Wall clock time and date at job start Tue Mar 31 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00356 * 2 1 4 4 O 1.20826 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00283 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.04760 * 332.33445 * 5 3 2 7 7 C 1.54262 * 110.03305 * 210.91745 * 5 3 2 8 8 C 1.54886 * 104.19465 * 217.10384 * 7 5 3 9 9 C 1.54891 * 102.74841 * 37.94432 * 8 7 5 10 10 C 1.53874 * 110.03226 * 93.74827 * 5 3 2 11 11 H 1.08997 * 110.07607 * 238.59351 * 10 5 3 12 12 N 1.46897 * 110.03450 * 0.02562 * 10 5 3 13 13 C 1.46901 * 111.00098 * 203.62285 * 12 10 5 14 14 C 1.50706 * 109.47118 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99809 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99667 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99803 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47351 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99957 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00534 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99601 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00508 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47318 * 270.00298 * 22 20 18 24 24 H 1.48500 * 109.46796 * 30.00335 * 22 20 18 25 25 H 1.48495 * 109.47098 * 149.99749 * 22 20 18 26 26 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46872 * 300.00355 * 1 2 3 28 28 H 1.09001 * 109.46836 * 60.00322 * 1 2 3 29 29 H 1.08997 * 110.48289 * 98.42332 * 7 5 3 30 30 H 1.09003 * 110.59817 * 335.83512 * 7 5 3 31 31 H 1.08994 * 110.75715 * 279.62472 * 8 7 5 32 32 H 1.09004 * 110.91400 * 156.32981 * 8 7 5 33 33 H 1.09001 * 110.48055 * 203.37623 * 9 8 7 34 34 H 1.08997 * 110.48825 * 80.73835 * 9 8 7 35 35 H 1.00898 * 111.00666 * 79.65870 * 12 10 5 36 36 H 1.08999 * 109.47481 * 59.99643 * 13 12 10 37 37 H 1.08999 * 109.46426 * 299.99216 * 13 12 10 38 38 H 0.96995 * 120.00532 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.46910 * 60.00063 * 17 16 14 40 40 H 1.08995 * 109.47263 * 300.00333 * 17 16 14 41 41 H 0.96998 * 119.99791 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2748 -0.0006 6 1 3.9872 0.3886 0.4745 7 6 4.0294 2.5439 0.7441 8 6 5.2607 3.0288 -0.0608 9 6 4.8486 2.7363 -1.5250 10 6 4.0873 1.3970 -1.4433 11 1 4.7608 0.5703 -1.6693 12 7 2.9610 1.4007 -2.3864 13 6 3.3898 0.9595 -3.7203 14 6 2.2102 0.9757 -4.6581 15 8 1.1196 1.3204 -4.2547 16 7 2.3673 0.6072 -5.9449 17 6 1.2205 0.6224 -6.8564 18 6 1.6606 0.1711 -8.2252 19 1 2.6916 -0.0995 -8.3989 20 6 0.7472 0.1037 -9.2558 21 7 -0.5083 0.4338 -9.0443 22 14 1.2929 -0.4550 -10.9526 23 1 1.7273 0.7229 -11.7457 24 1 2.4248 -1.4070 -10.8199 25 1 0.1607 -1.1251 -11.6410 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.3140 2.3028 1.7683 30 1 3.2455 3.3012 0.7352 31 1 6.1491 2.4592 0.2116 32 1 5.4271 4.0957 0.0878 33 1 5.7311 2.6355 -2.1567 34 1 4.1961 3.5236 -1.9023 35 1 2.5275 2.3109 -2.4285 36 1 3.7895 -0.0525 -3.6573 37 1 4.1614 1.6323 -4.0948 38 1 3.2394 0.3312 -6.2674 39 1 0.8197 1.6341 -6.9192 40 1 0.4497 -0.0511 -6.4818 41 1 -1.1508 0.3867 -9.7694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852756157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:50 Heat of formation + Delta-G solvation = -133.740702 kcal Electronic energy + Delta-G solvation = -22742.501675 eV Core-core repulsion = 19235.890461 eV Total energy + Delta-G solvation = -3506.611215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67245 -38.97461 -38.13472 -36.07792 -34.40503 -33.91081 -32.30815 -30.08208 -28.79310 -27.39805 -27.01391 -24.89735 -22.43271 -22.27244 -21.12867 -19.81654 -19.49027 -17.59194 -17.42966 -16.58940 -16.37624 -15.71739 -15.53735 -15.29642 -15.09138 -14.68295 -14.39609 -13.86163 -13.55350 -13.45798 -13.21600 -12.74986 -12.52365 -12.23040 -11.93563 -11.92166 -11.79647 -11.53775 -11.45307 -11.35949 -11.07163 -10.97743 -10.94276 -10.87540 -10.53075 -10.31806 -10.20181 -9.39631 -9.05106 -8.73255 -8.44164 -7.86077 -6.16439 -4.23509 2.45433 2.90631 3.23930 3.29931 3.32394 3.39525 3.73562 4.16989 4.28694 4.32987 4.51957 4.68973 5.03943 5.06605 5.11810 5.14605 5.19501 5.23259 5.28321 5.30851 5.41118 5.42944 5.49499 5.57961 5.60526 5.71417 5.73385 5.80519 5.87361 6.05624 6.64928 6.84523 7.29078 7.33823 7.45547 7.52830 7.67537 7.97561 7.99654 8.63978 8.79075 9.12689 9.43259 10.93778 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.003375 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.000004 B = 8294.909757 C = 9068.188764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.354 6.354 3 C 0.494 3.506 4 O -0.513 6.513 5 C -0.080 4.080 6 H 0.104 0.896 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.156 4.156 10 C 0.096 3.904 11 H 0.096 0.904 12 N -0.672 5.672 13 C 0.042 3.958 14 C 0.495 3.505 15 O -0.542 6.542 16 N -0.714 5.714 17 C 0.251 3.749 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.273 1.273 25 H -0.284 1.284 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.358 0.642 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.389 0.611 39 H 0.025 0.975 40 H 0.026 0.974 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.737 1.016 19.166 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.270 6.270 3 C 0.337 3.663 4 O -0.401 6.401 5 C -0.100 4.100 6 H 0.122 0.878 7 C -0.156 4.156 8 C -0.156 4.156 9 C -0.195 4.195 10 C -0.014 4.014 11 H 0.114 0.886 12 N -0.305 5.305 13 C -0.090 4.090 14 C 0.279 3.721 15 O -0.420 6.420 16 N -0.364 5.364 17 C 0.130 3.870 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.205 1.205 24 H -0.197 1.197 25 H -0.210 1.210 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.179 0.821 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.222 0.778 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.251 0.934 19.501 22.534 hybrid contribution 0.879 0.302 -1.542 1.800 sum 12.130 1.237 17.960 21.708 Atomic orbital electron populations 1.23197 0.76495 1.03275 1.02481 1.86439 1.23262 1.33458 1.83800 1.22949 0.91107 0.81357 0.70881 1.90621 1.66958 1.36489 1.46036 1.21772 0.88880 1.01334 0.98010 0.87769 1.22472 0.98722 0.96011 0.98441 1.22392 0.97376 1.01427 0.94392 1.23189 1.00870 0.97808 0.97679 1.22201 0.91317 0.97903 0.90007 0.88634 1.60221 1.27154 1.35668 1.07426 1.21855 0.96019 1.02152 0.89012 1.20347 0.89875 0.78761 0.83107 1.90679 1.26971 1.47967 1.76369 1.46434 1.14383 1.65984 1.09554 1.19080 0.83587 0.97633 0.86684 1.21226 0.95906 1.46865 0.94156 0.91921 1.24962 0.94721 0.95026 0.99354 1.69982 1.02368 1.46971 1.32946 0.86409 0.78274 0.78795 0.83395 1.20482 1.19742 1.20998 0.88634 0.92660 0.91188 0.90869 0.89436 0.91073 0.90997 0.90887 0.90854 0.82095 0.88437 0.92551 0.77820 0.95656 0.95561 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.35 -5.03 10.57 -39.25 -0.41 -5.44 16 3 C 0.49 6.92 5.55 36.01 0.20 7.12 16 4 O -0.51 -8.55 15.36 -18.75 -0.29 -8.84 16 5 C -0.08 -0.81 3.40 -90.65 -0.31 -1.11 16 6 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.12 -1.02 6.31 -25.08 -0.16 -1.17 16 8 C -0.12 -0.84 6.91 -24.74 -0.17 -1.01 16 9 C -0.16 -1.34 6.39 -25.07 -0.16 -1.50 16 10 C 0.10 0.98 3.20 -66.60 -0.21 0.76 16 11 H 0.10 0.81 7.83 -51.93 -0.41 0.41 16 12 N -0.67 -9.45 4.32 -106.81 -0.46 -9.91 16 13 C 0.04 0.59 5.99 -4.97 -0.03 0.56 16 14 C 0.50 9.92 7.87 -10.98 -0.09 9.83 16 15 O -0.54 -13.36 16.20 5.55 0.09 -13.27 16 16 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 17 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 18 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 19 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 22 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.93 6.90 -51.93 -0.36 0.57 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.74 7.58 -51.93 -0.39 0.34 16 35 H 0.36 5.73 7.66 -39.29 -0.30 5.43 16 36 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 344.25 15.07 5.19 5.19 Total: -1.00 -34.35 344.25 -7.22 -41.56 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.40 Total: 7.46 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.31 Total: 8.28 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.07 Total: -50.80 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.61 Total: -27.55 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.35 -7.22 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852756157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.177 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds