Wall clock time and date at job start Tue Mar 31 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 125.29873 * 2 1 4 4 O 1.41879 * 107.41254 * 179.97438 * 3 2 1 5 5 N 1.41880 * 106.38888 * 359.78161 * 4 3 2 6 6 C 1.29957 * 107.40837 * 0.36723 * 5 4 3 7 7 C 1.50705 * 125.29967 * 179.89511 * 6 5 4 8 8 N 1.46904 * 109.47092 * 269.69064 * 7 6 5 9 9 C 1.46892 * 111.00150 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47400 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47176 * 60.00212 * 10 9 8 12 12 O 1.42906 * 109.46979 * 300.00140 * 10 9 8 13 13 C 1.53003 * 109.47379 * 180.02562 * 10 9 8 14 14 N 1.46897 * 109.47243 * 180.46485 * 13 10 9 15 15 C 1.46900 * 111.00175 * 199.84915 * 14 13 10 16 16 C 1.46900 * 111.00200 * 75.89192 * 14 13 10 17 17 C 1.50698 * 109.47204 * 189.99952 * 16 14 13 18 18 H 1.08003 * 120.00315 * 0.02562 * 17 16 14 19 19 C 1.37879 * 120.00178 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99852 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00120 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47037 * 60.00689 * 21 19 17 23 23 H 1.48496 * 109.47096 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47362 * 300.00715 * 21 19 17 25 25 H 1.08999 * 109.47475 * 270.00302 * 1 2 3 26 26 H 1.09001 * 109.47437 * 30.00649 * 1 2 3 27 27 H 1.09002 * 109.46939 * 150.00256 * 1 2 3 28 28 H 1.09001 * 109.47207 * 149.69175 * 7 6 5 29 29 H 1.09001 * 109.47408 * 29.69018 * 7 6 5 30 30 H 1.00902 * 110.99507 * 56.04616 * 8 7 6 31 31 H 1.09006 * 109.47311 * 300.00534 * 9 8 7 32 32 H 1.09003 * 109.47279 * 60.00029 * 9 8 7 33 33 H 0.96695 * 113.99519 * 299.99498 * 12 10 9 34 34 H 1.09007 * 109.46925 * 300.46076 * 13 10 9 35 35 H 1.09000 * 109.47305 * 60.46070 * 13 10 9 36 36 H 1.09003 * 109.47048 * 64.81726 * 15 14 13 37 37 H 1.08999 * 109.47144 * 184.82024 * 15 14 13 38 38 H 1.08996 * 109.46971 * 304.82221 * 15 14 13 39 39 H 1.08995 * 109.47113 * 310.00213 * 16 14 13 40 40 H 1.08995 * 109.46845 * 70.00278 * 16 14 13 41 41 H 0.97002 * 120.00005 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2579 1.0606 0.0000 4 8 3.6081 0.6249 0.0006 5 7 3.5711 -0.7934 0.0061 6 6 2.3213 -1.1497 0.0006 7 6 1.8210 -2.5713 0.0013 8 7 1.6585 -3.0339 -1.3835 9 6 1.1705 -4.4189 -1.4220 10 6 1.0146 -4.8644 -2.8774 11 1 1.9796 -4.8051 -3.3808 12 8 0.0788 -4.0110 -3.5392 13 6 0.5057 -6.3068 -2.9175 14 7 0.3667 -6.7383 -4.3148 15 6 -0.5342 -7.8937 -4.4218 16 6 1.6777 -7.0363 -4.9067 17 6 1.5245 -7.2351 -6.3926 18 1 0.5507 -7.1483 -6.8516 19 6 2.6277 -7.5267 -7.1665 20 7 3.8136 -7.6319 -6.6078 21 14 2.4377 -7.7738 -9.0083 22 1 1.8876 -6.5373 -9.6195 23 1 3.7630 -8.0749 -9.6067 24 1 1.5113 -8.9062 -9.2629 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.8609 -2.6184 0.5151 29 1 2.5399 -3.2093 0.5154 30 1 2.5202 -2.9393 -1.8998 31 1 1.8845 -5.0699 -0.9175 32 1 0.2057 -4.4783 -0.9182 33 1 -0.8037 -4.0137 -3.1439 34 1 1.2152 -6.9568 -2.4054 35 1 -0.4632 -6.3642 -2.4214 36 1 -1.5396 -7.5997 -4.1203 37 1 -0.5525 -8.2458 -5.4532 38 1 -0.1789 -8.6929 -3.7713 39 1 2.3581 -6.2056 -4.7195 40 1 2.0808 -7.9443 -4.4583 41 1 4.5899 -7.8367 -7.1523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872250328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:29 Heat of formation + Delta-G solvation = 18.079322 kcal Electronic energy + Delta-G solvation = -22112.366514 eV Core-core repulsion = 18644.631461 eV Total energy + Delta-G solvation = -3467.735053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.53332 -39.49856 -37.62020 -36.49589 -35.06365 -34.58716 -33.85887 -31.17032 -29.64770 -29.34719 -28.20582 -26.23493 -24.85429 -23.15509 -22.82776 -21.81252 -21.49644 -18.59100 -18.24800 -17.38951 -17.27528 -16.84258 -16.65625 -16.28495 -15.82483 -15.75273 -15.50059 -15.21049 -14.92745 -14.80834 -14.18087 -14.05380 -13.92457 -13.57537 -13.34501 -13.13633 -12.94004 -12.83782 -12.80443 -12.57172 -12.55482 -12.44737 -12.28507 -12.10766 -12.04744 -11.63437 -11.47315 -11.31386 -10.64690 -10.59726 -9.53131 -8.90101 -8.20341 -6.29420 -0.56889 0.91298 1.40154 1.43781 1.50868 1.51352 2.07312 2.40534 2.77980 3.01825 3.12609 3.45900 3.65912 3.83393 3.94275 4.02979 4.18865 4.25316 4.40370 4.47063 4.52333 4.55647 4.61138 4.67745 4.71493 4.81897 4.83212 4.83829 5.12017 5.16015 5.20648 5.27701 5.33037 5.65298 5.80903 5.84795 6.05914 6.08952 6.37789 6.69750 6.87109 7.25701 7.40117 8.90406 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.003061 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.561609 B = 9145.152915 C = 9785.386387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.105 3.895 3 N -0.312 5.312 4 O -0.022 6.022 5 N -0.301 5.301 6 C 0.094 3.906 7 C 0.124 3.876 8 N -0.679 5.679 9 C 0.044 3.956 10 C 0.124 3.876 11 H 0.051 0.949 12 O -0.552 6.552 13 C 0.025 3.975 14 N -0.543 5.543 15 C 0.039 3.961 16 C 0.210 3.790 17 C -0.523 4.523 18 H 0.061 0.939 19 C 0.000 4.000 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.265 1.265 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.067 0.933 30 H 0.337 0.663 31 H 0.047 0.953 32 H 0.118 0.882 33 H 0.381 0.619 34 H 0.026 0.974 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.012 0.988 39 H 0.002 0.998 40 H -0.042 1.042 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 8.904 18.026 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 N -0.061 5.061 4 O -0.154 6.154 5 N -0.048 5.048 6 C -0.090 4.090 7 C -0.005 4.005 8 N -0.310 5.310 9 C -0.086 4.086 10 C 0.064 3.936 11 H 0.070 0.930 12 O -0.358 6.358 13 C -0.104 4.104 14 N -0.267 5.267 15 C -0.109 4.109 16 C 0.084 3.916 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.190 1.190 25 H 0.142 0.858 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.136 0.864 33 H 0.229 0.771 34 H 0.045 0.955 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.020 0.980 40 H -0.024 1.024 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.876 10.503 17.294 22.971 hybrid contribution 1.172 -1.796 -0.105 2.148 sum -9.703 8.707 17.189 21.574 Atomic orbital electron populations 1.20893 0.80574 1.06919 1.06576 1.25316 1.02243 0.87586 0.92626 1.79920 0.88582 1.21053 1.16588 1.93369 1.21962 1.14040 1.86063 1.79908 1.19655 0.91263 1.13936 1.25032 0.88991 1.00510 0.94475 1.20833 1.03813 0.84152 0.91724 1.60417 1.36393 1.23020 1.11194 1.22606 1.02682 0.87200 0.96074 1.21635 0.92279 0.88008 0.91720 0.93047 1.86662 1.24070 1.66246 1.58778 1.22819 1.01763 0.96215 0.89564 1.61917 1.13037 1.35470 1.16228 1.22247 0.96573 0.91079 1.01026 1.19352 0.86114 0.92164 0.94016 1.21479 0.94276 1.46780 0.93552 0.92053 1.25907 0.94800 0.95210 1.03873 1.70073 0.99598 1.50297 1.37698 0.85474 0.77316 0.78996 0.79085 1.19565 1.20913 1.18979 0.85813 0.88996 0.86169 0.83366 0.91519 0.84645 0.93499 0.86434 0.77125 0.95536 0.87797 0.89722 0.93015 0.96989 0.98001 1.02434 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.05 71.24 0.72 0.07 16 2 C 0.11 1.82 7.19 43.49 0.31 2.14 16 3 N -0.31 -7.71 12.98 -47.16 -0.61 -8.32 16 4 O -0.02 -0.65 13.71 70.15 0.96 0.32 16 5 N -0.30 -7.91 12.98 -47.16 -0.61 -8.52 16 6 C 0.09 1.77 6.70 43.49 0.29 2.06 16 7 C 0.12 1.52 5.85 85.56 0.50 2.02 16 8 N -0.68 -11.99 6.36 -517.93 -3.29 -15.28 16 9 C 0.04 0.74 5.35 86.30 0.46 1.20 16 10 C 0.12 3.48 3.24 30.59 0.10 3.58 16 11 H 0.05 1.94 6.78 -2.39 -0.02 1.93 16 12 O -0.55 -16.15 13.08 -148.98 -1.95 -18.10 16 13 C 0.03 0.76 4.66 86.30 0.40 1.16 16 14 N -0.54 -22.23 4.56 -927.06 -4.22 -26.46 16 15 C 0.04 1.40 9.37 127.69 1.20 2.59 16 16 C 0.21 11.14 4.55 85.56 0.39 11.52 16 17 C -0.52 -30.02 8.39 25.60 0.21 -29.80 16 18 H 0.06 3.46 7.17 -2.91 -0.02 3.44 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 21 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.12 0.52 7.78 -2.39 -0.02 0.50 16 28 H 0.15 0.61 7.78 -2.39 -0.02 0.59 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.34 7.78 8.72 -89.69 -0.78 7.00 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.38 7.34 9.04 -74.06 -0.67 6.67 16 34 H 0.03 0.83 8.00 -2.38 -0.02 0.81 16 35 H 0.10 2.23 7.94 -2.39 -0.02 2.21 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 37 H 0.05 2.10 6.67 -2.39 -0.02 2.08 16 38 H 0.01 0.40 8.13 -2.39 -0.02 0.39 16 39 H 0.00 0.11 6.63 -2.39 -0.02 0.10 16 40 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -77.72 348.51 -2.77 -80.49 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.40 Total: 8.70 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.04 Total: -3.01 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -8.46 Total: -115.43 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.99 Total: -17.78 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.72 -2.77 -80.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872250328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.568 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds