Wall clock time and date at job start Tue Mar 31 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 125.29873 * 2 1 4 4 O 1.41879 * 107.41254 * 179.97438 * 3 2 1 5 5 N 1.41880 * 106.38888 * 359.78161 * 4 3 2 6 6 C 1.29957 * 107.40837 * 0.36723 * 5 4 3 7 7 C 1.50705 * 125.29967 * 179.89511 * 6 5 4 8 8 N 1.46904 * 109.47092 * 269.69064 * 7 6 5 9 9 C 1.46892 * 111.00150 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47400 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47176 * 60.00212 * 10 9 8 12 12 O 1.42906 * 109.46979 * 300.00140 * 10 9 8 13 13 C 1.53003 * 109.47379 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47243 * 180.46485 * 13 10 9 15 15 C 1.46900 * 111.00175 * 199.84915 * 14 13 10 16 16 C 1.46900 * 111.00200 * 75.89192 * 14 13 10 17 17 C 1.50698 * 109.47204 * 189.99952 * 16 14 13 18 18 H 1.08003 * 120.00315 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00178 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00120 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47037 * 60.00689 * 21 19 17 23 23 H 1.48496 * 109.47096 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47362 * 300.00715 * 21 19 17 25 25 H 1.08999 * 109.47475 * 270.00302 * 1 2 3 26 26 H 1.09001 * 109.47437 * 30.00649 * 1 2 3 27 27 H 1.09002 * 109.46939 * 150.00256 * 1 2 3 28 28 H 1.09001 * 109.47207 * 149.69175 * 7 6 5 29 29 H 1.09001 * 109.47408 * 29.69018 * 7 6 5 30 30 H 1.00902 * 110.99507 * 56.04616 * 8 7 6 31 31 H 1.09006 * 109.47311 * 300.00534 * 9 8 7 32 32 H 1.09003 * 109.47279 * 60.00029 * 9 8 7 33 33 H 0.96695 * 113.99519 * 299.99498 * 12 10 9 34 34 H 1.09007 * 109.46925 * 300.46076 * 13 10 9 35 35 H 1.09000 * 109.47305 * 60.46070 * 13 10 9 36 36 H 1.09003 * 109.47048 * 64.81726 * 15 14 13 37 37 H 1.08999 * 109.47144 * 184.82024 * 15 14 13 38 38 H 1.08996 * 109.46971 * 304.82221 * 15 14 13 39 39 H 1.08995 * 109.47113 * 310.00213 * 16 14 13 40 40 H 1.08995 * 109.46845 * 70.00278 * 16 14 13 41 41 H 0.97002 * 120.00005 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2579 1.0606 0.0000 4 8 3.6081 0.6249 0.0006 5 7 3.5711 -0.7934 0.0061 6 6 2.3213 -1.1497 0.0006 7 6 1.8210 -2.5713 0.0013 8 7 1.6585 -3.0339 -1.3835 9 6 1.1705 -4.4189 -1.4220 10 6 1.0146 -4.8644 -2.8774 11 1 1.9796 -4.8051 -3.3808 12 8 0.0788 -4.0110 -3.5392 13 6 0.5057 -6.3068 -2.9175 14 7 0.3667 -6.7383 -4.3148 15 6 -0.5342 -7.8937 -4.4218 16 6 1.6777 -7.0363 -4.9067 17 6 1.5245 -7.2351 -6.3926 18 1 0.5507 -7.1483 -6.8516 19 6 2.6277 -7.5267 -7.1665 20 7 3.8136 -7.6319 -6.6078 21 14 2.4377 -7.7738 -9.0083 22 1 1.8876 -6.5373 -9.6195 23 1 3.7630 -8.0749 -9.6067 24 1 1.5113 -8.9062 -9.2629 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.8609 -2.6184 0.5151 29 1 2.5399 -3.2093 0.5154 30 1 2.5202 -2.9393 -1.8998 31 1 1.8845 -5.0699 -0.9175 32 1 0.2057 -4.4783 -0.9182 33 1 -0.8037 -4.0137 -3.1439 34 1 1.2152 -6.9568 -2.4054 35 1 -0.4632 -6.3642 -2.4214 36 1 -1.5396 -7.5997 -4.1203 37 1 -0.5525 -8.2458 -5.4532 38 1 -0.1789 -8.6929 -3.7713 39 1 2.3581 -6.2056 -4.7195 40 1 2.0808 -7.9443 -4.4583 41 1 4.5899 -7.8367 -7.1523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872250328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:30 Heat of formation + Delta-G solvation = 47.755051 kcal Electronic energy + Delta-G solvation = -22111.079678 eV Core-core repulsion = 18644.631461 eV Total energy + Delta-G solvation = -3466.448217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72222 -38.31753 -36.45664 -35.27451 -34.28132 -32.99205 -32.48767 -30.02482 -29.03910 -27.52621 -27.07157 -24.89144 -23.30684 -22.38657 -21.69480 -20.89380 -20.06721 -17.44468 -16.60672 -16.39546 -16.30940 -15.71693 -15.28249 -14.96234 -14.78357 -14.62915 -14.40238 -14.20836 -13.71928 -13.47414 -13.38630 -13.06720 -12.70811 -12.57380 -12.10202 -12.00641 -11.93827 -11.83011 -11.45898 -11.21525 -11.11460 -10.90479 -10.88401 -10.75903 -10.66033 -10.37233 -9.78780 -9.60004 -9.16295 -8.77618 -8.42517 -7.23427 -6.02432 -4.03050 0.26076 1.65083 2.38887 2.85096 3.34725 3.38749 3.42150 3.54043 3.86797 4.33968 4.43112 4.55499 4.71373 4.81356 4.86137 4.96862 5.02872 5.09048 5.19532 5.28007 5.34054 5.35708 5.51326 5.58095 5.59864 5.64694 5.97898 6.09855 6.28744 6.39351 6.53648 6.66443 6.70929 6.95753 7.24824 7.29026 7.79328 8.06758 8.13812 8.21650 8.54279 9.03891 9.60964 11.08649 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.003061 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.561609 B = 9145.152915 C = 9785.386387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.092 3.908 3 N -0.283 5.283 4 O 0.023 5.977 5 N -0.270 5.270 6 C 0.083 3.917 7 C 0.121 3.879 8 N -0.672 5.672 9 C 0.028 3.972 10 C 0.118 3.882 11 H 0.100 0.900 12 O -0.529 6.529 13 C 0.026 3.974 14 N -0.530 5.530 15 C 0.038 3.962 16 C 0.193 3.807 17 C -0.506 4.506 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.352 0.648 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.361 0.639 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.007 0.993 39 H 0.030 0.970 40 H -0.012 1.012 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 9.316 17.058 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 N -0.029 5.029 4 O -0.117 6.117 5 N -0.013 5.013 6 C -0.101 4.101 7 C -0.009 4.009 8 N -0.305 5.305 9 C -0.102 4.102 10 C 0.058 3.942 11 H 0.118 0.882 12 O -0.332 6.332 13 C -0.104 4.104 14 N -0.254 5.254 15 C -0.111 4.111 16 C 0.068 3.932 17 C -0.544 4.544 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.206 0.794 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.006 0.994 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.793 10.893 16.298 21.096 hybrid contribution 0.339 -1.896 0.149 1.932 sum -7.453 8.998 16.447 20.175 Atomic orbital electron populations 1.20610 0.84023 1.06045 1.04436 1.24574 1.00474 0.88623 0.95402 1.79942 0.89041 1.19728 1.14173 1.93400 1.20383 1.13325 1.84614 1.79947 1.17740 0.91570 1.12089 1.24509 0.89685 0.99176 0.96720 1.20580 1.01587 0.85981 0.92760 1.60395 1.37133 1.22990 1.10008 1.22785 1.00573 0.87325 0.99471 1.21856 0.94526 0.88535 0.89305 0.88186 1.86707 1.22631 1.66225 1.57591 1.22660 0.99510 0.95876 0.92318 1.62012 1.15716 1.34780 1.12936 1.22227 0.95099 0.91450 1.02314 1.19757 0.83926 0.94792 0.94729 1.21113 0.94288 1.46968 0.92041 0.91886 1.24986 0.95178 0.95601 0.98873 1.69942 0.98807 1.49400 1.35882 0.86553 0.77038 0.78692 0.85094 1.20079 1.21389 1.20326 0.88878 0.89237 0.87789 0.87544 0.92107 0.82912 0.93937 0.90308 0.79407 0.95078 0.92053 0.93702 0.90438 0.97430 0.95228 0.99437 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.05 36.01 0.36 -0.13 16 2 C 0.09 0.87 7.19 -82.38 -0.59 0.28 16 3 N -0.28 -3.47 12.98 33.74 0.44 -3.04 16 4 O 0.02 0.33 13.71 12.02 0.16 0.49 16 5 N -0.27 -3.46 12.98 33.74 0.44 -3.02 16 6 C 0.08 0.83 6.70 -82.38 -0.55 0.28 16 7 C 0.12 0.93 5.85 -4.97 -0.03 0.90 16 8 N -0.67 -6.68 6.36 -115.06 -0.73 -7.41 16 9 C 0.03 0.28 5.35 -3.83 -0.02 0.26 16 10 C 0.12 1.72 3.24 -26.73 -0.09 1.63 16 11 H 0.10 1.79 6.78 -51.93 -0.35 1.44 16 12 O -0.53 -8.22 13.08 -35.23 -0.46 -8.68 16 13 C 0.03 0.42 4.66 -3.82 -0.02 0.40 16 14 N -0.53 -11.01 4.56 -244.37 -1.11 -12.12 16 15 C 0.04 0.71 9.37 60.06 0.56 1.27 16 16 C 0.19 4.95 4.55 -4.98 -0.02 4.92 16 17 C -0.51 -14.22 8.39 -34.44 -0.29 -14.51 16 18 H 0.06 1.76 7.17 -52.48 -0.38 1.39 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.48 7.78 -51.93 -0.40 0.07 16 28 H 0.11 0.52 7.78 -51.93 -0.40 0.12 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.35 4.10 8.72 -39.29 -0.34 3.76 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.36 4.12 9.04 45.56 0.41 4.53 16 34 H 0.03 0.50 8.00 -51.92 -0.42 0.09 16 35 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.59 6.67 -51.93 -0.35 1.25 16 38 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 39 H 0.03 0.81 6.63 -51.93 -0.34 0.47 16 40 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -33.48 348.51 -6.58 -40.06 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.50 Total: 0.97 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.78 Total: -3.24 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.23 Total: -51.63 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.30 Total: -8.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.48 -6.58 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872250328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.813 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds