Wall clock time and date at job start Tue Mar 31 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00356 * 2 1 4 4 O 1.20826 * 119.99818 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00283 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.04760 * 332.33445 * 5 3 2 7 7 C 1.54262 * 110.03305 * 210.91745 * 5 3 2 8 8 C 1.54886 * 104.19465 * 217.10384 * 7 5 3 9 9 C 1.54891 * 102.74841 * 37.94432 * 8 7 5 10 10 C 1.53874 * 110.03226 * 93.74827 * 5 3 2 11 11 H 1.08997 * 110.07607 * 238.59351 * 10 5 3 12 12 N 1.46897 * 110.03450 * 0.02562 * 10 5 3 13 13 C 1.46901 * 111.00098 * 203.62285 * 12 10 5 14 14 C 1.50706 * 109.47118 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99809 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99667 * 179.97438 * 14 13 12 17 17 C 1.46502 * 119.99803 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47351 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99957 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00534 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99601 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00508 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47318 * 270.00298 * 22 20 18 24 24 H 1.48500 * 109.46796 * 30.00335 * 22 20 18 25 25 H 1.48495 * 109.47098 * 149.99749 * 22 20 18 26 26 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46872 * 300.00355 * 1 2 3 28 28 H 1.09001 * 109.46836 * 60.00322 * 1 2 3 29 29 H 1.08997 * 110.48289 * 98.42332 * 7 5 3 30 30 H 1.09003 * 110.59817 * 335.83512 * 7 5 3 31 31 H 1.08994 * 110.75715 * 279.62472 * 8 7 5 32 32 H 1.09004 * 110.91400 * 156.32981 * 8 7 5 33 33 H 1.09001 * 110.48055 * 203.37623 * 9 8 7 34 34 H 1.08997 * 110.48825 * 80.73835 * 9 8 7 35 35 H 1.00898 * 111.00666 * 79.65870 * 12 10 5 36 36 H 1.08999 * 109.47481 * 59.99643 * 13 12 10 37 37 H 1.08999 * 109.46426 * 299.99216 * 13 12 10 38 38 H 0.96995 * 120.00532 * 0.02562 * 16 14 13 39 39 H 1.08999 * 109.46910 * 60.00063 * 17 16 14 40 40 H 1.08995 * 109.47263 * 300.00333 * 17 16 14 41 41 H 0.96998 * 119.99791 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2748 -0.0006 6 1 3.9872 0.3886 0.4745 7 6 4.0294 2.5439 0.7441 8 6 5.2607 3.0288 -0.0608 9 6 4.8486 2.7363 -1.5250 10 6 4.0873 1.3970 -1.4433 11 1 4.7608 0.5703 -1.6693 12 7 2.9610 1.4007 -2.3864 13 6 3.3898 0.9595 -3.7203 14 6 2.2102 0.9757 -4.6581 15 8 1.1196 1.3204 -4.2547 16 7 2.3673 0.6072 -5.9449 17 6 1.2205 0.6224 -6.8564 18 6 1.6606 0.1711 -8.2252 19 1 2.6916 -0.0995 -8.3989 20 6 0.7472 0.1037 -9.2558 21 7 -0.5083 0.4338 -9.0443 22 14 1.2929 -0.4550 -10.9526 23 1 1.7273 0.7229 -11.7457 24 1 2.4248 -1.4070 -10.8199 25 1 0.1607 -1.1251 -11.6410 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.3140 2.3028 1.7683 30 1 3.2455 3.3012 0.7352 31 1 6.1491 2.4592 0.2116 32 1 5.4271 4.0957 0.0878 33 1 5.7311 2.6355 -2.1567 34 1 4.1961 3.5236 -1.9023 35 1 2.5275 2.3109 -2.4285 36 1 3.7895 -0.0525 -3.6573 37 1 4.1614 1.6323 -4.0948 38 1 3.2394 0.3312 -6.2674 39 1 0.8197 1.6341 -6.9192 40 1 0.4497 -0.0511 -6.4818 41 1 -1.1508 0.3867 -9.7694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852756157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:49 Heat of formation + Delta-G solvation = -159.489123 kcal Electronic energy + Delta-G solvation = -22743.618211 eV Core-core repulsion = 19235.890461 eV Total energy + Delta-G solvation = -3507.727750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68667 -40.52132 -39.16454 -37.21949 -36.18206 -35.12674 -34.33822 -30.89267 -30.19359 -28.69018 -28.24065 -26.19162 -24.24870 -23.32545 -21.77868 -21.44319 -20.51746 -19.05691 -18.59833 -17.89963 -17.61437 -17.10921 -17.03635 -16.70863 -16.40640 -15.92441 -15.65637 -15.16579 -14.72394 -14.52544 -14.40412 -14.17938 -14.03639 -13.80822 -13.46684 -13.01724 -12.94256 -12.91742 -12.71091 -12.42446 -12.31710 -12.22991 -11.97609 -11.82331 -11.67841 -11.53745 -11.49667 -11.26407 -10.81153 -10.74773 -9.84282 -9.43532 -8.29870 -6.46991 1.39453 1.42746 1.45489 1.56796 1.78485 1.94518 2.28501 2.48841 3.05002 3.16400 3.56470 3.62472 3.85460 4.00167 4.22048 4.30393 4.33738 4.35316 4.36310 4.41573 4.48802 4.52551 4.59098 4.71487 4.74671 4.99100 5.04035 5.11333 5.19552 5.19964 5.22334 5.44693 5.48073 5.60269 5.68258 5.83787 5.95186 6.15213 6.64602 6.92223 6.93678 7.22923 7.52343 8.82501 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.003375 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.000004 B = 8294.909757 C = 9068.188764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.486 3.514 4 O -0.550 6.550 5 C -0.079 4.079 6 H 0.133 0.867 7 C -0.117 4.117 8 C -0.109 4.109 9 C -0.154 4.154 10 C 0.095 3.905 11 H 0.125 0.875 12 N -0.694 5.694 13 C 0.060 3.940 14 C 0.489 3.511 15 O -0.596 6.596 16 N -0.707 5.707 17 C 0.267 3.733 18 C -0.555 4.555 19 H 0.086 0.914 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.987 3.013 23 H -0.271 1.271 24 H -0.253 1.253 25 H -0.285 1.285 26 H 0.123 0.877 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.341 0.659 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.410 0.590 39 H -0.017 1.017 40 H -0.016 1.016 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.675 -0.277 19.212 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.277 6.277 3 C 0.331 3.669 4 O -0.441 6.441 5 C -0.099 4.099 6 H 0.151 0.849 7 C -0.155 4.155 8 C -0.146 4.146 9 C -0.193 4.193 10 C -0.014 4.014 11 H 0.143 0.857 12 N -0.326 5.326 13 C -0.071 4.071 14 C 0.276 3.724 15 O -0.477 6.477 16 N -0.358 5.358 17 C 0.144 3.856 18 C -0.593 4.593 19 H 0.104 0.896 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.810 3.190 23 H -0.196 1.196 24 H -0.177 1.177 25 H -0.211 1.211 26 H 0.141 0.859 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.245 0.755 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.267 -0.381 19.575 24.828 hybrid contribution -0.418 0.730 -1.466 1.690 sum 14.849 0.349 18.110 23.422 Atomic orbital electron populations 1.23281 0.76265 1.04744 1.01351 1.86445 1.23716 1.33857 1.83673 1.23885 0.92782 0.80655 0.69556 1.90604 1.68159 1.37585 1.47713 1.22027 0.85761 1.03304 0.98760 0.84885 1.22477 0.98578 0.94576 0.99880 1.22393 0.97350 1.02124 0.92773 1.23155 1.00883 0.96138 0.99120 1.22430 0.90448 0.99851 0.88677 0.85740 1.60224 1.29436 1.34862 1.08046 1.21801 0.93058 1.04760 0.87523 1.21559 0.91132 0.76597 0.83115 1.90660 1.29885 1.49939 1.77229 1.46151 1.13674 1.66414 1.09567 1.18495 0.84703 0.94073 0.88294 1.21629 0.97058 1.46540 0.94049 0.89572 1.26118 0.94541 0.94762 1.04392 1.70155 1.04058 1.48320 1.34620 0.85123 0.78154 0.78679 0.77056 1.19601 1.17666 1.21068 0.85905 0.91610 0.94490 0.88733 0.92380 0.88433 0.90627 0.88815 0.93133 0.83979 0.85326 0.89142 0.75458 0.99883 0.99839 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.56 113.37 1.20 2.17 16 2 O -0.36 -10.24 10.57 -51.38 -0.54 -10.78 16 3 C 0.49 13.65 5.55 71.24 0.40 14.05 16 4 O -0.55 -19.27 15.36 21.97 0.34 -18.93 16 5 C -0.08 -1.42 3.40 -10.82 -0.04 -1.46 16 6 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 7 C -0.12 -1.78 6.31 31.67 0.20 -1.58 16 8 C -0.11 -1.19 6.91 31.88 0.22 -0.97 16 9 C -0.15 -2.20 6.39 31.67 0.20 -2.00 16 10 C 0.10 1.65 3.20 45.64 0.15 1.80 16 11 H 0.12 1.48 7.83 -2.39 -0.02 1.46 16 12 N -0.69 -18.84 4.32 -491.84 -2.12 -20.97 16 13 C 0.06 1.54 5.99 85.56 0.51 2.05 16 14 C 0.49 19.78 7.87 87.66 0.69 20.47 16 15 O -0.60 -30.98 16.20 -3.04 -0.05 -31.03 16 16 N -0.71 -29.86 5.55 -466.79 -2.59 -32.45 16 17 C 0.27 14.96 5.43 85.63 0.46 15.42 16 18 C -0.56 -30.35 9.28 25.60 0.24 -30.11 16 19 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 20 C 0.00 0.07 5.46 84.65 0.46 0.53 16 21 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 22 Si 0.99 42.38 29.54 68.60 2.03 44.41 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 25 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 26 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.24 6.90 -2.39 -0.02 1.23 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.97 7.58 -2.39 -0.02 0.95 16 35 H 0.34 11.22 7.66 -89.70 -0.69 10.53 16 36 H 0.13 2.57 8.07 -2.39 -0.02 2.55 16 37 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.41 13.84 8.32 -92.71 -0.77 13.06 16 39 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.89 344.25 1.62 -79.27 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.42 Total: 26.92 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 4.69 Total: 20.39 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -4.43 Total: -110.25 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -0.25 Total: -60.74 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -80.89 1.62 -79.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852756157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.215 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds