Wall clock time and date at job start Tue Mar 31 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 119.99705 * 2 1 4 4 O 1.21594 * 120.00177 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00016 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00236 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47445 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47017 * 89.99868 * 19 17 15 21 21 H 1.48492 * 109.47131 * 210.00443 * 19 17 15 22 22 H 1.48501 * 109.46802 * 330.00196 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.09003 * 109.46998 * 60.00643 * 1 2 3 25 25 H 1.09001 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47665 * 300.00553 * 1 2 3 27 27 H 0.96998 * 120.00070 * 179.97438 * 2 1 3 28 28 H 0.96994 * 120.00027 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.47416 * 59.99593 * 6 5 3 30 30 H 1.09006 * 109.47110 * 300.00287 * 6 5 3 31 31 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 32 32 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 33 33 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 34 34 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 35 35 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 36 36 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 37 37 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 38 38 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 39 39 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 40 40 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 41 41 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2191 2.4360 0.0000 7 6 5.7007 2.1607 0.0013 8 8 6.1050 1.0173 0.0022 9 7 6.5764 3.1852 0.0006 10 6 8.0168 2.9176 0.0014 11 6 8.7818 4.2426 0.0009 12 6 10.3054 4.0744 0.1245 13 6 10.4351 5.2073 -0.9073 14 7 11.4978 4.9862 -1.8911 15 6 12.0568 6.0510 -2.5461 16 1 11.7146 7.0537 -2.3371 17 6 13.0642 5.8416 -3.4779 18 7 13.4817 4.6195 -3.7323 19 14 13.8273 7.2941 -4.3708 20 1 14.9899 7.7965 -3.5955 21 1 14.2792 6.8647 -5.7186 22 1 12.8192 8.3758 -4.5081 23 6 9.0377 4.8071 -1.4094 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.9500 -0.8400 0.0004 28 1 3.9716 0.3273 0.0013 29 1 3.9554 3.0083 0.8894 30 1 3.9561 3.0070 -0.8905 31 1 6.2532 4.0997 -0.0005 32 1 8.2805 2.3451 -0.8879 33 1 8.2799 2.3468 0.8920 34 1 8.3653 4.9720 0.6956 35 1 10.6690 3.1120 -0.2357 36 1 10.6949 4.3337 1.1089 37 1 10.4708 6.2015 -0.4619 38 1 11.8054 4.0856 -2.0786 39 1 14.1853 4.4731 -4.3837 40 1 8.4045 5.6574 -1.6625 41 1 9.0555 4.0447 -2.1882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100382963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:12 Heat of formation + Delta-G solvation = -65.482587 kcal Electronic energy + Delta-G solvation = -21371.227316 eV Core-core repulsion = 17899.868746 eV Total energy + Delta-G solvation = -3471.358570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38481 -40.58721 -39.73257 -36.16529 -35.66341 -35.44263 -35.02834 -32.23265 -30.19569 -28.21147 -26.51595 -26.43795 -25.57276 -22.48840 -22.01156 -21.73100 -20.51626 -19.88495 -19.02590 -18.08213 -17.48772 -17.14209 -16.95590 -16.50457 -16.33674 -16.01793 -15.60160 -15.25588 -15.18936 -15.00309 -14.68756 -14.18777 -14.11916 -13.50299 -13.34504 -13.21247 -13.01375 -12.99091 -12.90521 -12.64183 -12.18933 -12.07242 -11.63247 -11.54189 -11.50863 -11.14683 -10.95084 -10.79338 -10.49282 -10.12439 -9.84334 -8.96377 -7.94104 -5.22126 1.47610 1.47748 1.49193 1.52508 1.57540 2.08332 2.26333 2.57221 3.34019 3.37805 3.59671 3.76345 3.77619 3.95769 4.28076 4.34980 4.36112 4.36963 4.44083 4.49101 4.58701 4.68771 4.78549 4.97904 4.99506 5.01066 5.07659 5.23981 5.27829 5.34687 5.43120 5.48055 5.53881 5.75355 5.91664 6.28525 6.46001 6.99643 7.12184 7.33975 7.50272 8.13075 8.34143 9.29354 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.002194 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.312596 B =12761.546289 C =12933.125666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.739 5.739 3 C 0.700 3.300 4 O -0.633 6.633 5 N -0.732 5.732 6 C 0.124 3.876 7 C 0.510 3.490 8 O -0.578 6.578 9 N -0.706 5.706 10 C 0.139 3.861 11 C -0.095 4.095 12 C -0.136 4.136 13 C 0.140 3.860 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.079 0.921 17 C -0.081 4.081 18 N -0.972 5.972 19 Si 0.973 3.027 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.268 1.268 23 C -0.154 4.154 24 H 0.048 0.952 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.414 0.586 28 H 0.412 0.588 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.419 0.581 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.372 0.628 39 H 0.250 0.750 40 H 0.067 0.933 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 -7.639 11.477 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.395 5.395 3 C 0.399 3.601 4 O -0.515 6.515 5 N -0.390 5.390 6 C -0.004 4.004 7 C 0.296 3.704 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.015 3.985 11 C -0.114 4.114 12 C -0.175 4.175 13 C 0.031 3.969 14 N -0.368 5.368 15 C -0.373 4.373 16 H 0.097 0.903 17 C -0.273 4.273 18 N -0.623 5.623 19 Si 0.802 3.198 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.193 1.193 23 C -0.195 4.195 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.250 0.750 28 H 0.250 0.750 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.203 0.797 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.216 -7.291 11.419 27.749 hybrid contribution 1.272 -0.121 -0.932 1.582 sum -22.945 -7.413 10.486 26.294 Atomic orbital electron populations 1.21562 0.76981 1.04147 1.01388 1.44875 1.08477 1.06832 1.79333 1.16061 0.81548 0.84753 0.77748 1.90911 1.68699 1.31888 1.59960 1.44706 1.04405 1.10075 1.79853 1.20914 0.86602 0.86935 1.05978 1.20750 0.89092 0.85049 0.75468 1.90692 1.80588 1.22770 1.51746 1.45785 1.06252 1.10054 1.73745 1.21263 0.78785 0.97006 1.01469 1.22523 0.94560 0.96321 0.97980 1.23306 0.95156 0.99209 0.99854 1.21989 0.87537 0.97402 0.89975 1.42636 1.42161 1.05922 1.46089 1.19733 1.13168 0.89125 1.15289 0.90315 1.25595 1.00875 0.98919 1.01874 1.69822 1.32969 1.20864 1.38626 0.85143 0.78468 0.78915 0.77271 1.21443 1.22526 1.19292 1.23776 0.99352 1.00360 0.95978 0.93365 0.86988 0.93195 0.75044 0.75005 0.86964 0.87570 0.74321 0.93246 0.91203 0.85865 0.91423 0.90278 0.90278 0.79657 0.94149 0.91388 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 10.70 127.77 1.37 2.39 16 2 N -0.74 -9.35 5.72 -500.18 -2.86 -12.21 16 3 C 0.70 14.01 8.57 179.05 1.53 15.54 16 4 O -0.63 -17.64 16.34 -4.01 -0.07 -17.71 16 5 N -0.73 -12.67 5.53 -482.29 -2.67 -15.34 16 6 C 0.12 1.97 6.15 85.63 0.53 2.50 16 7 C 0.51 10.10 7.90 87.66 0.69 10.79 16 8 O -0.58 -15.70 15.67 -3.04 -0.05 -15.75 16 9 N -0.71 -12.07 5.56 -463.06 -2.57 -14.65 16 10 C 0.14 3.03 5.51 86.38 0.48 3.51 16 11 C -0.09 -2.09 3.76 -10.18 -0.04 -2.13 16 12 C -0.14 -3.91 7.39 31.12 0.23 -3.68 16 13 C 0.14 5.12 4.47 45.52 0.20 5.32 16 14 N -0.73 -36.25 5.41 -320.44 -1.73 -37.99 16 15 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 18 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 19 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.15 -4.63 7.45 31.21 0.23 -4.40 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.41 2.82 8.84 -92.71 -0.82 2.00 16 28 H 0.41 6.60 7.45 -92.71 -0.69 5.91 16 29 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.42 4.70 8.47 -92.71 -0.79 3.91 16 32 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 33 H 0.07 1.54 8.14 -2.38 -0.02 1.53 16 34 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.81 8.11 -2.39 -0.02 2.79 16 38 H 0.37 20.07 7.91 -92.71 -0.73 19.34 16 39 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.96 7.90 -2.39 -0.02 1.94 16 Total: -1.00 -76.83 349.55 -3.06 -79.89 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -1.95 Total: 31.99 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.53 Total: 13.27 kcal Atomic # 7 Polarization: -130.17 SS G_CDS: -9.55 Total: -139.72 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.11 Total: -33.46 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -76.83 -3.06 -79.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100382963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.407 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds