -148.98 -1.05 -15.03 16
18 C 0.03 0.52 4.88 86.30 0.42 0.94 16
19 N -0.53 -10.94 5.40 -883.02 -4.76 -15.70 16
20 C 0.05 0.98 4.65 86.65 0.40 1.38 16
21 C -0.13 -2.12 7.06 31.80 0.22 -1.89 16
22 C -0.13 -1.81 6.93 31.48 0.22 -1.59 16
23 C 0.03 0.52 6.70 86.45 0.58 1.10 16
24 C 0.06 2.80 6.21 86.65 0.54 3.34 16
25 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16
26 H 0.38 20.59 6.99 -74.06 -0.52 20.07 16
27 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16
28 H 0.05 2.60 7.76 -2.38 -0.02 2.58 16
29 H 0.04 1.39 6.97 -2.39 -0.02 1.37 16
30 H 0.08 2.95 7.60 -2.39 -0.02 2.93 16
31 H 0.09 2.36 8.03 -2.39 -0.02 2.34 16
32 H 0.03 0.93 7.85 -2.39 -0.02 0.91 16
33 H 0.37 7.90 7.99 -74.05 -0.59 7.30 16
34 H 0.04 0.80 7.81 -2.39 -0.02 0.78 16
35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
36 H 0.08 1.95 6.83 -2.39 -0.02 1.94 16
37 H 0.04 0.84 6.81 -2.38 -0.02 0.83 16
38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
42 H 0.04 0.71 7.57 -2.39 -0.02 0.69 16
43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
44 H 0.07 3.27 7.63 -2.39 -0.02 3.25 16
45 H 0.04 1.91 7.48 -2.39 -0.02 1.89 16
Total: -1.00 -58.42 339.61 -6.09 -64.50
By element:
Atomic # 1 Polarization: 41.24 SS G_CDS: -0.13 Total: 41.11 kcal
Atomic # 6 Polarization: -16.41 SS G_CDS: 4.13 Total: -12.28 kcal
Atomic # 7 Polarization: -80.31 SS G_CDS: -9.11 Total: -89.41 kcal
Atomic # 8 Polarization: -45.63 SS G_CDS: -3.00 Total: -48.63 kcal
Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal
Total: -58.42 -6.09 -64.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829974928.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.002 kcal
(2) G-P(sol) polarization free energy of solvation -58.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.418 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds