Wall clock time and date at job start Tue Mar 31 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00088 * 2 1 4 4 C 1.53003 * 109.47000 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46743 * 65.00385 * 4 3 2 6 6 C 1.37099 * 120.00018 * 269.99274 * 5 4 3 7 7 H 1.08001 * 120.00185 * 140.16948 * 6 5 4 8 8 C 1.38950 * 120.00440 * 320.18119 * 6 5 4 9 9 N 1.31406 * 120.00223 * 160.42576 * 8 6 5 10 10 Si 1.86797 * 119.99450 * 340.42423 * 8 6 5 11 11 H 1.48502 * 109.47339 * 91.55929 * 10 8 6 12 12 H 1.48509 * 109.47043 * 211.55838 * 10 8 6 13 13 H 1.48500 * 109.47604 * 331.55851 * 10 8 6 14 14 C 1.34774 * 120.00428 * 90.00072 * 5 4 3 15 15 O 1.21294 * 119.99964 * 4.76008 * 14 5 4 16 16 C 1.50701 * 120.00515 * 184.76044 * 14 5 4 17 17 H 1.09008 * 109.12525 * 32.08697 * 16 14 5 18 18 C 1.52743 * 109.39929 * 272.78766 * 16 14 5 19 19 C 1.53350 * 108.81655 * 189.17072 * 18 16 14 20 20 C 1.53066 * 108.42354 * 67.37226 * 19 18 16 21 21 C 1.50172 * 109.89165 * 311.09484 * 20 19 18 22 22 O 1.21286 * 118.24601 * 197.61179 * 21 20 19 23 23 N 1.33356 * 123.50888 * 17.58209 * 21 20 19 24 24 C 1.46503 * 117.94572 * 177.77633 * 23 21 20 25 25 H 1.09005 * 109.47203 * 300.00121 * 1 2 3 26 26 H 1.09004 * 109.47162 * 59.99715 * 1 2 3 27 27 H 1.08999 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47119 * 59.99987 * 3 2 1 29 29 H 1.09001 * 109.47391 * 300.00281 * 3 2 1 30 30 H 1.08991 * 109.47134 * 305.00296 * 4 3 2 31 31 H 1.09005 * 109.46752 * 184.99923 * 4 3 2 32 32 H 0.97002 * 119.99675 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.66171 * 69.28899 * 18 16 14 34 34 H 1.08994 * 109.39814 * 308.89135 * 18 16 14 35 35 H 1.09000 * 109.67288 * 307.63032 * 19 18 16 36 36 H 1.09006 * 109.66731 * 187.10322 * 19 18 16 37 37 H 1.08999 * 109.39643 * 190.96750 * 20 19 18 38 38 H 1.08995 * 109.40502 * 71.22769 * 20 19 18 39 39 H 1.08998 * 109.47384 * 5.53528 * 24 23 21 40 40 H 1.08996 * 109.47028 * 245.53550 * 24 23 21 41 41 H 1.09001 * 109.47005 * 125.53939 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0980 -0.7991 -1.3346 7 1 3.7891 -1.3147 -2.2320 8 6 4.6180 -1.5174 -0.2649 9 7 4.3909 -2.8081 -0.1676 10 14 5.6401 -0.6483 1.0348 11 1 4.7553 -0.1911 2.1363 12 1 6.6572 -1.5866 1.5739 13 1 6.3204 0.5238 0.4276 14 6 4.2633 1.3328 -2.3200 15 8 4.2398 2.5415 -2.2215 16 6 4.6131 0.6910 -3.6379 17 1 4.0699 -0.2494 -3.7324 18 6 6.1135 0.4083 -3.6821 19 6 6.4929 -0.0279 -5.1025 20 6 6.3110 1.1678 -6.0406 21 6 4.9643 1.7932 -5.8159 22 8 4.5233 2.5297 -6.6728 23 7 4.2270 1.5816 -4.7251 24 6 2.9518 2.2936 -4.6095 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1765 0.0902 32 1 4.7544 -3.3095 0.5790 33 1 6.3578 -0.3869 -2.9777 34 1 6.6603 1.3137 -3.4193 35 1 5.8461 -0.8456 -5.4203 36 1 7.5330 -0.3537 -5.1206 37 1 6.3861 0.8314 -7.0746 38 1 7.0897 1.9045 -5.8434 39 1 2.7574 2.8426 -5.5308 40 1 3.0000 2.9917 -3.7738 41 1 2.1494 1.5761 -4.4377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909563506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:49 Heat of formation + Delta-G solvation = -94.029949 kcal Electronic energy + Delta-G solvation = -24425.980719 eV Core-core repulsion = 20921.091492 eV Total energy + Delta-G solvation = -3504.889227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45316 -38.82966 -37.20746 -35.78388 -34.99393 -33.57978 -32.06135 -30.38918 -28.80223 -26.70503 -25.93898 -25.14039 -24.27872 -22.38366 -21.87415 -19.36029 -18.34426 -17.41013 -16.69086 -16.19655 -16.00137 -15.75065 -15.50509 -15.04556 -14.69599 -14.48155 -14.11741 -13.83018 -13.72325 -13.20554 -13.16487 -12.76601 -12.66049 -12.18794 -11.95707 -11.77419 -11.74129 -11.47051 -11.36431 -11.04088 -10.95132 -10.83656 -10.73578 -10.54779 -10.16774 -9.98580 -9.54459 -9.22762 -9.14573 -8.83815 -8.04633 -7.89624 -6.49456 -4.12209 2.96376 2.99106 3.14527 3.21354 3.27005 3.60826 4.07291 4.17458 4.37734 4.85156 4.86238 5.04351 5.15067 5.16471 5.52210 5.57678 5.65644 5.70066 5.72263 5.76603 5.83163 5.86270 5.91363 5.93665 6.00612 6.02865 6.10627 6.16443 6.20364 6.35057 6.41553 6.44578 6.54149 6.74904 7.25374 7.72928 7.84850 8.00709 8.14331 8.50466 8.86969 9.22810 9.52108 10.60695 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.007111 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.411843 B = 3936.846558 C = 4838.304168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.096 3.904 5 N -0.447 5.447 6 C -0.338 4.338 7 H 0.104 0.896 8 C 0.078 3.922 9 N -0.853 5.853 10 Si 0.871 3.129 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.471 3.529 15 O -0.590 6.590 16 C 0.142 3.858 17 H 0.101 0.899 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.133 4.133 21 C 0.517 3.483 22 O -0.572 6.572 23 N -0.580 5.580 24 C 0.062 3.938 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.274 0.726 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 3.049 -2.306 3.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.027 4.027 5 N -0.166 5.166 6 C -0.465 4.465 7 H 0.121 0.879 8 C -0.130 4.130 9 N -0.487 5.487 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.259 3.741 15 O -0.475 6.475 16 C 0.036 3.964 17 H 0.119 0.881 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.173 4.173 21 C 0.306 3.694 22 O -0.453 6.453 23 N -0.311 5.311 24 C -0.081 4.081 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.196 3.620 -2.560 4.438 hybrid contribution 0.128 0.345 1.076 1.137 sum -0.069 3.966 -1.484 4.235 Atomic orbital electron populations 1.22665 0.82970 1.02158 0.98732 1.88230 1.17701 1.26426 1.94999 1.22841 0.94785 0.85327 0.99220 1.21811 0.92329 0.99215 0.89347 1.43634 1.56691 1.07165 1.09142 1.18915 1.43390 0.78817 1.05391 0.87861 1.25203 0.95677 0.95034 0.97076 1.69738 1.40565 1.07560 1.30874 0.87080 0.80686 0.80209 0.82146 1.20042 1.21435 1.18606 1.20412 0.80402 0.86725 0.86527 1.90524 1.57486 1.14367 1.85143 1.20750 0.97738 0.92992 0.84930 0.88092 1.21703 0.92914 1.03370 0.97879 1.21664 1.02623 0.97206 0.94327 1.21645 0.94668 0.99015 1.01937 1.20082 0.86913 0.81273 0.81123 1.90642 1.71828 1.39573 1.43286 1.46971 1.20977 1.44589 1.18526 1.21946 0.84160 0.97707 1.04263 0.95183 0.94917 0.90022 0.93859 0.93537 0.90425 0.89635 0.91531 0.87862 0.91254 0.90829 0.90431 0.88588 0.88592 0.89955 0.89875 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.24 10.18 -35.23 -0.36 -7.60 16 3 C 0.06 1.05 6.28 37.16 0.23 1.29 16 4 C 0.10 2.01 4.65 -4.04 -0.02 1.99 16 5 N -0.45 -9.93 2.12 -114.81 -0.24 -10.17 16 6 C -0.34 -8.07 8.23 -14.93 -0.12 -8.19 16 7 H 0.10 2.59 6.61 -52.49 -0.35 2.25 16 8 C 0.08 1.94 5.34 -17.47 -0.09 1.84 16 9 N -0.85 -22.30 13.96 55.50 0.77 -21.53 16 10 Si 0.87 19.34 25.11 -169.99 -4.27 15.08 16 11 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 14 C 0.47 10.09 6.07 -10.99 -0.07 10.02 16 15 O -0.59 -13.61 13.94 5.55 0.08 -13.54 16 16 C 0.14 2.65 2.49 -69.62 -0.17 2.48 16 17 H 0.10 1.92 6.38 -51.92 -0.33 1.59 16 18 C -0.12 -1.95 5.23 -26.68 -0.14 -2.09 16 19 C -0.12 -1.55 6.04 -26.52 -0.16 -1.71 16 20 C -0.13 -1.81 6.03 -28.10 -0.17 -1.98 16 21 C 0.52 9.30 7.47 -11.87 -0.09 9.21 16 22 O -0.57 -11.87 15.95 5.55 0.09 -11.78 16 23 N -0.58 -10.74 2.95 -176.61 -0.52 -11.26 16 24 C 0.06 1.12 9.61 59.85 0.58 1.70 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.70 3.26 -51.93 -0.17 1.53 16 31 H 0.09 1.71 7.36 -51.93 -0.38 1.33 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.10 1.74 7.83 -51.93 -0.41 1.33 16 34 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.48 6.61 -51.93 -0.34 1.14 16 40 H 0.08 1.63 5.86 -51.93 -0.30 1.33 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -29.95 325.12 -4.76 -34.71 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.10 Total: 5.02 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 0.89 Total: 16.17 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.01 Total: -42.96 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.19 Total: -32.92 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.27 Total: 15.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.95 -4.76 -34.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909563506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.322 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds