Wall clock time and date at job start Tue Mar 31 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 C 1.53002 * 109.46994 * 119.99757 * 2 1 3 5 5 C 1.50700 * 109.47032 * 65.00488 * 4 2 1 6 6 O 1.21275 * 120.00018 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99980 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00121 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47205 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.55500 * 304.87375 * 9 8 7 11 11 C 1.53298 * 109.51390 * 184.74228 * 9 8 7 12 12 N 1.47151 * 108.38467 * 187.77317 * 11 9 8 13 13 C 1.36933 * 120.98034 * 230.55553 * 12 11 9 14 14 H 1.08004 * 119.99835 * 153.30360 * 13 12 11 15 15 C 1.38817 * 120.00467 * 333.30764 * 13 12 11 16 16 N 1.31619 * 119.99654 * 343.55139 * 15 13 12 17 17 Si 1.86796 * 120.00056 * 163.55185 * 15 13 12 18 18 H 1.48496 * 109.47112 * 94.83196 * 17 15 13 19 19 H 1.48498 * 109.47020 * 214.83071 * 17 15 13 20 20 H 1.48497 * 109.47184 * 334.83052 * 17 15 13 21 21 C 1.47151 * 118.03597 * 50.53995 * 12 11 9 22 22 C 1.53294 * 108.38487 * 309.46342 * 21 12 11 23 23 O 1.42962 * 109.51318 * 65.00231 * 9 8 7 24 24 H 1.08995 * 109.47107 * 60.00455 * 1 2 3 25 25 H 1.09003 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47076 * 299.99689 * 1 2 3 27 27 H 1.08997 * 109.47564 * 239.99930 * 2 1 3 28 28 H 1.09005 * 109.47362 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47183 * 299.99982 * 3 2 1 30 30 H 1.09005 * 109.46891 * 60.00198 * 3 2 1 31 31 H 1.08994 * 109.47424 * 304.99807 * 4 2 1 32 32 H 1.09005 * 109.46992 * 184.99685 * 4 2 1 33 33 H 0.96996 * 120.00140 * 359.97438 * 7 5 4 34 34 H 1.09003 * 109.47155 * 59.99330 * 8 7 5 35 35 H 1.09005 * 109.47132 * 299.99626 * 8 7 5 36 36 H 1.09010 * 109.47184 * 180.13002 * 10 9 8 37 37 H 1.08998 * 109.47124 * 300.12332 * 10 9 8 38 38 H 1.08998 * 109.47470 * 60.12940 * 10 9 8 39 39 H 1.09000 * 109.68350 * 307.50368 * 11 9 8 40 40 H 1.09003 * 109.67500 * 68.01332 * 11 9 8 41 41 H 0.97002 * 120.00107 * 179.97438 * 16 15 13 42 42 H 1.08998 * 109.68306 * 189.73649 * 21 12 11 43 43 H 1.09005 * 109.67737 * 69.18539 * 21 12 11 44 44 H 1.08993 * 109.51453 * 172.22607 * 22 21 12 45 45 H 1.08999 * 109.50743 * 292.33075 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 8 1.0111 -2.5901 0.2404 7 7 1.9854 -3.0087 2.1891 8 6 1.5974 -4.4202 2.1307 9 6 2.1086 -5.1417 3.3792 10 6 3.6186 -4.9326 3.5093 11 6 1.8071 -6.6403 3.2641 12 7 2.1357 -7.2798 4.5481 13 6 2.9293 -8.3946 4.5975 14 1 3.5096 -8.6055 5.4837 15 6 2.9879 -9.2538 3.5088 16 7 2.0645 -9.1940 2.5728 17 14 4.3774 -10.4948 3.3721 18 1 3.9342 -11.7975 3.9305 19 1 4.7474 -10.6684 1.9445 20 1 5.5550 -10.0052 4.1327 21 6 1.5867 -6.6856 5.7772 22 6 1.8988 -5.1848 5.7699 23 8 1.4525 -4.6172 4.5361 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6054 -0.2617 2.1370 32 1 3.1264 -0.6443 1.2952 33 1 2.4898 -2.6754 2.9475 34 1 2.0313 -4.8798 1.2426 35 1 0.5110 -4.4968 2.0855 36 1 3.9817 -5.4491 4.3980 37 1 4.1181 -5.3328 2.6271 38 1 3.8318 -3.8672 3.5958 39 1 0.7502 -6.7861 3.0412 40 1 2.4133 -7.0767 2.4702 41 1 2.1056 -9.7941 1.8118 42 1 2.0473 -7.1521 6.6480 43 1 0.5075 -6.8360 5.8073 44 1 1.3838 -4.7018 6.6003 45 1 2.9738 -5.0361 5.8721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107700914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:01 Heat of formation + Delta-G solvation = -93.585622 kcal Electronic energy + Delta-G solvation = -23730.532384 eV Core-core repulsion = 20361.495519 eV Total energy + Delta-G solvation = -3369.036865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.18243 -40.29004 -36.85996 -36.31756 -35.78313 -33.27632 -33.13825 -29.70613 -29.42167 -27.99792 -27.91039 -26.67832 -24.98919 -23.02934 -21.82206 -20.82326 -20.23695 -18.94569 -18.21276 -17.45910 -16.89855 -16.76025 -16.49569 -16.12001 -15.61518 -15.55537 -15.24479 -15.07806 -14.70621 -14.62691 -14.35856 -14.03606 -13.49999 -13.25331 -13.12780 -12.96579 -12.92734 -12.79022 -12.67481 -12.53554 -12.42405 -12.16514 -12.03160 -11.94564 -11.85351 -11.70422 -11.53640 -11.14111 -10.81883 -10.65213 -10.49973 -10.04188 -8.71944 -7.90240 -5.37681 1.45234 1.47214 1.56838 1.72832 2.23726 2.48351 2.79624 3.24920 3.50511 3.79937 3.90522 4.00556 4.02791 4.07737 4.10999 4.41266 4.42525 4.46880 4.57019 4.64972 4.70997 4.73480 4.75986 4.78564 4.80386 4.89137 4.96911 5.04343 5.08447 5.11973 5.15746 5.20741 5.33825 5.35900 5.40609 5.52649 5.53731 5.58292 5.61104 6.29044 6.37410 6.63517 7.06298 7.34241 7.75590 8.29868 9.15452 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.003803 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.357807 B = 7360.880451 C = 7843.800870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.128 4.128 5 C 0.502 3.498 6 O -0.585 6.585 7 N -0.710 5.710 8 C 0.150 3.850 9 C 0.094 3.906 10 C -0.152 4.152 11 C 0.168 3.832 12 N -0.608 5.608 13 C -0.259 4.259 14 H 0.074 0.926 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.967 3.033 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.264 1.264 21 C 0.101 3.899 22 C 0.053 3.947 23 O -0.386 6.386 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.414 0.586 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.080 0.920 39 H -0.010 1.010 40 H 0.065 0.935 41 H 0.250 0.750 42 H 0.072 0.928 43 H 0.011 0.989 44 H 0.118 0.882 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 20.116 1.648 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.168 4.168 5 C 0.291 3.709 6 O -0.466 6.466 7 N -0.363 5.363 8 C 0.024 3.976 9 C 0.053 3.947 10 C -0.209 4.209 11 C 0.041 3.959 12 N -0.332 5.332 13 C -0.389 4.389 14 H 0.092 0.908 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.215 1.215 19 H -0.221 1.221 20 H -0.189 1.189 21 C -0.024 4.024 22 C -0.025 4.025 23 O -0.305 6.305 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.008 0.992 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.029 0.971 44 H 0.136 0.864 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.875 19.848 0.871 20.074 hybrid contribution 0.437 -1.674 -0.062 1.731 sum 3.313 18.175 0.809 18.492 Atomic orbital electron populations 1.21934 0.95758 1.01570 1.01756 1.20862 0.95879 0.96738 0.96659 1.21806 1.01493 0.93899 1.02585 1.21833 1.04500 0.88828 1.01593 1.21539 0.78294 0.89828 0.81249 1.90659 1.41791 1.79065 1.35058 1.45937 1.57523 1.08615 1.24211 1.20939 0.99249 0.81622 0.95742 1.22180 0.93167 0.93875 0.85508 1.22099 0.93991 1.02036 1.02813 1.21044 0.96349 0.88977 0.89505 1.44260 1.57628 1.29868 1.01420 1.19512 1.17653 0.99766 1.01977 0.90823 1.25825 1.00097 0.99707 0.98984 1.70189 1.34181 1.40785 1.13146 0.85263 0.79699 0.78861 0.76663 1.21498 1.22075 1.18891 1.21829 0.95994 0.94485 0.90109 1.23109 1.00148 0.93044 0.86172 1.87832 1.64392 1.63860 1.14440 0.92584 0.93906 0.92102 0.92558 0.91576 0.92321 0.91473 0.86666 0.86356 0.74842 0.91486 0.93144 0.92020 0.92697 0.90097 0.99242 0.91626 0.94098 0.90918 0.97126 0.86437 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.93 71.98 0.64 -2.60 16 2 C -0.08 -1.52 2.57 -10.79 -0.03 -1.55 16 3 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 4 C -0.13 -2.18 5.17 29.85 0.15 -2.02 16 5 C 0.50 13.68 7.55 87.66 0.66 14.34 16 6 O -0.59 -21.30 13.96 -3.01 -0.04 -21.35 16 7 N -0.71 -18.99 5.19 -463.06 -2.40 -21.39 16 8 C 0.15 5.24 4.85 86.38 0.42 5.66 16 9 C 0.09 3.45 0.78 -10.70 -0.01 3.44 16 10 C -0.15 -4.85 7.86 71.98 0.57 -4.28 16 11 C 0.17 8.14 4.11 86.36 0.35 8.50 16 12 N -0.61 -29.90 2.56 -697.53 -1.79 -31.68 16 13 C -0.26 -13.83 9.65 84.04 0.81 -13.02 16 14 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 15 C -0.05 -2.80 4.95 84.86 0.42 -2.37 16 16 N -0.94 -55.50 11.14 21.65 0.24 -55.26 16 17 Si 0.97 44.12 29.58 68.60 2.03 46.15 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.10 4.06 6.73 86.35 0.58 4.64 16 22 C 0.05 1.65 6.60 72.08 0.48 2.13 16 23 O -0.39 -13.48 10.17 -148.98 -1.52 -14.99 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 1.21 5.95 -2.39 -0.01 1.19 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.28 7.96 -2.39 -0.02 1.26 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.41 8.73 7.00 -92.71 -0.65 8.08 16 34 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 2.14 6.11 -2.38 -0.01 2.13 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 1.94 6.59 -2.39 -0.02 1.92 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 40 H 0.07 3.56 6.16 -2.39 -0.01 3.55 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 43 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 45 H 0.06 1.82 6.26 -2.39 -0.01 1.81 16 Total: -1.00 -69.19 348.91 2.55 -66.65 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.31 Total: 20.09 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.71 Total: 11.79 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -3.95 Total: -108.34 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.56 Total: -36.34 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.19 2.55 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107700914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.939 kcal (2) G-P(sol) polarization free energy of solvation -69.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds