Wall clock time and date at job start Tue Mar 31 2020 03:21:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.47042 * 2 1
4 4 C 1.52996 * 109.47173 * 186.94549 * 3 2 1
5 5 C 1.53006 * 109.46921 * 65.06234 * 4 3 2
6 6 C 1.50701 * 109.46985 * 66.94946 * 3 2 1
7 7 O 1.21286 * 119.99902 * 359.97438 * 6 3 2
8 8 N 1.34775 * 119.99864 * 180.02562 * 6 3 2
9 9 C 1.46506 * 119.99786 * 179.97438 * 8 6 3
10 10 H 1.08996 * 109.46057 * 325.02516 * 9 8 6
11 11 C 1.53043 * 109.45975 * 84.99899 * 9 8 6
12 12 C 1.53190 * 109.31366 * 58.65302 * 11 9 8
13 13 N 1.46933 * 108.77385 * 54.63651 * 12 11 9
14 14 C 1.36928 * 120.63113 * 126.41516 * 13 12 11
15 15 H 1.08003 * 119.99864 * 335.19029 * 14 13 12
16 16 C 1.38814 * 120.00061 * 155.19522 * 14 13 12
17 17 N 1.31622 * 119.99994 * 156.01169 * 16 14 13
18 18 Si 1.86802 * 119.99988 * 336.00634 * 16 14 13
19 19 H 1.48504 * 109.46456 * 95.21514 * 18 16 14
20 20 H 1.48493 * 109.47391 * 215.21519 * 18 16 14
21 21 H 1.48502 * 109.47169 * 335.21934 * 18 16 14
22 22 C 1.46928 * 118.73497 * 306.39017 * 13 12 11
23 23 C 1.53037 * 109.45966 * 205.06720 * 9 8 6
24 24 H 1.09000 * 109.49946 * 181.39875 * 23 9 8
25 25 O 1.42895 * 109.50022 * 61.29505 * 23 9 8
26 26 H 1.09004 * 109.47040 * 184.76148 * 1 2 3
27 27 H 1.08994 * 109.47088 * 304.76787 * 1 2 3
28 28 H 1.09000 * 109.46611 * 64.76667 * 1 2 3
29 29 H 1.09002 * 109.47107 * 239.99845 * 2 1 3
30 30 H 1.09002 * 109.46768 * 119.99878 * 2 1 3
31 31 H 1.08996 * 109.47298 * 306.94724 * 3 2 1
32 32 H 1.08997 * 109.47556 * 185.06363 * 4 3 2
33 33 H 1.09005 * 109.47331 * 305.06490 * 4 3 2
34 34 H 1.08993 * 109.47128 * 294.75983 * 5 4 3
35 35 H 1.08999 * 109.46797 * 54.75688 * 5 4 3
36 36 H 1.09002 * 109.46943 * 174.75517 * 5 4 3
37 37 H 0.97000 * 120.00248 * 359.97438 * 8 6 3
38 38 H 1.08996 * 109.49881 * 178.60874 * 11 9 8
39 39 H 1.08997 * 109.49394 * 298.66851 * 11 9 8
40 40 H 1.08996 * 109.58764 * 174.42235 * 12 11 9
41 41 H 1.09003 * 109.58735 * 294.84868 * 12 11 9
42 42 H 0.96998 * 119.99424 * 179.97438 * 17 16 14
43 43 H 1.09000 * 109.58378 * 173.39910 * 22 13 12
44 44 H 1.08997 * 109.58609 * 293.81951 * 22 13 12
45 45 H 0.96700 * 114.00711 * 179.97438 * 25 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5600 1.4461 -0.1744
5 6 3.9161 0.8922 -1.5556
6 6 1.6830 2.1015 1.3074
7 8 1.0795 1.4788 2.1554
8 7 2.0333 3.3831 1.5338
9 6 1.6856 4.0239 2.8046
10 1 0.7203 3.6512 3.1471
11 6 2.7568 3.7002 3.8487
12 6 4.1176 4.1948 3.3486
13 7 4.0094 5.6223 3.0176
14 6 4.8766 6.5321 3.5610
15 1 5.3655 6.3181 4.4999
16 6 5.1273 7.7296 2.9050
17 7 5.5479 8.7761 3.5835
18 14 4.8677 7.8557 1.0594
19 1 3.5148 8.4039 0.7863
20 1 5.8939 8.7563 0.4756
21 1 4.9878 6.5071 0.4494
22 6 2.9534 6.0548 2.0921
23 6 1.6056 5.5393 2.6063
24 1 1.3714 6.0187 3.5568
25 8 0.5843 5.8424 1.6540
26 1 -0.3633 -1.0242 0.0853
27 1 -0.3633 0.5860 0.8441
28 1 -0.3632 0.4381 -0.9296
29 1 1.8934 -0.5139 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.5788 1.9910 -0.8213
32 1 3.9337 2.4660 -0.0846
33 1 4.0156 0.8231 0.5953
34 1 3.6255 -0.1567 -1.6124
35 1 3.3860 1.4581 -2.3216
36 1 4.9905 0.9809 -1.7166
37 1 2.5155 3.8812 0.8554
38 1 2.5117 4.1968 4.7874
39 1 2.7966 2.6225 4.0069
40 1 4.8660 4.0564 4.1288
41 1 4.4059 3.6344 2.4592
42 1 5.7234 9.6127 3.1250
43 1 2.9337 7.1435 2.0434
44 1 3.1468 5.6460 1.1004
45 1 0.4774 6.7875 1.4791
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001099693268.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:52
Heat of formation + Delta-G solvation = -79.845276 kcal
Electronic energy + Delta-G solvation = -24516.820791 eV
Core-core repulsion = 21148.379752 eV
Total energy + Delta-G solvation = -3368.441039 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.24619 -38.42951 -35.78488 -35.53067 -34.26319 -32.14672 -31.58129 -30.36233
-29.26088 -27.22480 -25.28813 -23.08445 -22.80153 -22.16863 -21.59088 -19.88733
-18.94847 -17.43213 -17.01533 -16.87984 -15.68731 -15.35859 -15.06918 -14.64767
-14.54409 -14.30418 -13.98558 -13.76815 -13.42350 -13.38692 -12.92037 -12.63984
-12.46206 -12.30458 -12.13597 -11.91764 -11.79003 -11.59259 -11.52001 -11.11320
-11.03207 -10.88063 -10.83835 -10.56862 -10.54743 -10.34918 -9.88724 -9.74084
-9.54319 -9.38009 -8.73334 -8.68285 -7.14683 -6.07323 -3.40305 2.87108
3.18526 3.38421 3.39597 3.42955 4.31568 4.40964 4.62333 4.73529
4.81303 4.85701 5.14489 5.15613 5.24532 5.28394 5.32577 5.41157
5.47427 5.54054 5.57703 5.67001 5.68855 5.74966 5.77688 5.85412
5.97727 5.99316 6.03946 6.14144 6.19620 6.25439 6.30732 6.32929
6.39616 6.44584 6.55978 6.70017 6.85867 7.73774 7.78420 7.91155
8.20489 8.48612 8.80210 9.59052 9.94402 11.08196
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.020466 B = 0.005433 C = 0.005036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1367.774674 B = 5152.855211 C = 5558.172921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.102 4.102
3 C -0.109 4.109
4 C -0.118 4.118
5 C -0.151 4.151
6 C 0.518 3.482
7 O -0.546 6.546
8 N -0.709 5.709
9 C 0.164 3.836
10 H 0.084 0.916
11 C -0.145 4.145
12 C 0.149 3.851
13 N -0.599 5.599
14 C -0.263 4.263
15 H 0.089 0.911
16 C 0.024 3.976
17 N -0.901 5.901
18 Si 0.877 3.123
19 H -0.291 1.291
20 H -0.301 1.301
21 H -0.271 1.271
22 C 0.101 3.899
23 C 0.076 3.924
24 H 0.072 0.928
25 O -0.571 6.571
26 H 0.050 0.950
27 H 0.072 0.928
28 H 0.045 0.955
29 H 0.066 0.934
30 H 0.069 0.931
31 H 0.093 0.907
32 H 0.068 0.932
33 H 0.069 0.931
34 H 0.057 0.943
35 H 0.055 0.945
36 H 0.057 0.943
37 H 0.400 0.600
38 H 0.074 0.926
39 H 0.068 0.932
40 H 0.066 0.934
41 H 0.025 0.975
42 H 0.263 0.737
43 H 0.077 0.923
44 H 0.028 0.972
45 H 0.377 0.623
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.051 -12.857 -8.492 16.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.140 4.140
3 C -0.130 4.130
4 C -0.156 4.156
5 C -0.208 4.208
6 C 0.304 3.696
7 O -0.424 6.424
8 N -0.361 5.361
9 C 0.060 3.940
10 H 0.102 0.898
11 C -0.185 4.185
12 C 0.023 3.977
13 N -0.324 5.324
14 C -0.391 4.391
15 H 0.107 0.893
16 C -0.175 4.175
17 N -0.543 5.543
18 Si 0.707 3.293
19 H -0.219 1.219
20 H -0.229 1.229
21 H -0.196 1.196
22 C -0.026 4.026
23 C 0.015 3.985
24 H 0.090 0.910
25 O -0.375 6.375
26 H 0.069 0.931
27 H 0.091 0.909
28 H 0.064 0.936
29 H 0.085 0.915
30 H 0.088 0.912
31 H 0.112 0.888
32 H 0.087 0.913
33 H 0.088 0.912
34 H 0.076 0.924
35 H 0.074 0.926
36 H 0.076 0.924
37 H 0.236 0.764
38 H 0.093 0.907
39 H 0.087 0.913
40 H 0.084 0.916
41 H 0.042 0.958
42 H 0.073 0.927
43 H 0.095 0.905
44 H 0.046 0.954
45 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -7.464 -13.767 -7.856 17.520
hybrid contribution 0.250 1.267 -1.401 1.906
sum -7.214 -12.500 -9.257 17.146
Atomic orbital electron populations
1.21867 0.95616 1.01751 1.02162 1.21364 0.96394 0.94058 1.02163
1.21458 0.97540 0.98056 0.95975 1.21527 0.93324 1.02310 0.98428
1.21810 1.01493 1.01126 0.96374 1.20548 0.78485 0.81678 0.88840
1.90632 1.41181 1.63601 1.46983 1.46044 1.58407 1.12659 1.18942
1.20806 0.98782 0.90384 0.84072 0.89844 1.22391 0.96848 1.01011
0.98253 1.20938 0.94333 0.84389 0.98007 1.44292 1.32076 1.02692
1.53352 1.18938 1.20545 0.96456 1.03156 0.89341 1.25232 0.98817
0.95810 0.97649 1.69879 1.48583 1.00778 1.35095 0.87036 0.76222
0.77499 0.88513 1.21859 1.22927 1.19634 1.21961 0.87842 0.99747
0.93013 1.22764 0.88484 0.94740 0.92520 0.90975 1.86439 1.57239
1.29657 1.64205 0.93121 0.90947 0.93593 0.91532 0.91238 0.88842
0.91320 0.91208 0.92380 0.92594 0.92418 0.76433 0.90737 0.91300
0.91559 0.95752 0.92664 0.90486 0.95401 0.77652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.78 9.71 37.16 0.36 -1.42 16
2 C -0.10 -1.12 4.94 -26.73 -0.13 -1.25 16
3 C -0.11 -1.27 2.18 -91.77 -0.20 -1.47 16
4 C -0.12 -1.26 5.35 -26.73 -0.14 -1.40 16
5 C -0.15 -1.32 9.55 37.16 0.35 -0.96 16
6 C 0.52 7.77 6.80 -10.99 -0.07 7.69 16
7 O -0.55 -9.67 13.77 5.55 0.08 -9.59 16
8 N -0.71 -10.91 4.01 -53.76 -0.22 -11.12 16
9 C 0.16 2.74 2.47 -67.89 -0.17 2.57 16
10 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16
11 C -0.14 -2.43 5.77 -26.61 -0.15 -2.58 16
12 C 0.15 2.80 6.26 -3.71 -0.02 2.78 16
13 N -0.60 -13.26 2.79 -172.32 -0.48 -13.74 16
14 C -0.26 -6.98 10.03 -15.06 -0.15 -7.13 16
15 H 0.09 2.52 8.04 -52.48 -0.42 2.10 16
16 C 0.02 0.67 5.18 -17.43 -0.09 0.58 16
17 N -0.90 -26.58 13.97 55.49 0.78 -25.80 16
18 Si 0.88 21.08 24.40 -169.99 -4.15 16.94 16
19 H -0.29 -6.66 6.67 56.52 0.38 -6.29 16
20 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16
21 H -0.27 -6.35 6.67 56.52 0.38 -5.98 16
22 C 0.10 2.02 3.56 -3.71 -0.01 2.01 16
23 C 0.08 1.31 3.36 -26.61 -0.09 1.22 16
24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
25 O -0.57 -8.96 13.21 -35.23 -0.47 -9.43 16
26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.07 1.01 6.06 -51.93 -0.31 0.70 16
28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.07 0.60 6.38 -51.93 -0.33 0.27 16
30 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16
31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.07 0.79 7.43 -51.93 -0.39 0.40 16
33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.06 0.46 6.68 -51.93 -0.35 0.11 16
35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.40 6.03 6.23 -40.82 -0.25 5.78 16
38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
40 H 0.07 1.26 7.92 -51.93 -0.41 0.84 16
41 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16
42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
43 H 0.08 1.69 4.44 -51.93 -0.23 1.46 16
44 H 0.03 0.55 5.67 -51.93 -0.29 0.26 16
45 H 0.38 4.64 9.08 45.56 0.41 5.06 16
LS Contribution 340.47 15.07 5.13 5.13
Total: -1.00 -30.58 340.47 -6.62 -37.21
By element:
Atomic # 1 Polarization: 16.54 SS G_CDS: -6.77 Total: 9.77 kcal
Atomic # 6 Polarization: 1.17 SS G_CDS: -0.52 Total: 0.64 kcal
Atomic # 7 Polarization: -50.75 SS G_CDS: 0.08 Total: -50.67 kcal
Atomic # 8 Polarization: -18.63 SS G_CDS: -0.39 Total: -19.01 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -4.15 Total: 16.94 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -30.58 -6.62 -37.21 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099693268.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.640 kcal
(2) G-P(sol) polarization free energy of solvation -30.585 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.225 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds