Wall clock time and date at job start Tue Mar 31 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99705 * 2 1 4 4 O 1.21594 * 120.00177 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00016 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00236 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47445 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47017 * 89.99868 * 19 17 15 21 21 H 1.48492 * 109.47131 * 210.00443 * 19 17 15 22 22 H 1.48501 * 109.46802 * 330.00196 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.09003 * 109.46998 * 60.00643 * 1 2 3 25 25 H 1.09001 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47665 * 300.00553 * 1 2 3 27 27 H 0.96998 * 120.00070 * 179.97438 * 2 1 3 28 28 H 0.96994 * 120.00027 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.47416 * 59.99593 * 6 5 3 30 30 H 1.09006 * 109.47110 * 300.00287 * 6 5 3 31 31 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 32 32 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 33 33 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 34 34 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 35 35 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 36 36 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 37 37 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 38 38 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 39 39 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 40 40 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 41 41 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1607 0.0013 8 8 6.1050 1.0173 0.0022 9 7 6.5764 3.1852 0.0006 10 6 8.0168 2.9176 0.0014 11 6 8.7818 4.2426 0.0009 12 6 10.3054 4.0744 0.1245 13 6 10.4351 5.2073 -0.9073 14 7 11.4978 4.9862 -1.8911 15 6 12.0568 6.0510 -2.5461 16 1 11.7146 7.0537 -2.3371 17 6 13.0642 5.8416 -3.4779 18 7 13.4817 4.6195 -3.7323 19 14 13.8273 7.2941 -4.3708 20 1 14.9899 7.7965 -3.5955 21 1 14.2792 6.8647 -5.7186 22 1 12.8192 8.3758 -4.5081 23 6 9.0377 4.8071 -1.4094 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.9500 -0.8400 0.0004 28 1 3.9716 0.3273 0.0013 29 1 3.9554 3.0083 0.8894 30 1 3.9561 3.0070 -0.8905 31 1 6.2532 4.0997 -0.0005 32 1 8.2805 2.3451 -0.8879 33 1 8.2799 2.3468 0.8920 34 1 8.3653 4.9720 0.6956 35 1 10.6690 3.1120 -0.2357 36 1 10.6949 4.3337 1.1089 37 1 10.4708 6.2015 -0.4619 38 1 11.8054 4.0856 -2.0786 39 1 14.1853 4.4731 -4.3837 40 1 8.4045 5.6574 -1.6625 41 1 9.0555 4.0447 -2.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100382963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:13 Heat of formation + Delta-G solvation = -36.336165 kcal Electronic energy + Delta-G solvation = -21369.963432 eV Core-core repulsion = 17899.868746 eV Total energy + Delta-G solvation = -3470.094686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55305 -39.66508 -38.49697 -35.13736 -34.87316 -34.54090 -33.33686 -30.45374 -29.21925 -27.25169 -25.66953 -25.12416 -23.80431 -21.30075 -21.11513 -20.83888 -19.34754 -18.94913 -17.29027 -17.07075 -16.59916 -16.34733 -15.94735 -15.46976 -14.97483 -14.78873 -14.61108 -14.34778 -13.95241 -13.69394 -13.33829 -13.31835 -12.99265 -12.61110 -12.60108 -11.95659 -11.85713 -11.42486 -11.27035 -10.86561 -10.63981 -10.56627 -10.37037 -10.17554 -10.00924 -9.85504 -9.70518 -9.53390 -9.27290 -9.14156 -8.89091 -6.98539 -5.80265 -3.09274 2.22143 2.33581 2.87544 3.05923 3.41477 3.46723 3.48463 3.95189 4.41397 4.56498 4.81181 4.89925 4.94643 5.02253 5.05450 5.16650 5.18018 5.41715 5.43755 5.45528 5.75150 5.77296 5.88011 6.01365 6.05141 6.06216 6.15018 6.25841 6.31365 6.37105 6.52961 6.56135 6.78428 7.07946 7.25442 7.64050 7.67341 7.92823 8.24100 8.38298 9.49377 10.07442 10.41470 11.42060 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.002194 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.312596 B =12761.546289 C =12933.125666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.750 5.750 3 C 0.705 3.295 4 O -0.592 6.592 5 N -0.734 5.734 6 C 0.119 3.881 7 C 0.506 3.494 8 O -0.543 6.543 9 N -0.717 5.717 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.141 4.141 13 C 0.165 3.835 14 N -0.713 5.713 15 C -0.244 4.244 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.161 4.161 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.400 0.600 28 H 0.408 0.592 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.404 0.596 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.054 0.946 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.374 -8.268 10.291 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.406 5.406 3 C 0.405 3.595 4 O -0.470 6.470 5 N -0.393 5.393 6 C -0.009 4.009 7 C 0.291 3.709 8 O -0.420 6.420 9 N -0.368 5.368 10 C 0.009 3.991 11 C -0.147 4.147 12 C -0.181 4.181 13 C 0.053 3.947 14 N -0.351 5.351 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.202 4.202 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.233 0.767 28 H 0.246 0.754 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.239 0.761 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.536 -7.934 10.190 25.974 hybrid contribution 0.835 0.101 -0.626 1.048 sum -21.702 -7.833 9.564 24.976 Atomic orbital electron populations 1.21408 0.77915 1.02057 1.02356 1.44876 1.07841 1.07155 1.80690 1.15839 0.81368 0.84430 0.77869 1.90943 1.67925 1.30247 1.57920 1.44718 1.04658 1.09708 1.80241 1.20889 0.88234 0.86842 1.04937 1.20484 0.88366 0.85599 0.76420 1.90701 1.79941 1.21306 1.50084 1.45949 1.07266 1.09260 1.74373 1.21499 0.77627 0.97678 1.02307 1.22702 0.96326 0.95690 1.00008 1.23426 0.92886 1.01408 1.00400 1.21522 0.87733 0.95761 0.89668 1.42411 1.40657 1.07236 1.44802 1.19301 1.14029 0.88098 1.16139 0.91081 1.24778 0.99518 0.96480 1.00177 1.69660 1.32018 1.18823 1.37506 0.86183 0.79233 0.81669 0.79056 1.21687 1.21767 1.20734 1.24004 1.01320 1.00414 0.94487 0.92282 0.90585 0.92323 0.76726 0.75449 0.88420 0.88307 0.76126 0.90994 0.91556 0.89240 0.90088 0.91941 0.90723 0.78074 0.93442 0.92673 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 10.70 59.85 0.64 1.25 16 2 N -0.75 -5.30 5.72 -72.07 -0.41 -5.71 16 3 C 0.71 7.44 8.57 -86.92 -0.74 6.70 16 4 O -0.59 -8.44 16.34 5.28 0.09 -8.35 16 5 N -0.73 -6.84 5.53 -66.41 -0.37 -7.20 16 6 C 0.12 1.06 6.15 -5.20 -0.03 1.03 16 7 C 0.51 5.45 7.90 -10.99 -0.09 5.36 16 8 O -0.54 -7.65 15.67 5.56 0.09 -7.56 16 9 N -0.72 -7.01 5.56 -60.29 -0.33 -7.34 16 10 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 11 C -0.13 -1.58 3.76 -89.67 -0.34 -1.92 16 12 C -0.14 -2.15 7.39 -25.92 -0.19 -2.34 16 13 C 0.17 3.10 4.47 -67.12 -0.30 2.80 16 14 N -0.71 -17.51 5.41 -52.64 -0.28 -17.80 16 15 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 19 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.16 -2.54 7.45 -25.77 -0.19 -2.74 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.40 1.74 8.84 -40.82 -0.36 1.38 16 28 H 0.41 3.51 7.45 -40.82 -0.30 3.21 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.40 2.95 8.47 -40.82 -0.35 2.60 16 32 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 38 H 0.39 10.09 7.91 -40.82 -0.32 9.77 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -34.92 349.55 -8.11 -43.03 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.34 Total: 11.41 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.51 Total: 4.36 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.67 Total: -65.31 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.17 Total: -15.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.92 -8.11 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100382963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.694 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds