Wall clock time and date at job start Tue Mar 31 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99871 * 2 1 4 4 C 1.53003 * 109.46609 * 82.50745 * 3 2 1 5 5 H 1.08997 * 112.78279 * 287.17924 * 4 3 2 6 6 C 1.53244 * 113.37904 * 156.48078 * 4 3 2 7 7 C 1.53500 * 83.42666 * 219.29122 * 6 4 3 8 8 N 1.47064 * 113.46880 * 57.97141 * 4 3 2 9 9 C 1.36937 * 136.05722 * 321.93266 * 8 4 3 10 10 H 1.07997 * 119.99715 * 327.00581 * 9 8 4 11 11 C 1.38812 * 119.99871 * 147.00560 * 9 8 4 12 12 N 1.31618 * 119.99442 * 170.90105 * 11 9 8 13 13 Si 1.86795 * 120.00404 * 350.90248 * 11 9 8 14 14 H 1.48505 * 109.47302 * 89.23126 * 13 11 9 15 15 H 1.48501 * 109.47020 * 329.23538 * 13 11 9 16 16 H 1.48493 * 109.47491 * 209.23451 * 13 11 9 17 17 C 1.34773 * 120.00442 * 180.02562 * 2 1 3 18 18 O 1.21285 * 120.00377 * 183.81801 * 17 2 1 19 19 C 1.50701 * 120.00031 * 3.82195 * 17 2 1 20 20 H 1.08998 * 109.52123 * 39.97233 * 19 17 2 21 21 C 1.53146 * 109.52230 * 279.84687 * 19 17 2 22 22 O 1.43086 * 109.14135 * 184.84920 * 21 19 17 23 23 C 1.43078 * 113.64827 * 57.85408 * 22 21 19 24 24 C 1.53138 * 109.14880 * 302.08096 * 23 22 21 25 25 O 1.43064 * 109.52878 * 160.10742 * 19 17 2 26 26 H 1.08999 * 109.47356 * 84.70064 * 1 2 3 27 27 H 1.09008 * 109.46912 * 204.69776 * 1 2 3 28 28 H 1.09000 * 109.47155 * 324.69411 * 1 2 3 29 29 H 1.08999 * 109.47233 * 322.51260 * 3 2 1 30 30 H 1.08997 * 109.47383 * 202.50355 * 3 2 1 31 31 H 1.08996 * 114.32947 * 105.65768 * 6 4 3 32 32 H 1.08996 * 114.19927 * 332.91599 * 6 4 3 33 33 H 1.09004 * 113.46674 * 271.11206 * 7 6 4 34 34 H 1.09007 * 113.51754 * 140.68943 * 7 6 4 35 35 H 0.97006 * 119.99377 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.52527 * 304.68671 * 21 19 17 37 37 H 1.09005 * 109.52149 * 64.88194 * 21 19 17 38 38 H 1.09000 * 109.52430 * 182.17812 * 23 22 21 39 39 H 1.09007 * 109.52705 * 61.98052 * 23 22 21 40 40 H 1.09004 * 109.52210 * 295.40797 * 24 23 22 41 41 H 1.08997 * 109.52745 * 175.21714 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2895 1.8044 1.4303 5 1 1.3394 2.1922 1.7977 6 6 3.4646 2.7642 1.6457 7 6 3.5800 2.0395 2.9940 8 7 2.9425 0.8739 2.3633 9 6 2.9558 -0.4818 2.5560 10 1 2.0715 -1.0655 2.3476 11 6 4.1061 -1.1056 3.0194 12 7 4.0699 -2.3723 3.3749 13 14 5.7051 -0.1474 3.1383 14 1 5.7972 0.4985 4.4724 15 1 5.7377 0.8945 2.0807 16 1 6.8518 -1.0733 2.9564 17 6 2.1389 -1.1671 -0.0005 18 8 3.3497 -1.1683 0.0694 19 6 1.3880 -2.4708 -0.0881 20 1 0.5635 -2.3695 -0.7938 21 6 0.8374 -2.8380 1.2930 22 8 0.2246 -4.1293 1.2256 23 6 1.1098 -5.1621 0.7820 24 6 1.6590 -4.7941 -0.5993 25 8 2.2731 -3.5036 -0.5317 26 1 -0.3634 0.0949 -1.0232 27 1 -0.3633 -0.9337 0.4294 28 1 -0.3633 0.8386 0.5939 29 1 1.6729 1.9912 -0.6254 30 1 3.2013 1.1088 -0.3933 31 1 3.1789 3.8130 1.7251 32 1 4.3070 2.5967 0.9747 33 1 2.9772 2.4905 3.7822 34 1 4.6094 1.8570 3.3030 35 1 4.8738 -2.8084 3.6983 36 1 1.6526 -2.8599 2.0161 37 1 0.0977 -2.0981 1.5987 38 1 0.5666 -6.1050 0.7187 39 1 1.9349 -5.2626 1.4872 40 1 0.8430 -4.7718 -1.3217 41 1 2.3984 -5.5337 -0.9063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085494378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:40 Heat of formation + Delta-G solvation = -30.804419 kcal Electronic energy + Delta-G solvation = -25150.883504 eV Core-core repulsion = 21648.735941 eV Total energy + Delta-G solvation = -3502.147563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07843 -38.87090 -37.60962 -35.59326 -34.61807 -32.20581 -31.39243 -28.98552 -28.17257 -27.35942 -26.04994 -24.40124 -23.17995 -22.61661 -21.17905 -19.16201 -18.74101 -17.18820 -16.80876 -16.36343 -16.13023 -15.74686 -15.41107 -14.91311 -14.81049 -14.69556 -13.88515 -13.60415 -13.13965 -13.11187 -12.79969 -12.61860 -12.38971 -12.32116 -12.04360 -11.64239 -11.52178 -11.13802 -11.11718 -10.92190 -10.66751 -10.42112 -10.40843 -10.11691 -10.03055 -9.67995 -9.32501 -8.86178 -8.65760 -8.35468 -7.83499 -6.73272 -5.78110 -3.17143 3.31134 3.43860 3.49334 3.61623 3.66396 4.11410 4.31637 4.73748 4.89566 4.96383 5.10136 5.24872 5.30213 5.34311 5.42590 5.44729 5.48499 5.52518 5.62113 5.73229 5.78017 5.87660 5.89571 5.99002 6.03059 6.13109 6.20505 6.26672 6.42928 6.49793 6.58010 6.62828 7.09514 7.13380 7.32623 7.36912 7.60418 8.09438 8.49992 8.79818 9.14573 9.84336 10.58606 11.38607 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.008399 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.561491 B = 3332.921461 C = 4234.058267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.124 3.876 4 C 0.123 3.877 5 H 0.049 0.951 6 C -0.154 4.154 7 C 0.098 3.902 8 N -0.608 5.608 9 C -0.213 4.213 10 H 0.085 0.915 11 C 0.045 3.955 12 N -0.913 5.913 13 Si 0.897 3.103 14 H -0.296 1.296 15 H -0.269 1.269 16 H -0.306 1.306 17 C 0.528 3.472 18 O -0.461 6.461 19 C 0.050 3.950 20 H 0.070 0.930 21 C 0.028 3.972 22 O -0.383 6.383 23 C 0.023 3.977 24 C 0.027 3.973 25 O -0.347 6.347 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.260 0.740 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 2.229 -8.122 12.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C 0.000 4.000 4 C 0.015 3.985 5 H 0.066 0.934 6 C -0.193 4.193 7 C -0.027 4.027 8 N -0.335 5.335 9 C -0.340 4.340 10 H 0.102 0.898 11 C -0.155 4.155 12 N -0.556 5.556 13 Si 0.730 3.270 14 H -0.224 1.224 15 H -0.194 1.194 16 H -0.234 1.234 17 C 0.313 3.687 18 O -0.329 6.329 19 C -0.012 4.012 20 H 0.088 0.912 21 C -0.048 4.048 22 O -0.302 6.302 23 C -0.054 4.054 24 C -0.050 4.050 25 O -0.265 6.265 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.319 1.779 -7.993 11.673 hybrid contribution 0.739 0.431 0.280 0.900 sum -7.579 2.210 -7.713 11.037 Atomic orbital electron populations 1.21776 0.81069 1.03015 1.00697 1.47352 1.05645 1.05716 1.76402 1.21685 0.97522 0.83672 0.97088 1.22576 0.94969 0.90178 0.90752 0.93367 1.23493 0.99468 0.96890 0.99409 1.22666 0.97185 0.88791 0.94062 1.45620 1.55875 1.00416 1.31624 1.18283 0.96581 0.77972 1.41118 0.89760 1.25018 0.97003 0.94708 0.98764 1.69647 1.28658 1.10459 1.46826 0.86602 0.84364 0.78947 0.77105 1.22443 1.19413 1.23412 1.19307 0.88072 0.83442 0.77898 1.90761 1.13397 1.85721 1.43013 1.22490 0.92464 0.88904 0.97353 0.91198 1.23505 1.00517 0.84500 0.96298 1.87990 1.37448 1.17027 1.87736 1.23215 0.95196 0.91247 0.95728 1.23230 0.98579 0.86311 0.96913 1.88230 1.35883 1.15469 1.86937 0.93477 0.91357 0.91467 0.92062 0.89791 0.92160 0.90088 0.94534 0.94346 0.93009 0.87189 0.88094 0.88420 0.91208 0.92860 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 9.99 59.84 0.60 1.64 16 2 N -0.61 -11.08 2.55 -181.57 -0.46 -11.54 16 3 C 0.12 2.18 5.57 -4.04 -0.02 2.16 16 4 C 0.12 2.32 4.35 -72.53 -0.32 2.01 16 5 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 6 C -0.15 -2.73 8.00 -26.35 -0.21 -2.94 16 7 C 0.10 2.11 7.31 -8.51 -0.06 2.05 16 8 N -0.61 -14.64 3.17 -177.15 -0.56 -15.21 16 9 C -0.21 -5.90 7.24 -15.06 -0.11 -6.01 16 10 H 0.09 2.37 4.08 -52.49 -0.21 2.15 16 11 C 0.04 1.33 5.27 -17.43 -0.09 1.24 16 12 N -0.91 -28.23 13.97 55.49 0.78 -27.45 16 13 Si 0.90 24.57 25.02 -169.99 -4.25 20.31 16 14 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 15 H -0.27 -7.22 6.59 56.52 0.37 -6.84 16 16 H -0.31 -8.62 7.11 56.52 0.40 -8.22 16 17 C 0.53 11.47 4.47 -10.99 -0.05 11.42 16 18 O -0.46 -12.33 13.92 -13.47 -0.19 -12.52 16 19 C 0.05 0.95 2.40 -27.81 -0.07 0.89 16 20 H 0.07 1.13 7.30 -51.93 -0.38 0.75 16 21 C 0.03 0.56 5.07 37.23 0.19 0.75 16 22 O -0.38 -6.92 10.84 -48.81 -0.53 -7.45 16 23 C 0.02 0.36 7.05 37.23 0.26 0.63 16 24 C 0.03 0.41 7.05 37.23 0.26 0.67 16 25 O -0.35 -7.12 10.10 -62.12 -0.63 -7.75 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.90 4.46 -51.92 -0.23 0.67 16 28 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.08 1.70 7.04 -51.93 -0.37 1.33 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.51 7.97 -51.93 -0.41 1.10 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.90 4.07 -51.93 -0.21 0.69 16 35 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 36 H 0.11 2.74 6.86 -51.93 -0.36 2.38 16 37 H 0.10 1.81 6.14 -51.93 -0.32 1.49 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -35.49 311.75 -6.65 -42.14 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.88 Total: 0.29 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 0.38 Total: 14.49 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.25 Total: -54.20 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.34 Total: -27.72 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.25 Total: 20.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.49 -6.65 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085494378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.332 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds