Wall clock time and date at job start Tue Mar 31 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.65628 * 2 1 4 4 C 1.54597 * 110.98930 * 236.85056 * 2 1 3 5 5 N 1.48113 * 103.42369 * 204.36896 * 4 2 1 6 6 C 1.34775 * 127.03634 * 219.28325 * 5 4 2 7 7 O 1.21279 * 120.00300 * 179.68426 * 6 5 4 8 8 C 1.50703 * 119.99773 * 359.68826 * 6 5 4 9 9 N 1.46506 * 109.47289 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00072 * 179.97438 * 9 8 6 11 11 N 1.34774 * 119.99868 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00212 * 359.97438 * 10 9 8 13 13 C 1.47487 * 105.93136 * 39.02659 * 5 4 2 14 14 C 1.54006 * 107.08392 * 334.77633 * 13 5 4 15 15 H 1.08995 * 110.32372 * 120.19627 * 14 13 5 16 16 C 1.52994 * 110.32525 * 242.31581 * 14 13 5 17 17 N 1.46500 * 109.47027 * 293.54246 * 16 14 13 18 18 C 1.36944 * 120.00048 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99429 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00128 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99724 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47257 * 119.99662 * 22 20 18 25 25 H 1.48495 * 109.47005 * 239.99729 * 22 20 18 26 26 H 1.09001 * 109.47013 * 296.79836 * 1 2 3 27 27 H 1.08999 * 109.47615 * 56.80306 * 1 2 3 28 28 H 1.09005 * 109.47060 * 176.80518 * 1 2 3 29 29 H 1.09007 * 110.61970 * 85.85460 * 4 2 1 30 30 H 1.09001 * 110.54620 * 322.85471 * 4 2 1 31 31 H 1.09001 * 109.47438 * 59.99564 * 8 6 5 32 32 H 1.09004 * 109.47113 * 299.99819 * 8 6 5 33 33 H 0.97001 * 119.99251 * 0.02562 * 9 8 6 34 34 H 0.97006 * 119.99964 * 0.02562 * 11 10 9 35 35 H 0.96999 * 119.99884 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.91335 * 94.13549 * 13 5 4 37 37 H 1.08998 * 109.90858 * 215.42032 * 13 5 4 38 38 H 1.08997 * 109.47771 * 53.54755 * 16 14 13 39 39 H 1.09005 * 109.46835 * 173.54646 * 16 14 13 40 40 H 0.96997 * 120.00426 * 0.02562 * 17 16 14 41 41 H 0.96998 * 119.99430 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2055 -0.7586 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5997 -0.9937 8 6 4.5231 -0.8324 -2.9470 9 7 5.8645 -0.9566 -3.5229 10 6 6.0738 -0.6442 -4.8171 11 7 7.3080 -0.7580 -5.3467 12 8 5.1494 -0.2597 -5.5069 13 6 3.2903 -1.5681 0.6639 14 6 2.0775 -0.7917 1.2100 15 1 1.3222 -1.4832 1.5832 16 6 2.5154 0.1657 2.3201 17 7 2.9827 -0.6061 3.4743 18 6 3.4269 0.0413 4.5964 19 1 3.4331 1.1208 4.6301 20 6 3.8701 -0.6900 5.6899 21 7 3.8629 -2.0055 5.6484 22 14 4.4767 0.1930 7.2201 23 1 4.3843 1.6607 7.0141 24 1 3.6387 -0.1979 8.3821 25 1 5.8898 -0.1819 7.4805 26 1 -0.3633 0.4633 0.9173 27 1 -0.3634 0.5626 -0.8599 28 1 -0.3633 -1.0261 -0.0573 29 1 2.1524 -0.1478 -2.0871 30 1 1.4611 -1.6600 -1.4145 31 1 4.1888 0.2021 -3.0254 32 1 3.8332 -1.4791 -3.4893 33 1 6.6018 -1.2644 -2.9728 34 1 8.0455 -1.0651 -4.7964 35 1 7.4587 -0.5328 -6.2780 36 1 3.1179 -2.6402 0.7583 37 1 4.1895 -1.2843 1.2107 38 1 3.3238 0.7995 1.9555 39 1 1.6713 0.7882 2.6169 40 1 2.9774 -1.5755 3.4439 41 1 4.1723 -2.5165 6.4127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105811043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:45 Heat of formation + Delta-G solvation = -56.483364 kcal Electronic energy + Delta-G solvation = -22470.886639 eV Core-core repulsion = 18999.918305 eV Total energy + Delta-G solvation = -3470.968334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50222 -39.69990 -38.02687 -34.68684 -34.57196 -33.77798 -32.92868 -31.44372 -29.50494 -27.80373 -26.35951 -25.13282 -23.24606 -21.42991 -21.19237 -20.03354 -19.52314 -18.63121 -17.64340 -17.19003 -16.54782 -16.33419 -15.81924 -15.29072 -14.84871 -14.75414 -14.45399 -14.19582 -13.82736 -13.55395 -13.30154 -13.05629 -12.85325 -12.61170 -12.51047 -11.96816 -11.81324 -11.46179 -11.10431 -10.89685 -10.67022 -10.60479 -10.51756 -10.33068 -9.99177 -9.99093 -9.96986 -9.67349 -9.35532 -8.89316 -8.68115 -6.93201 -5.76743 -3.05717 2.40842 2.48670 2.95520 3.06727 3.43781 3.49362 3.51602 4.22857 4.26116 4.49011 4.59288 4.79528 4.89589 5.11225 5.11599 5.31220 5.33813 5.43127 5.49905 5.58058 5.69888 5.75387 5.93654 6.02828 6.07000 6.12298 6.16948 6.22874 6.37886 6.42592 6.43945 6.63512 6.70175 6.83921 7.46822 7.68901 7.70446 8.01144 8.34554 8.41870 9.53277 10.09771 10.44249 11.46109 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019359 B = 0.003477 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.026472 B = 8051.256438 C = 9075.793860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.085 0.915 4 C 0.099 3.901 5 N -0.614 5.614 6 C 0.524 3.476 7 O -0.537 6.537 8 C 0.125 3.875 9 N -0.733 5.733 10 C 0.710 3.290 11 N -0.866 5.866 12 O -0.599 6.599 13 C 0.112 3.888 14 C -0.103 4.103 15 H 0.088 0.912 16 C 0.163 3.837 17 N -0.733 5.733 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.409 0.591 34 H 0.399 0.601 35 H 0.415 0.585 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.019 0.981 39 H 0.023 0.977 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 1.579 -20.588 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.103 0.897 4 C -0.024 4.024 5 N -0.347 5.347 6 C 0.311 3.689 7 O -0.414 6.414 8 C -0.003 4.003 9 N -0.393 5.393 10 C 0.407 3.593 11 N -0.434 5.434 12 O -0.477 6.477 13 C -0.010 4.010 14 C -0.122 4.122 15 H 0.106 0.894 16 C 0.035 3.965 17 N -0.377 5.377 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.247 0.753 34 H 0.227 0.773 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.287 1.815 -20.682 20.801 hybrid contribution 1.085 -0.112 1.098 1.548 sum -0.202 1.703 -19.583 19.658 Atomic orbital electron populations 1.21729 0.93690 1.02088 1.02235 1.22229 0.96188 0.99789 0.93798 0.89672 1.22685 0.82921 0.98919 0.97864 1.48723 1.08006 1.65466 1.12546 1.20033 0.82700 0.78310 0.87814 1.90729 1.29726 1.48158 1.72771 1.20846 0.85161 1.03653 0.90668 1.44740 1.11712 1.72454 1.10402 1.15818 0.83579 0.78239 0.81615 1.42922 1.09187 1.74957 1.16319 1.90969 1.42124 1.53938 1.60692 1.22232 1.00479 0.98928 0.79366 1.22399 0.96540 0.98017 0.95278 0.89404 1.20696 0.96177 0.92800 0.86827 1.42375 1.77189 1.05703 1.12448 1.19251 1.34591 0.91262 0.91957 0.91180 1.24742 1.02215 0.95480 0.98508 1.69668 1.53386 1.04130 1.30900 0.86119 0.78190 0.78580 0.83319 1.20574 1.21870 1.21857 0.91702 0.92570 0.92368 0.90087 0.90414 0.88475 0.88531 0.75313 0.77296 0.75264 0.91525 0.88963 0.96300 0.95969 0.78254 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.17 37.15 0.34 -0.93 16 2 C -0.10 -1.10 3.18 -88.93 -0.28 -1.39 16 3 H 0.08 0.97 7.87 -51.93 -0.41 0.56 16 4 C 0.10 0.96 6.38 -2.32 -0.01 0.95 16 5 N -0.61 -8.09 3.29 -169.98 -0.56 -8.65 16 6 C 0.52 7.22 7.96 -10.98 -0.09 7.13 16 7 O -0.54 -9.33 16.00 5.56 0.09 -9.24 16 8 C 0.12 1.35 5.09 -5.19 -0.03 1.33 16 9 N -0.73 -7.81 5.53 -66.41 -0.37 -8.18 16 10 C 0.71 7.88 8.84 -86.92 -0.77 7.11 16 11 N -0.87 -5.82 8.88 27.63 0.25 -5.58 16 12 O -0.60 -8.92 17.18 5.29 0.09 -8.83 16 13 C 0.11 1.77 6.31 -2.98 -0.02 1.75 16 14 C -0.10 -1.52 2.64 -89.25 -0.24 -1.76 16 15 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 16 C 0.16 3.15 5.35 -4.04 -0.02 3.13 16 17 N -0.73 -18.25 5.33 -59.91 -0.32 -18.57 16 18 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.08 0.62 7.23 -51.93 -0.38 0.24 16 30 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 31 H 0.10 0.99 7.90 -51.93 -0.41 0.58 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.41 4.17 7.45 -40.82 -0.30 3.86 16 34 H 0.40 1.68 8.84 -40.82 -0.36 1.32 16 35 H 0.42 2.22 8.93 -40.82 -0.36 1.86 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.82 7.48 -51.93 -0.39 1.44 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 10.01 7.51 -40.82 -0.31 9.70 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -35.69 342.75 -7.56 -43.25 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.25 Total: 10.63 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -1.36 Total: 9.98 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -0.28 Total: -68.47 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.18 Total: -18.07 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.69 -7.56 -43.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105811043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.233 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds