Wall clock time and date at job start Tue Mar 31 2020 03:21:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.47042 * 2 1
4 4 C 1.52996 * 109.47173 * 186.94549 * 3 2 1
5 5 C 1.53006 * 109.46921 * 65.06234 * 4 3 2
6 6 C 1.50701 * 109.46985 * 66.94946 * 3 2 1
7 7 O 1.21286 * 119.99902 * 359.97438 * 6 3 2
8 8 N 1.34775 * 119.99864 * 180.02562 * 6 3 2
9 9 C 1.46506 * 119.99786 * 179.97438 * 8 6 3
10 10 H 1.08996 * 109.46057 * 325.02516 * 9 8 6
11 11 C 1.53043 * 109.45975 * 84.99899 * 9 8 6
12 12 C 1.53190 * 109.31366 * 58.65302 * 11 9 8
13 13 N 1.46933 * 108.77385 * 54.63651 * 12 11 9
14 14 C 1.36928 * 120.63113 * 126.41516 * 13 12 11
15 15 H 1.08003 * 119.99864 * 335.19029 * 14 13 12
16 16 C 1.38814 * 120.00061 * 155.19522 * 14 13 12
17 17 N 1.31622 * 119.99994 * 156.01169 * 16 14 13
18 18 Si 1.86802 * 119.99988 * 336.00634 * 16 14 13
19 19 H 1.48504 * 109.46456 * 95.21514 * 18 16 14
20 20 H 1.48493 * 109.47391 * 215.21519 * 18 16 14
21 21 H 1.48502 * 109.47169 * 335.21934 * 18 16 14
22 22 C 1.46928 * 118.73497 * 306.39017 * 13 12 11
23 23 C 1.53037 * 109.45966 * 205.06720 * 9 8 6
24 24 H 1.09000 * 109.49946 * 181.39875 * 23 9 8
25 25 O 1.42895 * 109.50022 * 61.29505 * 23 9 8
26 26 H 1.09004 * 109.47040 * 184.76148 * 1 2 3
27 27 H 1.08994 * 109.47088 * 304.76787 * 1 2 3
28 28 H 1.09000 * 109.46611 * 64.76667 * 1 2 3
29 29 H 1.09002 * 109.47107 * 239.99845 * 2 1 3
30 30 H 1.09002 * 109.46768 * 119.99878 * 2 1 3
31 31 H 1.08996 * 109.47298 * 306.94724 * 3 2 1
32 32 H 1.08997 * 109.47556 * 185.06363 * 4 3 2
33 33 H 1.09005 * 109.47331 * 305.06490 * 4 3 2
34 34 H 1.08993 * 109.47128 * 294.75983 * 5 4 3
35 35 H 1.08999 * 109.46797 * 54.75688 * 5 4 3
36 36 H 1.09002 * 109.46943 * 174.75517 * 5 4 3
37 37 H 0.97000 * 120.00248 * 359.97438 * 8 6 3
38 38 H 1.08996 * 109.49881 * 178.60874 * 11 9 8
39 39 H 1.08997 * 109.49394 * 298.66851 * 11 9 8
40 40 H 1.08996 * 109.58764 * 174.42235 * 12 11 9
41 41 H 1.09003 * 109.58735 * 294.84868 * 12 11 9
42 42 H 0.96998 * 119.99424 * 179.97438 * 17 16 14
43 43 H 1.09000 * 109.58378 * 173.39910 * 22 13 12
44 44 H 1.08997 * 109.58609 * 293.81951 * 22 13 12
45 45 H 0.96700 * 114.00711 * 179.97438 * 25 23 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5600 1.4461 -0.1744
5 6 3.9161 0.8922 -1.5556
6 6 1.6830 2.1015 1.3074
7 8 1.0795 1.4788 2.1554
8 7 2.0333 3.3831 1.5338
9 6 1.6856 4.0239 2.8046
10 1 0.7203 3.6512 3.1471
11 6 2.7568 3.7002 3.8487
12 6 4.1176 4.1948 3.3486
13 7 4.0094 5.6223 3.0176
14 6 4.8766 6.5321 3.5610
15 1 5.3655 6.3181 4.4999
16 6 5.1273 7.7296 2.9050
17 7 5.5479 8.7761 3.5835
18 14 4.8677 7.8557 1.0594
19 1 3.5148 8.4039 0.7863
20 1 5.8939 8.7563 0.4756
21 1 4.9878 6.5071 0.4494
22 6 2.9534 6.0548 2.0921
23 6 1.6056 5.5393 2.6063
24 1 1.3714 6.0187 3.5568
25 8 0.5843 5.8424 1.6540
26 1 -0.3633 -1.0242 0.0853
27 1 -0.3633 0.5860 0.8441
28 1 -0.3632 0.4381 -0.9296
29 1 1.8934 -0.5139 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.5788 1.9910 -0.8213
32 1 3.9337 2.4660 -0.0846
33 1 4.0156 0.8231 0.5953
34 1 3.6255 -0.1567 -1.6124
35 1 3.3860 1.4581 -2.3216
36 1 4.9905 0.9809 -1.7166
37 1 2.5155 3.8812 0.8554
38 1 2.5117 4.1968 4.7874
39 1 2.7966 2.6225 4.0069
40 1 4.8660 4.0564 4.1288
41 1 4.4059 3.6344 2.4592
42 1 5.7234 9.6127 3.1250
43 1 2.9337 7.1435 2.0434
44 1 3.1468 5.6460 1.1004
45 1 0.4774 6.7875 1.4791
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099693268.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:21:51
Heat of formation + Delta-G solvation = -102.203750 kcal
Electronic energy + Delta-G solvation = -24517.790327 eV
Core-core repulsion = 21148.379752 eV
Total energy + Delta-G solvation = -3369.410575 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 284.189 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.49475 -39.78612 -37.01221 -36.75932 -35.73129 -33.89403 -32.52016 -31.91623
-30.71940 -28.23504 -26.99707 -24.61145 -23.78188 -23.35501 -23.00143 -20.98958
-20.38169 -18.93657 -18.44153 -18.30753 -17.23210 -16.81423 -16.23964 -16.03800
-15.76612 -15.51147 -15.29827 -15.11446 -14.77694 -14.66737 -14.27090 -14.09484
-13.91655 -13.43167 -13.26834 -13.19100 -13.01150 -12.72918 -12.69079 -12.62059
-12.36473 -12.26346 -11.98122 -11.77238 -11.69570 -11.68949 -11.42569 -11.33957
-11.16710 -10.63795 -10.55329 -10.00225 -9.01670 -8.18111 -5.47952 1.28041
1.43051 1.50766 1.71377 2.24760 2.39760 2.87889 3.12999 3.35897
3.67054 3.77306 3.88118 3.93350 3.94374 4.09578 4.20877 4.33361
4.37087 4.38327 4.53111 4.54205 4.61010 4.69475 4.73217 4.85229
4.87014 4.88272 4.93479 4.98078 5.04208 5.10259 5.21723 5.23855
5.25124 5.37836 5.43998 5.48004 5.59602 5.81027 6.10580 6.59173
6.70562 6.87861 7.30924 7.57841 7.96212 9.01181
Molecular weight = 284.19amu
Principal moments of inertia in cm(-1)
A = 0.020466 B = 0.005433 C = 0.005036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1367.774674 B = 5152.855211 C = 5558.172921
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.099 4.099
3 C -0.102 4.102
4 C -0.115 4.115
5 C -0.148 4.148
6 C 0.515 3.485
7 O -0.575 6.575
8 N -0.708 5.708
9 C 0.168 3.832
10 H 0.077 0.923
11 C -0.133 4.133
12 C 0.150 3.850
13 N -0.609 5.609
14 C -0.253 4.253
15 H 0.054 0.946
16 C -0.032 4.032
17 N -0.952 5.952
18 Si 0.940 3.060
19 H -0.271 1.271
20 H -0.314 1.314
21 H -0.257 1.257
22 C 0.101 3.899
23 C 0.091 3.909
24 H 0.066 0.934
25 O -0.569 6.569
26 H 0.059 0.941
27 H 0.042 0.958
28 H 0.059 0.941
29 H 0.092 0.908
30 H 0.053 0.947
31 H 0.110 0.890
32 H 0.060 0.940
33 H 0.062 0.938
34 H 0.068 0.932
35 H 0.063 0.937
36 H 0.060 0.940
37 H 0.404 0.596
38 H 0.071 0.929
39 H 0.076 0.924
40 H 0.058 0.942
41 H 0.038 0.962
42 H 0.262 0.738
43 H 0.060 0.940
44 H 0.041 0.959
45 H 0.393 0.607
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.055 -14.291 -11.089 19.801
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.137 4.137
3 C -0.123 4.123
4 C -0.153 4.153
5 C -0.205 4.205
6 C 0.303 3.697
7 O -0.455 6.455
8 N -0.359 5.359
9 C 0.063 3.937
10 H 0.095 0.905
11 C -0.173 4.173
12 C 0.025 3.975
13 N -0.335 5.335
14 C -0.382 4.382
15 H 0.072 0.928
16 C -0.227 4.227
17 N -0.597 5.597
18 Si 0.769 3.231
19 H -0.197 1.197
20 H -0.243 1.243
21 H -0.181 1.181
22 C -0.025 4.025
23 C 0.029 3.971
24 H 0.084 0.916
25 O -0.376 6.376
26 H 0.078 0.922
27 H 0.061 0.939
28 H 0.078 0.922
29 H 0.111 0.889
30 H 0.072 0.928
31 H 0.127 0.873
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.082 0.918
36 H 0.079 0.921
37 H 0.240 0.760
38 H 0.089 0.911
39 H 0.094 0.906
40 H 0.077 0.923
41 H 0.056 0.944
42 H 0.071 0.929
43 H 0.078 0.922
44 H 0.059 0.941
45 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges -8.501 -15.231 -10.482 20.349
hybrid contribution 0.532 1.659 -0.510 1.816
sum -7.968 -13.571 -10.991 19.196
Atomic orbital electron populations
1.21835 0.95957 1.01926 1.01519 1.21376 0.96046 0.93643 1.02645
1.21494 0.98365 0.98237 0.94231 1.21510 0.92333 1.01879 0.99617
1.21794 1.01842 1.01758 0.95071 1.21194 0.77553 0.81240 0.89722
1.90627 1.42411 1.64145 1.48305 1.46023 1.58486 1.12946 1.18428
1.20655 0.98264 0.90067 0.84723 0.90489 1.22247 0.95666 1.01230
0.98179 1.21017 0.95398 0.82732 0.98357 1.44325 1.32130 1.03366
1.53635 1.18850 1.20370 0.97036 1.01967 0.92778 1.25832 0.99599
0.95447 1.01799 1.70010 1.51417 1.01473 1.36821 0.86002 0.76611
0.77815 0.82694 1.19747 1.24287 1.18112 1.21999 0.88558 0.98836
0.93135 1.22435 0.87346 0.94882 0.92392 0.91603 1.86425 1.56211
1.31413 1.63556 0.92207 0.93911 0.92212 0.88918 0.92809 0.87255
0.92097 0.91929 0.91340 0.91751 0.92141 0.76015 0.91074 0.90576
0.92328 0.94406 0.92894 0.92206 0.94088 0.75748
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.19 9.71 71.98 0.70 -2.49 16
2 C -0.10 -1.92 4.94 30.60 0.15 -1.77 16
3 C -0.10 -2.10 2.18 -11.54 -0.03 -2.12 16
4 C -0.12 -2.15 5.35 30.59 0.16 -1.98 16
5 C -0.15 -2.06 9.55 71.98 0.69 -1.37 16
6 C 0.51 14.49 6.80 87.66 0.60 15.09 16
7 O -0.57 -19.78 13.77 -3.05 -0.04 -19.82 16
8 N -0.71 -20.24 4.01 -442.40 -1.78 -22.01 16
9 C 0.17 5.33 2.47 45.02 0.11 5.44 16
10 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16
11 C -0.13 -4.32 5.77 30.67 0.18 -4.14 16
12 C 0.15 5.49 6.26 86.36 0.54 6.03 16
13 N -0.61 -26.49 2.79 -699.08 -1.95 -28.44 16
14 C -0.25 -13.61 10.03 84.04 0.84 -12.76 16
15 H 0.05 3.21 8.04 -2.91 -0.02 3.19 16
16 C -0.03 -1.75 5.18 84.86 0.44 -1.31 16
17 N -0.95 -57.57 13.97 21.65 0.30 -57.26 16
18 Si 0.94 43.12 24.40 68.60 1.67 44.79 16
19 H -0.27 -11.45 6.67 99.48 0.66 -10.79 16
20 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16
21 H -0.26 -11.05 6.67 99.48 0.66 -10.39 16
22 C 0.10 3.83 3.56 86.36 0.31 4.13 16
23 C 0.09 2.96 3.36 30.67 0.10 3.06 16
24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16
25 O -0.57 -16.31 13.21 -148.98 -1.97 -18.28 16
26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16
27 H 0.04 1.14 6.06 -2.39 -0.01 1.13 16
28 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16
29 H 0.09 1.32 6.38 -2.39 -0.02 1.30 16
30 H 0.05 1.22 7.88 -2.39 -0.02 1.20 16
31 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16
32 H 0.06 1.23 7.43 -2.39 -0.02 1.21 16
33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16
34 H 0.07 0.82 6.68 -2.39 -0.02 0.80 16
35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
37 H 0.40 11.01 6.23 -92.71 -0.58 10.44 16
38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16
39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16
40 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16
41 H 0.04 1.31 7.74 -2.39 -0.02 1.29 16
42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16
43 H 0.06 2.50 4.44 -2.39 -0.01 2.49 16
44 H 0.04 1.48 5.67 -2.39 -0.01 1.47 16
45 H 0.39 8.51 9.08 -74.06 -0.67 7.84 16
Total: -1.00 -66.14 340.47 0.68 -65.46
By element:
Atomic # 1 Polarization: 30.11 SS G_CDS: -0.35 Total: 29.76 kcal
Atomic # 6 Polarization: 1.00 SS G_CDS: 4.79 Total: 5.80 kcal
Atomic # 7 Polarization: -104.29 SS G_CDS: -3.43 Total: -107.72 kcal
Atomic # 8 Polarization: -36.09 SS G_CDS: -2.01 Total: -38.10 kcal
Atomic # 14 Polarization: 43.12 SS G_CDS: 1.67 Total: 44.79 kcal
Total: -66.14 0.68 -65.46 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099693268.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.747 kcal
(2) G-P(sol) polarization free energy of solvation -66.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds