Wall clock time and date at job start Tue Mar 31 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 C 1.53002 * 109.46994 * 119.99757 * 2 1 3 5 5 C 1.50700 * 109.47032 * 65.00488 * 4 2 1 6 6 O 1.21275 * 120.00018 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99980 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00121 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47205 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.55500 * 304.87375 * 9 8 7 11 11 C 1.53298 * 109.51390 * 184.74228 * 9 8 7 12 12 N 1.47151 * 108.38467 * 187.77317 * 11 9 8 13 13 C 1.36933 * 120.98034 * 230.55553 * 12 11 9 14 14 H 1.08004 * 119.99835 * 153.30360 * 13 12 11 15 15 C 1.38817 * 120.00467 * 333.30764 * 13 12 11 16 16 N 1.31619 * 119.99654 * 343.55139 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 163.55185 * 15 13 12 18 18 H 1.48496 * 109.47112 * 94.83196 * 17 15 13 19 19 H 1.48498 * 109.47020 * 214.83071 * 17 15 13 20 20 H 1.48497 * 109.47184 * 334.83052 * 17 15 13 21 21 C 1.47151 * 118.03597 * 50.53995 * 12 11 9 22 22 C 1.53294 * 108.38487 * 309.46342 * 21 12 11 23 23 O 1.42962 * 109.51318 * 65.00231 * 9 8 7 24 24 H 1.08995 * 109.47107 * 60.00455 * 1 2 3 25 25 H 1.09003 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99689 * 1 2 3 27 27 H 1.08997 * 109.47564 * 239.99930 * 2 1 3 28 28 H 1.09005 * 109.47362 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47183 * 299.99982 * 3 2 1 30 30 H 1.09005 * 109.46891 * 60.00198 * 3 2 1 31 31 H 1.08994 * 109.47424 * 304.99807 * 4 2 1 32 32 H 1.09005 * 109.46992 * 184.99685 * 4 2 1 33 33 H 0.96996 * 120.00140 * 359.97438 * 7 5 4 34 34 H 1.09003 * 109.47155 * 59.99330 * 8 7 5 35 35 H 1.09005 * 109.47132 * 299.99626 * 8 7 5 36 36 H 1.09010 * 109.47184 * 180.13002 * 10 9 8 37 37 H 1.08998 * 109.47124 * 300.12332 * 10 9 8 38 38 H 1.08998 * 109.47470 * 60.12940 * 10 9 8 39 39 H 1.09000 * 109.68350 * 307.50368 * 11 9 8 40 40 H 1.09003 * 109.67500 * 68.01332 * 11 9 8 41 41 H 0.97002 * 120.00107 * 179.97438 * 16 15 13 42 42 H 1.08998 * 109.68306 * 189.73649 * 21 12 11 43 43 H 1.09005 * 109.67737 * 69.18539 * 21 12 11 44 44 H 1.08993 * 109.51453 * 172.22607 * 22 21 12 45 45 H 1.08999 * 109.50743 * 292.33075 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 8 1.0111 -2.5901 0.2404 7 7 1.9854 -3.0087 2.1891 8 6 1.5974 -4.4202 2.1307 9 6 2.1086 -5.1417 3.3792 10 6 3.6186 -4.9326 3.5093 11 6 1.8071 -6.6403 3.2641 12 7 2.1357 -7.2798 4.5481 13 6 2.9293 -8.3946 4.5975 14 1 3.5096 -8.6055 5.4837 15 6 2.9879 -9.2538 3.5088 16 7 2.0645 -9.1940 2.5728 17 14 4.3774 -10.4948 3.3721 18 1 3.9342 -11.7975 3.9305 19 1 4.7474 -10.6684 1.9445 20 1 5.5550 -10.0052 4.1327 21 6 1.5867 -6.6856 5.7772 22 6 1.8988 -5.1848 5.7699 23 8 1.4525 -4.6172 4.5361 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6054 -0.2617 2.1370 32 1 3.1264 -0.6443 1.2952 33 1 2.4898 -2.6754 2.9475 34 1 2.0313 -4.8798 1.2426 35 1 0.5110 -4.4968 2.0855 36 1 3.9817 -5.4491 4.3980 37 1 4.1181 -5.3328 2.6271 38 1 3.8318 -3.8672 3.5958 39 1 0.7502 -6.7861 3.0412 40 1 2.4133 -7.0767 2.4702 41 1 2.1056 -9.7941 1.8118 42 1 2.0473 -7.1521 6.6480 43 1 0.5075 -6.8360 5.8073 44 1 1.3838 -4.7018 6.6003 45 1 2.9738 -5.0361 5.8721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107700914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:02 Heat of formation + Delta-G solvation = -73.607972 kcal Electronic energy + Delta-G solvation = -23729.666088 eV Core-core repulsion = 20361.495519 eV Total energy + Delta-G solvation = -3368.170569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.89149 -38.87046 -35.83202 -34.77212 -34.30925 -31.78759 -31.26741 -28.58143 -27.94508 -27.17613 -26.32301 -25.18303 -23.24277 -21.48768 -20.65699 -19.84507 -18.68582 -17.26461 -16.87788 -16.01435 -15.52229 -15.44170 -15.12194 -14.51984 -14.24611 -14.10577 -13.90678 -13.78105 -13.46195 -13.08499 -12.82087 -12.68438 -12.37280 -12.22801 -12.02440 -11.79060 -11.59591 -11.20992 -11.17962 -11.01998 -10.93905 -10.83096 -10.77055 -10.67026 -10.32825 -10.27275 -9.99974 -9.63629 -9.48786 -9.04357 -8.76487 -8.55451 -6.74957 -5.86113 -3.29973 2.83822 3.31889 3.39537 3.41385 3.41778 4.24693 4.42312 4.66616 4.79913 4.83260 5.13977 5.23991 5.32928 5.38093 5.46998 5.48163 5.50021 5.54917 5.60463 5.66524 5.79046 5.86758 5.90285 5.92732 6.01090 6.04078 6.10551 6.13511 6.26847 6.30388 6.39989 6.46354 6.59137 6.71012 6.76485 6.81124 7.05779 7.45448 7.69146 7.73464 7.87595 8.31585 8.44464 9.09217 9.72265 10.29712 11.21870 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.003803 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.357807 B = 7360.880451 C = 7843.800870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.137 4.137 5 C 0.507 3.493 6 O -0.543 6.543 7 N -0.720 5.720 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.256 0.744 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 17.454 -0.003 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.178 4.178 5 C 0.294 3.706 6 O -0.421 6.421 7 N -0.372 5.372 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.034 3.966 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.304 6.304 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.042 17.146 -0.832 17.197 hybrid contribution 1.097 -0.830 0.407 1.434 sum 2.139 16.316 -0.425 16.461 Atomic orbital electron populations 1.21962 0.94759 1.03591 1.00764 1.20849 0.96674 0.95097 0.97328 1.21868 1.00782 0.96004 1.01828 1.21773 1.02658 0.92544 1.00783 1.20673 0.79432 0.88217 0.82327 1.90661 1.39989 1.78038 1.33410 1.46091 1.57458 1.10191 1.23462 1.21317 1.00741 0.79568 0.96834 1.22549 0.91634 0.97360 0.84770 1.22197 0.96155 0.99707 1.03809 1.21282 0.99432 0.85575 0.90348 1.43998 1.57512 1.29875 1.00076 1.19150 1.17816 0.99441 1.01998 0.91464 1.25056 0.97948 0.97526 0.98992 1.70014 1.32261 1.39667 1.12572 0.86279 0.82066 0.81290 0.77145 1.21392 1.21452 1.20401 1.21599 0.96955 0.91871 0.91312 1.23031 0.98684 0.95685 0.85804 1.87823 1.64043 1.64339 1.14181 0.93141 0.90486 0.93479 0.90452 0.92770 0.92519 0.92730 0.89099 0.89186 0.76447 0.90138 0.90969 0.90815 0.91899 0.93978 0.95287 0.88614 0.93430 0.92057 0.95670 0.90217 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.93 37.16 0.33 -1.36 16 2 C -0.08 -0.82 2.57 -90.62 -0.23 -1.05 16 3 C -0.15 -1.15 9.19 37.16 0.34 -0.80 16 4 C -0.14 -1.38 5.17 -27.88 -0.14 -1.52 16 5 C 0.51 7.19 7.55 -10.99 -0.08 7.10 16 6 O -0.54 -9.66 13.96 5.56 0.08 -9.59 16 7 N -0.72 -10.19 5.19 -60.29 -0.31 -10.50 16 8 C 0.14 2.39 4.85 -4.04 -0.02 2.38 16 9 C 0.08 1.44 0.78 -90.47 -0.07 1.37 16 10 C -0.16 -2.72 7.86 37.16 0.29 -2.42 16 11 C 0.16 3.73 4.11 -3.53 -0.01 3.71 16 12 N -0.59 -14.35 2.56 -171.82 -0.44 -14.79 16 13 C -0.25 -6.75 9.65 -15.06 -0.15 -6.89 16 14 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 15 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 16 N -0.90 -25.62 11.14 55.49 0.62 -25.00 16 17 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 22 C 0.05 0.79 6.60 37.31 0.25 1.03 16 23 O -0.38 -7.06 10.17 -35.23 -0.36 -7.42 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 4.90 7.00 -40.82 -0.29 4.61 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.36 6.11 -51.92 -0.32 1.05 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.58 6.59 -51.93 -0.34 0.24 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 2.46 6.16 -51.93 -0.32 2.14 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.79 6.26 -51.93 -0.32 0.47 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -30.33 348.91 -7.57 -37.89 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.77 Total: 4.25 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.39 Total: 3.75 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.14 Total: -50.29 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.28 Total: -17.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.33 -7.57 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107700914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.714 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds