Wall clock time and date at job start Tue Mar 31 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.65628 * 2 1 4 4 C 1.54597 * 110.98930 * 236.85056 * 2 1 3 5 5 N 1.48113 * 103.42369 * 204.36896 * 4 2 1 6 6 C 1.34775 * 127.03634 * 219.28325 * 5 4 2 7 7 O 1.21279 * 120.00300 * 179.68426 * 6 5 4 8 8 C 1.50703 * 119.99773 * 359.68826 * 6 5 4 9 9 N 1.46506 * 109.47289 * 179.97438 * 8 6 5 10 10 C 1.34774 * 120.00072 * 179.97438 * 9 8 6 11 11 N 1.34774 * 119.99868 * 179.97438 * 10 9 8 12 12 O 1.21583 * 120.00212 * 359.97438 * 10 9 8 13 13 C 1.47487 * 105.93136 * 39.02659 * 5 4 2 14 14 C 1.54006 * 107.08392 * 334.77633 * 13 5 4 15 15 H 1.08995 * 110.32372 * 120.19627 * 14 13 5 16 16 C 1.52994 * 110.32525 * 242.31581 * 14 13 5 17 17 N 1.46500 * 109.47027 * 293.54246 * 16 14 13 18 18 C 1.36944 * 120.00048 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99429 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00128 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99724 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47257 * 119.99662 * 22 20 18 25 25 H 1.48495 * 109.47005 * 239.99729 * 22 20 18 26 26 H 1.09001 * 109.47013 * 296.79836 * 1 2 3 27 27 H 1.08999 * 109.47615 * 56.80306 * 1 2 3 28 28 H 1.09005 * 109.47060 * 176.80518 * 1 2 3 29 29 H 1.09007 * 110.61970 * 85.85460 * 4 2 1 30 30 H 1.09001 * 110.54620 * 322.85471 * 4 2 1 31 31 H 1.09001 * 109.47438 * 59.99564 * 8 6 5 32 32 H 1.09004 * 109.47113 * 299.99819 * 8 6 5 33 33 H 0.97001 * 119.99251 * 0.02562 * 9 8 6 34 34 H 0.97006 * 119.99964 * 0.02562 * 11 10 9 35 35 H 0.96999 * 119.99884 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.91335 * 94.13549 * 13 5 4 37 37 H 1.08998 * 109.90858 * 215.42032 * 13 5 4 38 38 H 1.08997 * 109.47771 * 53.54755 * 16 14 13 39 39 H 1.09005 * 109.46835 * 173.54646 * 16 14 13 40 40 H 0.96997 * 120.00426 * 0.02562 * 17 16 14 41 41 H 0.96998 * 119.99430 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2055 -0.7586 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5997 -0.9937 8 6 4.5231 -0.8324 -2.9470 9 7 5.8645 -0.9566 -3.5229 10 6 6.0738 -0.6442 -4.8171 11 7 7.3080 -0.7580 -5.3467 12 8 5.1494 -0.2597 -5.5069 13 6 3.2903 -1.5681 0.6639 14 6 2.0775 -0.7917 1.2100 15 1 1.3222 -1.4832 1.5832 16 6 2.5154 0.1657 2.3201 17 7 2.9827 -0.6061 3.4743 18 6 3.4269 0.0413 4.5964 19 1 3.4331 1.1208 4.6301 20 6 3.8701 -0.6900 5.6899 21 7 3.8629 -2.0055 5.6484 22 14 4.4767 0.1930 7.2201 23 1 4.3843 1.6607 7.0141 24 1 3.6387 -0.1979 8.3821 25 1 5.8898 -0.1819 7.4805 26 1 -0.3633 0.4633 0.9173 27 1 -0.3634 0.5626 -0.8599 28 1 -0.3633 -1.0261 -0.0573 29 1 2.1524 -0.1478 -2.0871 30 1 1.4611 -1.6600 -1.4145 31 1 4.1888 0.2021 -3.0254 32 1 3.8332 -1.4791 -3.4893 33 1 6.6018 -1.2644 -2.9728 34 1 8.0455 -1.0651 -4.7964 35 1 7.4587 -0.5328 -6.2780 36 1 3.1179 -2.6402 0.7583 37 1 4.1895 -1.2843 1.2107 38 1 3.3238 0.7995 1.9555 39 1 1.6713 0.7882 2.6169 40 1 2.9774 -1.5755 3.4439 41 1 4.1723 -2.5165 6.4127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105811043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:45 Heat of formation + Delta-G solvation = -86.413684 kcal Electronic energy + Delta-G solvation = -22472.184515 eV Core-core repulsion = 18999.918305 eV Total energy + Delta-G solvation = -3472.266210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51832 -40.64867 -39.17838 -36.46986 -35.50391 -34.54495 -34.18126 -33.07953 -30.92383 -28.98037 -27.21131 -26.67959 -24.97391 -22.60339 -22.17017 -21.09245 -20.62920 -19.53342 -19.11575 -18.40507 -17.70054 -17.34619 -16.80350 -16.64692 -16.28626 -15.74996 -15.57837 -15.35730 -15.20075 -15.11586 -14.65712 -14.20421 -13.96378 -13.75149 -13.53180 -13.23212 -13.11330 -12.86070 -12.78846 -12.50667 -12.10925 -11.95718 -11.86055 -11.57964 -11.48034 -11.36649 -11.12528 -10.96604 -10.76184 -10.15188 -9.79495 -9.01572 -7.96888 -5.25659 1.41069 1.45630 1.46795 1.51071 1.56649 2.10672 2.16168 2.54349 3.27265 3.37058 3.53705 3.59599 3.71064 3.79664 4.19405 4.24700 4.30560 4.30913 4.46566 4.56030 4.58045 4.68324 4.79684 4.88694 4.94153 4.99343 5.09410 5.22762 5.24911 5.28520 5.40138 5.47487 5.58266 5.78951 6.01869 6.25723 6.43516 6.90685 6.98482 7.32038 7.58043 8.07493 8.30378 9.26743 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019359 B = 0.003477 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.026472 B = 8051.256438 C = 9075.793860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.083 0.917 4 C 0.100 3.900 5 N -0.613 5.613 6 C 0.521 3.479 7 O -0.582 6.582 8 C 0.134 3.866 9 N -0.734 5.734 10 C 0.707 3.293 11 N -0.846 5.846 12 O -0.637 6.637 13 C 0.117 3.883 14 C -0.093 4.093 15 H 0.091 0.909 16 C 0.163 3.837 17 N -0.745 5.745 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.295 1.295 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.424 0.576 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.029 0.971 40 H 0.374 0.626 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 2.548 -22.315 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.310 3.690 7 O -0.462 6.462 8 C 0.006 3.994 9 N -0.393 5.393 10 C 0.404 3.596 11 N -0.415 5.415 12 O -0.519 6.519 13 C -0.006 4.006 14 C -0.113 4.113 15 H 0.109 0.891 16 C 0.037 3.963 17 N -0.388 5.388 18 C -0.377 4.377 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.191 1.191 24 H -0.217 1.217 25 H -0.222 1.222 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.249 0.751 34 H 0.243 0.757 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.047 0.953 40 H 0.206 0.794 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.241 2.821 -22.447 22.735 hybrid contribution 1.405 -0.392 1.597 2.163 sum -0.836 2.429 -20.850 21.008 Atomic orbital electron populations 1.21708 0.91686 1.03046 1.02817 1.22220 0.97695 0.99124 0.92095 0.89905 1.22969 0.80862 1.00187 0.98094 1.48791 1.09500 1.64966 1.11290 1.20613 0.82042 0.77399 0.88908 1.90707 1.31434 1.50182 1.73884 1.20848 0.85748 1.04586 0.88226 1.44744 1.11806 1.72369 1.10404 1.15966 0.84209 0.78032 0.81360 1.42763 1.08251 1.73637 1.16883 1.90940 1.43638 1.55851 1.61494 1.21954 0.98767 0.98943 0.80970 1.22275 0.96099 0.97526 0.95374 0.89111 1.20825 0.95596 0.93342 0.86543 1.42590 1.77241 1.05599 1.13354 1.19646 1.33548 0.91622 0.92900 0.90849 1.25568 1.03282 0.96253 1.01671 1.69820 1.54928 1.05543 1.31589 0.85083 0.77072 0.78167 0.79509 1.19078 1.21713 1.22234 0.92857 0.90039 0.91497 0.86922 0.88175 0.87185 0.86786 0.75093 0.75661 0.74248 0.91718 0.93683 0.97418 0.95297 0.79363 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.17 71.98 0.66 -1.36 16 2 C -0.09 -1.80 3.18 -9.70 -0.03 -1.83 16 3 H 0.08 1.70 7.87 -2.39 -0.02 1.68 16 4 C 0.10 1.62 6.38 86.61 0.55 2.17 16 5 N -0.61 -15.51 3.29 -810.07 -2.67 -18.18 16 6 C 0.52 14.01 7.96 87.66 0.70 14.71 16 7 O -0.58 -20.68 16.00 -3.03 -0.05 -20.72 16 8 C 0.13 2.64 5.09 85.63 0.44 3.07 16 9 N -0.73 -14.64 5.53 -482.28 -2.67 -17.31 16 10 C 0.71 14.56 8.84 179.06 1.58 16.15 16 11 N -0.85 -9.87 8.88 -184.75 -1.64 -11.51 16 12 O -0.64 -17.99 17.18 -3.98 -0.07 -18.05 16 13 C 0.12 3.78 6.31 86.53 0.55 4.32 16 14 C -0.09 -2.72 2.64 -9.90 -0.03 -2.75 16 15 H 0.09 2.63 7.85 -2.39 -0.02 2.61 16 16 C 0.16 6.39 5.35 86.38 0.46 6.86 16 17 N -0.75 -38.09 5.33 -343.45 -1.83 -39.92 16 18 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 21 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 22 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.91 8.11 -2.38 -0.02 0.89 16 29 H 0.11 1.20 7.23 -2.38 -0.02 1.18 16 30 H 0.10 1.27 8.02 -2.39 -0.02 1.25 16 31 H 0.11 1.93 7.90 -2.39 -0.02 1.91 16 32 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.41 8.06 7.45 -92.71 -0.69 7.37 16 34 H 0.41 2.72 8.84 -92.70 -0.82 1.90 16 35 H 0.42 3.75 8.93 -92.71 -0.83 2.92 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.04 1.89 7.48 -2.39 -0.02 1.87 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.37 20.27 7.51 -92.71 -0.70 19.57 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -79.36 342.75 -2.38 -81.74 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -1.95 Total: 30.49 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 6.19 Total: 24.31 kcal Atomic # 7 Polarization: -138.13 SS G_CDS: -8.52 Total: -146.66 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.12 Total: -38.78 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -79.36 -2.38 -81.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105811043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.673 kcal (2) G-P(sol) polarization free energy of solvation -79.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds