Wall clock time and date at job start Tue Mar 31 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99871 * 2 1 4 4 C 1.53003 * 109.46609 * 82.50745 * 3 2 1 5 5 H 1.08997 * 112.78279 * 287.17924 * 4 3 2 6 6 C 1.53244 * 113.37904 * 156.48078 * 4 3 2 7 7 C 1.53500 * 83.42666 * 219.29122 * 6 4 3 8 8 N 1.47064 * 113.46880 * 57.97141 * 4 3 2 9 9 C 1.36937 * 136.05722 * 321.93266 * 8 4 3 10 10 H 1.07997 * 119.99715 * 327.00581 * 9 8 4 11 11 C 1.38812 * 119.99871 * 147.00560 * 9 8 4 12 12 N 1.31618 * 119.99442 * 170.90105 * 11 9 8 13 13 Si 1.86795 * 120.00404 * 350.90248 * 11 9 8 14 14 H 1.48505 * 109.47302 * 89.23126 * 13 11 9 15 15 H 1.48501 * 109.47020 * 329.23538 * 13 11 9 16 16 H 1.48493 * 109.47491 * 209.23451 * 13 11 9 17 17 C 1.34773 * 120.00442 * 180.02562 * 2 1 3 18 18 O 1.21285 * 120.00377 * 183.81801 * 17 2 1 19 19 C 1.50701 * 120.00031 * 3.82195 * 17 2 1 20 20 H 1.08998 * 109.52123 * 39.97233 * 19 17 2 21 21 C 1.53146 * 109.52230 * 279.84687 * 19 17 2 22 22 O 1.43086 * 109.14135 * 184.84920 * 21 19 17 23 23 C 1.43078 * 113.64827 * 57.85408 * 22 21 19 24 24 C 1.53138 * 109.14880 * 302.08096 * 23 22 21 25 25 O 1.43064 * 109.52878 * 160.10742 * 19 17 2 26 26 H 1.08999 * 109.47356 * 84.70064 * 1 2 3 27 27 H 1.09008 * 109.46912 * 204.69776 * 1 2 3 28 28 H 1.09000 * 109.47155 * 324.69411 * 1 2 3 29 29 H 1.08999 * 109.47233 * 322.51260 * 3 2 1 30 30 H 1.08997 * 109.47383 * 202.50355 * 3 2 1 31 31 H 1.08996 * 114.32947 * 105.65768 * 6 4 3 32 32 H 1.08996 * 114.19927 * 332.91599 * 6 4 3 33 33 H 1.09004 * 113.46674 * 271.11206 * 7 6 4 34 34 H 1.09007 * 113.51754 * 140.68943 * 7 6 4 35 35 H 0.97006 * 119.99377 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.52527 * 304.68671 * 21 19 17 37 37 H 1.09005 * 109.52149 * 64.88194 * 21 19 17 38 38 H 1.09000 * 109.52430 * 182.17812 * 23 22 21 39 39 H 1.09007 * 109.52705 * 61.98052 * 23 22 21 40 40 H 1.09004 * 109.52210 * 295.40797 * 24 23 22 41 41 H 1.08997 * 109.52745 * 175.21714 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2895 1.8044 1.4303 5 1 1.3394 2.1922 1.7977 6 6 3.4646 2.7642 1.6457 7 6 3.5800 2.0395 2.9940 8 7 2.9425 0.8739 2.3633 9 6 2.9558 -0.4818 2.5560 10 1 2.0715 -1.0655 2.3476 11 6 4.1061 -1.1056 3.0194 12 7 4.0699 -2.3723 3.3749 13 14 5.7051 -0.1474 3.1383 14 1 5.7972 0.4985 4.4724 15 1 5.7377 0.8945 2.0807 16 1 6.8518 -1.0733 2.9564 17 6 2.1389 -1.1671 -0.0005 18 8 3.3497 -1.1683 0.0694 19 6 1.3880 -2.4708 -0.0881 20 1 0.5635 -2.3695 -0.7938 21 6 0.8374 -2.8380 1.2930 22 8 0.2246 -4.1293 1.2256 23 6 1.1098 -5.1621 0.7820 24 6 1.6590 -4.7941 -0.5993 25 8 2.2731 -3.5036 -0.5317 26 1 -0.3634 0.0949 -1.0232 27 1 -0.3633 -0.9337 0.4294 28 1 -0.3633 0.8386 0.5939 29 1 1.6729 1.9912 -0.6254 30 1 3.2013 1.1088 -0.3933 31 1 3.1789 3.8130 1.7251 32 1 4.3070 2.5967 0.9747 33 1 2.9772 2.4905 3.7822 34 1 4.6094 1.8570 3.3030 35 1 4.8738 -2.8084 3.6983 36 1 1.6526 -2.8599 2.0161 37 1 0.0977 -2.0981 1.5987 38 1 0.5666 -6.1050 0.7187 39 1 1.9349 -5.2626 1.4872 40 1 0.8430 -4.7718 -1.3217 41 1 2.3984 -5.5337 -0.9063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085494378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:39 Heat of formation + Delta-G solvation = -58.521375 kcal Electronic energy + Delta-G solvation = -25152.085401 eV Core-core repulsion = 21648.735941 eV Total energy + Delta-G solvation = -3503.349460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57320 -40.39503 -39.21618 -37.03111 -36.16721 -34.28571 -32.85143 -30.59239 -29.86501 -28.75903 -27.37559 -25.83940 -25.06712 -24.13880 -22.57233 -20.80759 -20.29684 -19.03762 -18.29111 -17.82108 -17.59581 -17.31554 -17.04888 -16.48222 -16.34930 -16.15545 -15.43524 -15.18164 -14.85073 -14.76779 -14.44063 -14.18670 -14.00496 -13.70231 -13.36684 -13.22453 -12.93492 -12.81023 -12.70728 -12.56894 -12.51473 -12.16748 -11.81012 -11.75896 -11.60193 -11.45324 -11.26946 -10.52611 -10.41061 -10.15007 -9.30039 -8.66572 -8.00262 -5.31184 1.23609 1.35801 1.43937 1.87147 1.94748 2.53462 2.72570 2.96147 3.24224 3.37588 3.59057 3.70071 3.83740 3.88817 4.04330 4.13973 4.22585 4.28124 4.32416 4.44230 4.49667 4.52717 4.68409 4.71127 4.73726 4.78370 4.81887 4.87219 4.91248 5.03329 5.04231 5.12675 5.53728 5.74879 5.85105 5.91202 6.02636 6.34121 6.64137 6.71442 7.59027 7.67362 8.55953 9.20504 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.008399 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.561491 B = 3332.921461 C = 4234.058267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.121 3.879 4 C 0.125 3.875 5 H 0.081 0.919 6 C -0.131 4.131 7 C 0.084 3.916 8 N -0.644 5.644 9 C -0.170 4.170 10 H 0.077 0.923 11 C -0.019 4.019 12 N -0.955 5.955 13 Si 0.936 3.064 14 H -0.292 1.292 15 H -0.265 1.265 16 H -0.328 1.328 17 C 0.519 3.481 18 O -0.529 6.529 19 C 0.055 3.945 20 H 0.110 0.890 21 C 0.042 3.958 22 O -0.383 6.383 23 C 0.019 3.981 24 C 0.023 3.977 25 O -0.389 6.389 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.248 0.752 36 H 0.050 0.950 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.035 0.965 40 H 0.087 0.913 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 4.477 -9.898 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.347 5.347 3 C -0.002 4.002 4 C 0.019 3.981 5 H 0.099 0.901 6 C -0.169 4.169 7 C -0.040 4.040 8 N -0.372 5.372 9 C -0.298 4.298 10 H 0.095 0.905 11 C -0.213 4.213 12 N -0.604 5.604 13 Si 0.770 3.230 14 H -0.220 1.220 15 H -0.190 1.190 16 H -0.258 1.258 17 C 0.305 3.695 18 O -0.402 6.402 19 C -0.007 4.007 20 H 0.127 0.873 21 C -0.035 4.035 22 O -0.302 6.302 23 C -0.058 4.058 24 C -0.054 4.054 25 O -0.308 6.308 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.136 0.864 38 H 0.160 0.840 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.559 4.108 -9.787 15.693 hybrid contribution 1.566 -0.194 0.769 1.756 sum -9.992 3.914 -9.018 14.017 Atomic orbital electron populations 1.22102 0.77740 1.03877 1.03431 1.47516 1.07767 1.04811 1.74611 1.21758 0.96891 0.84514 0.97055 1.22827 0.96217 0.88610 0.90428 0.90131 1.23335 0.98350 0.99236 0.95997 1.22913 0.95874 0.88461 0.96750 1.45957 1.56668 1.00061 1.34510 1.18346 0.95468 0.79882 1.36152 0.90535 1.25510 0.99165 0.95273 1.01348 1.69780 1.28149 1.11828 1.50594 0.85952 0.82197 0.77597 0.77207 1.21981 1.19034 1.25824 1.19917 0.87651 0.85178 0.76753 1.90734 1.16155 1.86838 1.46509 1.22514 0.92778 0.87731 0.97631 0.87277 1.23173 0.98996 0.85924 0.95421 1.87977 1.37531 1.16756 1.87957 1.23443 0.94701 0.92361 0.95271 1.23539 1.00075 0.84607 0.97134 1.88182 1.38003 1.17523 1.87054 0.89890 0.91529 0.89417 0.86699 0.93220 0.87072 0.91530 0.92220 0.96867 0.94274 0.93172 0.86443 0.83950 0.94620 0.89529 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.99 127.77 1.28 2.82 16 2 N -0.61 -20.48 2.55 -846.74 -2.16 -22.64 16 3 C 0.12 3.87 5.57 86.38 0.48 4.35 16 4 C 0.13 4.26 4.35 41.71 0.18 4.44 16 5 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 6 C -0.13 -4.15 8.00 30.84 0.25 -3.90 16 7 C 0.08 3.47 7.31 83.18 0.61 4.07 16 8 N -0.64 -30.29 3.17 -714.38 -2.27 -32.56 16 9 C -0.17 -9.61 7.24 84.03 0.61 -9.00 16 10 H 0.08 4.41 4.08 -2.91 -0.01 4.40 16 11 C -0.02 -1.18 5.27 84.86 0.45 -0.73 16 12 N -0.96 -62.98 13.97 21.65 0.30 -62.68 16 13 Si 0.94 52.95 25.02 68.60 1.72 54.67 16 14 H -0.29 -15.88 7.11 99.48 0.71 -15.17 16 15 H -0.27 -14.49 6.59 99.48 0.66 -13.83 16 16 H -0.33 -19.44 7.11 99.48 0.71 -18.73 16 17 C 0.52 22.43 4.47 87.66 0.39 22.82 16 18 O -0.53 -29.34 13.92 15.14 0.21 -29.13 16 19 C 0.05 2.07 2.40 29.90 0.07 2.14 16 20 H 0.11 3.19 7.30 -2.39 -0.02 3.17 16 21 C 0.04 1.66 5.07 72.03 0.36 2.03 16 22 O -0.38 -13.54 10.84 -136.00 -1.47 -15.01 16 23 C 0.02 0.57 7.05 72.03 0.51 1.08 16 24 C 0.02 0.66 7.05 72.03 0.51 1.16 16 25 O -0.39 -16.09 10.10 -123.27 -1.25 -17.33 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.51 4.46 -2.38 -0.01 1.50 16 28 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 29 H 0.12 2.47 8.13 -2.39 -0.02 2.45 16 30 H 0.05 1.95 7.04 -2.39 -0.02 1.94 16 31 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.07 2.33 7.97 -2.39 -0.02 2.31 16 33 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.01 0.61 4.07 -2.38 -0.01 0.60 16 35 H 0.25 16.17 8.31 -92.70 -0.77 15.40 16 36 H 0.05 2.64 6.86 -2.39 -0.02 2.62 16 37 H 0.12 4.10 6.14 -2.38 -0.01 4.08 16 38 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 41 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -85.38 311.75 1.77 -83.61 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.99 Total: 9.80 kcal Atomic # 6 Polarization: 25.59 SS G_CDS: 5.69 Total: 31.28 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.12 Total: -117.88 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -2.51 Total: -61.48 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 1.72 Total: 54.67 kcal Total: -85.38 1.77 -83.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085494378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.090 kcal (2) G-P(sol) polarization free energy of solvation -85.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds